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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    455201 8wwo:C (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    455202 8wwo:D (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    455203 8wwu:A (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455204 8wwu:B (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455205 8wwu:C (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455206 8wwu:D (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455207 8wwu:E (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455208 8wwu:F (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455209 8wwv:A (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455210 8wwv:A (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455211 8wwv:B (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455212 8wwv:B (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455213 8wwv:C (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455214 8wwv:C (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455215 8wwv:D (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455216 8wwv:D (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455217 8wwv:E (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455218 8wwv:E (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455219 8wwv:F (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455220 8wwv:F (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    455221 8www:A (2.78) BS01 YG3 N/A N/A A0A124HF73 N/A
    455222 8www:B (2.78) BS01 YG3 N/A N/A A0A124HF73 N/A
    455223 8wwy:C (1.79) BS01 HX2 ? GO:0043123 ... Q793I8 38442163
    455224 8wwy:D (1.79) BS01 HX2 ? GO:0002224 ... Q8JZM6 38442163
    455225 8wwy:D (1.79) BS02 HX2 ? GO:0002224 ... Q8JZM6 38442163
    455226 8wx4:A (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    455227 8wx4:A (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    455228 8wx4:B (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    455229 8wx4:B (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    455230 8wx7:A (2.02) BS01 XD8 N/A N/A Q06124 39110625
    455231 8wx7:B (2.02) BS01 XD8 N/A N/A Q06124 39110625
    455232 8wxe:m (4.0) BS02 CLR ? N/A Q6PJ56 38657677
    455233 8wxy:A (2.87) BS01 XGN ? N/A O60885 38175809
    455234 8wxy:B (2.87) BS01 XGN ? N/A O60885 38175809
    455235 8wxy:C (2.87) BS01 XGN ? N/A O60885 38175809
    455236 8wy0:b (3.8) BS02 CLR ? GO:0004888 ... P20963 38657677
    455237 8wy0:g (3.8) BS01 CLR ? GO:0004888 ... P09693 38657677
    455238 8wy3:A (2.78) BS01 XHE ? N/A O60885 38175809
    455239 8wy3:B (2.78) BS01 XHE ? N/A O60885 38175809
    455240 8wy3:C (2.78) BS01 XHE ? N/A O60885 38175809
    455241 8wy4:A (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455242 8wy4:A (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455243 8wy4:B (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455244 8wy4:B (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455245 8wy4:C (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455246 8wy4:C (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455247 8wy4:D (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455248 8wy4:D (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455249 8wy7:A (2.83) BS01 XHN ? N/A O60885 38175809
    455250 8wy7:B (2.83) BS01 XHN ? N/A O60885 38175809
    455251 8wy7:C (2.83) BS01 XHN ? N/A O60885 38175809
    455252 8wyb:A (3.37) BS01 NAD ? N/A D4G637 38555355
    455253 8wyb:B (3.37) BS01 NAD ? N/A D4G637 38555355
    455254 8wyb:C (3.37) BS01 NAD ? N/A D4G637 38555355
    455255 8wyb:D (3.37) BS01 NAD ? N/A D4G637 38555355
    455256 8wyc:A (3.0) BS01 NAD ? N/A D4G637 38555355
    455257 8wyc:B (3.0) BS01 NAD ? N/A D4G637 38555355
    455258 8wyc:C (3.0) BS01 NAD ? N/A D4G637 38555355
    455259 8wyc:D (3.0) BS01 NAD ? N/A D4G637 38555355
    455260 8wyf:A (2.85) BS01 NAD N/A N/A D4G637 38555355
    455261 8wyf:B (2.85) BS01 NAD N/A N/A D4G637 38555355
    455262 8wyf:C (2.85) BS01 NAD N/A N/A D4G637 38555355
    455263 8wyf:D (2.85) BS01 NAD N/A N/A D4G637 38555355
    455264 8wyg:A (3.13) BS01 XHN ? N/A P25440 38175809
    455265 8wyg:A (3.13) BS02 XHN ? N/A P25440 38175809
    455266 8wyg:B (3.13) BS01 XHN ? N/A P25440 38175809
    455267 8wyg:C (3.13) BS01 XHN ? N/A P25440 38175809
    455268 8wyg:C (3.13) BS02 XHN ? N/A P25440 38175809
    455269 8wyg:D (3.13) BS01 XHN ? N/A P25440 38175809
    455270 8wyp:A (1.24) BS01 XUK ? N/A O60885 38006801
    455271 8wyp:A (1.24) BS02 XUK ? N/A O60885 38006801
    455272 8wyt:A (2.7) BS01 H8F N/A N/A Q76NL8 N/A
    455273 8wzf:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    455274 8wzg:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    455275 8wzh:A (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455276 8wzh:A (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455277 8wzh:B (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455278 8wzh:B (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455279 8wzh:C (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455280 8wzh:C (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455281 8wzh:D (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455282 8wzh:D (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455283 8wzj:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455284 8wzj:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455285 8wzj:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455286 8wzj:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455287 8wzj:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455288 8wzj:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455289 8wzj:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455290 8wzj:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455291 8wzk:A (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455292 8wzk:A (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455293 8wzk:B (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455294 8wzk:B (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455295 8wzk:C (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455296 8wzk:C (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455297 8wzk:D (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455298 8wzk:D (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455299 8wzm:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455300 8wzm:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455301 8wzm:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455302 8wzm:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455303 8wzm:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455304 8wzm:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455305 8wzm:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    455306 8wzm:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    455307 8wzp:B (1.76) BS01 XIU 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0DTD1 38056159
