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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    447801 8uew:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    447802 8uex:1B (3.9) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    447803 8uex:1D (3.9) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    447804 8uex:1E (3.9) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    447805 8uex:1F (3.9) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    447806 8uex:1F (3.9) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    447807 8uex:1G (3.9) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    447808 8uex:1G (3.9) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    447809 8uex:1G (3.9) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    447810 8uex:1I (3.9) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    447811 8uex:1I (3.9) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    447812 8uex:1O (3.9) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    447813 8uex:1P (3.9) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    447814 8uex:1T (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    447815 8uex:1U (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    447816 8uex:1W (3.9) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    447817 8uex:1n (3.9) BS01 EHZ N/A N/A K7GSE5 38811722
    447818 8uey:1B (3.6) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    447819 8uey:1D (3.6) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    447820 8uey:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    447821 8uey:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    447822 8uey:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    447823 8uey:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    447824 8uey:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    447825 8uey:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    447826 8uey:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    447827 8uey:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    447828 8uey:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    447829 8uey:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    447830 8uey:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    447831 8uey:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    447832 8uey:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    447833 8uey:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    447834 8uez:1B (3.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    447835 8uez:1B (3.5) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    447836 8uez:1D (3.5) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    447837 8uez:1E (3.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    447838 8uez:1F (3.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    447839 8uez:1F (3.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    447840 8uez:1G (3.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    447841 8uez:1G (3.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    447842 8uez:1G (3.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    447843 8uez:1H (3.5) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    447844 8uez:1I (3.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    447845 8uez:1I (3.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    447846 8uez:1O (3.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    447847 8uez:1P (3.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    447848 8uez:1T (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    447849 8uez:1U (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    447850 8uez:1W (3.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    447851 8uez:1n (3.5) BS01 EHZ N/A N/A K7GSE5 38811722
    447852 8uf3:A (2.45) BS01 HEC N/A N/A B4RQ30 38330683
    447853 8uf3:A (2.45) BS02 HEC N/A N/A B4RQ30 38330683
    447854 8uf3:B (2.45) BS01 HEC N/A N/A B4RQ30 38330683
    447855 8uf3:B (2.45) BS02 HEC N/A N/A B4RQ30 38330683
    447856 8uf5:A (2.5) BS02 WIJ 2.4.1.5 GO:0009250 ... P08987 28729722
    447857 8uf5:B (2.5) BS02 WIJ 2.4.1.5 GO:0009250 ... P08987 28729722
    447858 8uf6:A (2.9) BS01 WRZ N/A N/A P97438 N/A
    447859 8uf6:A (2.9) BS02 16C N/A N/A P97438 N/A
    447860 8uf6:B (2.9) BS01 WRZ N/A N/A P97438 N/A
    447861 8ufd:A (3.26) BS01 WJI N/A N/A A0A045GQW7 39231991
    447862 8ufd:B (3.26) BS01 WJI N/A N/A A0A045GQW7 39231991
    447863 8ufg:F (3.1) BS01 WJR ? GO:0005886 ... Q6FFD7 38172635
    447864 8ufg:G (3.1) BS01 WJR ? GO:0005886 ... Q6FFD6 38172635
    447865 8ufh:F (3.2) BS01 WJW ? GO:0005886 ... Q6FFD7 38172635
    447866 8ufh:F (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD7 38172635
    447867 8ufh:G (3.2) BS01 WJW ? GO:0005886 ... Q6FFD6 38172635
    447868 8ufh:G (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD6 38172635
    447869 8ufi:A (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    447870 8ufi:B (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    447871 8ufp:A (1.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    447872 8ufp:A (1.9) BS02 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    447873 8ufp:A (1.9) BS03 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    447874 8ufp:A (1.9) BS05 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    447875 8ufp:B (1.9) BS01 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    447876 8ufp:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    447877 8ufp:B (1.9) BS04 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    447878 8ufp:B (1.9) BS05 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    447879 8ufq:A (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    447880 8ufq:A (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447881 8ufq:A (1.98) BS04 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447882 8ufq:B (1.98) BS02 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447883 8ufq:B (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447884 8ufq:B (1.98) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    447885 8ufq:C (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    447886 8ufq:C (1.98) BS02 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447887 8ufq:C (1.98) BS04 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447888 8ufq:D (1.98) BS01 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447889 8ufq:D (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    447890 8ufq:D (1.98) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    447891 8ufr:A (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447892 8ufr:A (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447893 8ufr:A (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447894 8ufr:A (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447895 8ufr:B (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447896 8ufr:B (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447897 8ufr:B (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447898 8ufr:B (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447899 8ufr:C (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447900 8ufr:C (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447901 8ufr:C (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447902 8ufr:C (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447903 8ufr:D (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447904 8ufr:D (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447905 8ufr:D (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447906 8ufr:D (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447907 8ufs:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447908 8ufs:A (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447909 8ufs:A (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447910 8ufs:B (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447911 8ufs:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447912 8ufs:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447913 8ufs:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447914 8ufs:C (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447915 8ufs:C (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447916 8ufs:D (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447917 8ufs:D (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447918 8ufs:D (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447919 8uft:A (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447920 8uft:A (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447921 8uft:A (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447922 8uft:A (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447923 8uft:B (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447924 8uft:B (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447925 8uft:B (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447926 8uft:B (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447927 8uft:C (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447928 8uft:C (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447929 8uft:C (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447930 8uft:C (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447931 8uft:D (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447932 8uft:D (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447933 8uft:D (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    447934 8uft:D (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    447935 8ufu:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447936 8ufu:A (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447937 8ufu:A (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447938 8ufu:A (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447939 8ufu:B (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447940 8ufu:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447941 8ufu:B (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447942 8ufu:B (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447943 8ufu:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447944 8ufu:C (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447945 8ufu:C (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447946 8ufu:D (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447947 8ufu:D (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447948 8ufu:D (2.05) BS04 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    447949 8ufu:D (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    447950 8ufy:A (1.2) BS01 FMN N/A N/A Q44467 39149041
    447951 8ufy:A (1.2) BS02 LAC N/A N/A Q44467 39149041
    447952 8ufy:A (1.2) BS03 PYR N/A N/A Q44467 39149041
    447953 8ufy:B (1.2) BS01 FMN N/A N/A Q44467 39149041
    447954 8ufy:B (1.2) BS02 PYR N/A N/A Q44467 39149041
    447955 8ufy:B (1.2) BS03 LAC N/A N/A Q44467 39149041
    447956 8ug1:A (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    447957 8ug1:B (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    447958 8ug3:A (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    447959 8ug3:B (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    447960 8ugb:A (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    447961 8ugb:A (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P11541 38159849
    447962 8ugb:B (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    447963 8ugb:B (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P23439 38159849
    447964 8ugd:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447965 8ugd:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447966 8ugd:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447967 8ugd:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447968 8ugd:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    447969 8ugd:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    447970 8ugd:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447971 8ugd:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447972 8ugd:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447973 8ugd:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447974 8ugd:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    447975 8ugd:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    447976 8uge:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447977 8uge:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447978 8uge:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447979 8uge:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447980 8uge:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    447981 8uge:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    447982 8uge:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447983 8uge:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447984 8uge:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447985 8uge:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447986 8uge:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    447987 8uge:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    447988 8ugf:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447989 8ugf:3C (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447990 8ugf:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447991 8ugf:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447992 8ugf:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    447993 8ugf:3E (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    447994 8ugf:3P (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447995 8ugf:3P (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    447996 8ugf:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447997 8ugf:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    447998 8ugf:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    447999 8ugf:3R (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    448000 8ugg:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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