    455308 8wzq:A (1.66) BS01 XIU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38056159
    455309 8wzq:B (1.66) BS01 XIU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38056159
    455310 8wzr:A (1.6) BS01 XTX N/A N/A P00698 38951539
    455311 8wzt:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    455312 8wzv:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    455313 8x0v:A (2.4) BS01 XP3 N/A N/A N/A N/A
    455314 8x0v:B (2.4) BS01 XP3 N/A N/A N/A N/A
    455315 8x0v:C (2.4) BS01 XP3 N/A N/A N/A N/A
    455316 8x0v:D (2.4) BS01 XP3 N/A N/A N/A N/A
    455317 8x0v:E (2.4) BS01 XP3 N/A N/A N/A N/A
    455318 8x0v:F (2.4) BS01 XP3 N/A N/A N/A N/A
    455319 8x0v:G (2.4) BS01 XP3 N/A N/A N/A N/A
    455320 8x0v:H (2.4) BS01 XP3 N/A N/A N/A N/A
    455321 8x0v:I (2.4) BS01 XP3 N/A N/A N/A N/A
    455322 8x0v:J (2.4) BS01 XP3 N/A N/A N/A N/A
    455323 8x0v:K (2.4) BS01 XP3 N/A N/A N/A N/A
    455324 8x0v:L (2.4) BS01 XP3 N/A N/A N/A N/A
    455325 8x15:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455326 8x15:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455327 8x15:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455328 8x15:O (3.2) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455329 8x15:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455330 8x15:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455331 8x15:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455332 8x15:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    455333 8x15:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    455334 8x16:R (3.29) BS01 Q8L ? GO:0001609 ... P0DMS8 38627384
    455335 8x17:R (3.19) BS01 XS0 ? GO:0001609 ... P0DMS8 38627384
    455336 8x19:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    455337 8x19:I (3.2) BS04 BEF 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    455338 8x19:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455339 8x19:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455340 8x19:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455341 8x19:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455342 8x19:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455343 8x19:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455344 8x19:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    455345 8x19:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    455346 8x1a:B (1.604) BS01 G6P ? GO:0015888 ... A0A0H3AFK0 38704889
    455347 8x1c:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    455348 8x1c:K (3.2) BS01 ATP ? GO:0000786 ... Q9GZN1 38331872
    455349 8x1c:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455350 8x1c:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455351 8x1c:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455352 8x1c:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455353 8x1c:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    455354 8x1c:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    455355 8x1c:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    455356 8x1c:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    455357 8x1f:A (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    455358 8x1f:B (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    455359 8x1w:A (2.1) BS01 HEM N/A N/A Q6WG30 N/A
    455360 8x1z:A (2.62) BS03 XTE N/A N/A P12497 38977798
    455361 8x1z:C (2.62) BS03 XTE N/A N/A P12497 38977798
    455362 8x20:A (2.7) BS02 XTE N/A N/A P12497 38977798
    455363 8x20:C (2.7) BS02 XTE N/A N/A P12497 38977798
    455364 8x21:A (2.33) BS02 ET9 N/A N/A P12497 38977798
    455365 8x21:C (2.33) BS02 ET9 N/A N/A P12497 38977798
    455366 8x22:A (2.31) BS02 DGT N/A N/A P12497 38977798
    455367 8x22:C (2.31) BS02 DGT N/A N/A P12497 38977798
    455368 8x2a:A (1.3) BS01 LTJ 2.7.10.2 GO:0004672 ... P51813 N/A
    455369 8x2j:A (2.7) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    455370 8x2j:A (2.7) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    455371 8x2j:A (2.7) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    455372 8x2j:A (2.7) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    455373 8x2j:A (2.7) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    455374 8x2j:B (2.7) BS01 HEC ? N/A A9WEV3 38299372
    455375 8x2j:B (2.7) BS02 HEC ? N/A A9WEV3 38299372
    455376 8x2j:B (2.7) BS03 SF4 ? N/A A9WEV3 38299372
    455377 8x2j:B (2.7) BS04 SF4 ? N/A A9WEV3 38299372
    455378 8x2j:B (2.7) BS05 SF4 ? N/A A9WEV3 38299372
    455379 8x2j:B (2.7) BS06 F3S ? N/A A9WEV3 38299372
    455380 8x2j:C (2.7) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    455381 8x2j:C (2.7) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    455382 8x2j:C (2.7) BS03 HQO ? GO:0005886 ... A9WEV4 38299372
    455383 8x2j:C (2.7) BS04 JL3 ? GO:0005886 ... A9WEV4 38299372
    455384 8x2j:C (2.7) BS05 JM9 ? GO:0005886 ... A9WEV4 38299372
    455385 8x2j:D (2.7) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    455386 8x2j:E (2.7) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    455387 8x2j:E (2.7) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    455388 8x2j:F (2.7) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    455389 8x2j:F (2.7) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    455390 8x2j:F (2.7) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    455391 8x2k:A (3.03) BS01 5YM ? GO:0004930 ... P0ABE7
    P46089    		 N/A
    455392 8x2l:B (2.99) BS01 FAD 1.-.-.- GO:0005515 ... P04839 38355798
    455393 8x2l:B (2.99) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    455394 8x2l:B (2.99) BS03 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    455395 8x35:A (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    455396 8x35:A (1.92) BS02 DST 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    455397 8x35:B (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    455398 8x35:B (1.92) BS02 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    455399 8x35:B (1.92) BS03 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    455400 8x36:A (2.28) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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