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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    446401 8trj:B (2.78) BS01 KD9 N/A N/A Q64663 39107314
    446402 8trj:B (2.78) BS02 GDP N/A N/A Q64663 39107314
    446403 8trj:B (2.78) BS05 KD9 N/A N/A Q64663 39107314
    446404 8trj:C (2.78) BS01 KD9 N/A N/A Q64663 39107314
    446405 8trj:C (2.78) BS02 KD9 N/A N/A Q64663 39107314
    446406 8trj:C (2.78) BS03 GDP N/A N/A Q64663 39107314
    446407 8trm:A (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    446408 8trm:B (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    446409 8trm:C (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    446410 8trn:A (3.0) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    446411 8trn:A (3.0) BS02 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    446412 8trn:A (3.0) BS03 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    446413 8trn:B (3.0) BS01 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    446414 8trn:B (3.0) BS02 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    446415 8trn:B (3.0) BS03 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    446416 8trn:C (3.0) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    446417 8trn:C (3.0) BS02 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    446418 8try:A (2.35) BS01 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    446419 8try:A (2.35) BS02 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    446420 8try:B (2.35) BS01 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    446421 8try:B (2.35) BS02 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    446422 8ts4:A (2.2) BS01 KFF 2.4.2.8 GO:0000166 ... Q07010 38651522
    446423 8ts4:B (2.2) BS01 KFF 2.4.2.8 GO:0000166 ... Q07010 38651522
    446424 8ts9:A (2.83) BS01 UE9 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    446425 8tsa:A (2.51) BS01 UIW 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    446426 8tsb:A (3.53) BS01 UIW 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    446427 8tsc:A (3.62) BS01 UJC 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    446428 8tsd:A (2.7) BS01 XUZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    446429 8tsh:A (3.1) BS01 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    446430 8tsh:A (3.1) BS02 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    446431 8tsh:B (3.1) BS01 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    446432 8tsh:B (3.1) BS02 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    446433 8tsi:A (4.4) BS01 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    446434 8tsi:A (4.4) BS02 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    446435 8tsi:A (4.4) BS03 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    446436 8tsi:A (4.4) BS04 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    446437 8tsi:B (4.4) BS01 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    446438 8tsi:B (4.4) BS02 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    446439 8tsi:B (4.4) BS03 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    446440 8tsi:B (4.4) BS04 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    446441 8tsn:A () BS01 QCV N/A N/A N/A N/A
    446442 8tso:A (2.68) BS01 KDL N/A GO:0005524 ... P60752 N/A
    446443 8tso:A (2.68) BS02 KDL N/A GO:0005524 ... P60752 N/A
    446444 8tso:B (2.68) BS01 KDL N/A GO:0005524 ... P60752 N/A
    446445 8tso:B (2.68) BS02 KDL N/A GO:0005524 ... P60752 N/A
    446446 8tt3:C (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    446447 8tt3:D (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    446448 8tt9:A (1.68) BS01 ENO N/A N/A P14174 N/A
    446449 8tt9:A (1.68) BS02 ENO N/A N/A P14174 N/A
    446450 8tt9:B (1.68) BS01 ENO N/A N/A P14174 N/A
    446451 8tt9:B (1.68) BS02 ENO N/A N/A P14174 N/A
    446452 8tt9:C (1.68) BS01 ENO N/A N/A P14174 N/A
    446453 8tt9:C (1.68) BS02 ENO N/A N/A P14174 N/A
    446454 8tti:A (1.98) BS01 TRP ? GO:0000166 ... M9QSI0 37662313
    446455 8tti:B (1.98) BS01 TRP ? GO:0000166 ... M9QSI0 37662313
    446456 8tti:C (1.98) BS01 FAD ? GO:0000166 ... M9QSI0 37662313
    446457 8tti:D (1.98) BS01 FAD ? GO:0000166 ... M9QSI0 37662313
    446458 8ttj:A (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    446459 8ttj:B (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    446460 8ttj:C (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    446461 8ttj:D (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    446462 8ttm:A (2.51) BS01 FUC N/A N/A P0DOX5 38598628
    446463 8ttm:B (2.51) BS01 BMA N/A N/A P0DOX5 38598628
    446464 8ttp:A (1.43) BS01 NXL 3.5.2.6 GO:0008800 ... A0A377KDY3 N/A
    446465 8ttp:B (1.43) BS01 NXL 3.5.2.6 GO:0008800 ... A0A377KDY3 N/A
    446466 8ttw:A (2.96) BS01 83J ? GO:0019031 ... Q2N0S6 37872202
    446467 8ttw:C (2.96) BS01 BMA N/A N/A N/A 37872202
    446468 8ttw:C (2.96) BS02 MAN N/A N/A N/A 37872202
    446469 8ttw:C (2.96) BS03 MAN N/A N/A N/A 37872202
    446470 8ttw:C (2.96) BS04 MAN N/A N/A N/A 37872202
    446471 8ttw:E (2.96) BS01 MAN ? GO:0019031 ... Q2N0S6 37872202
    446472 8ttw:E (2.96) BS02 83J ? GO:0019031 ... Q2N0S6 37872202
    446473 8ttw:G (2.96) BS01 BMA N/A N/A N/A 37872202
    446474 8ttw:G (2.96) BS02 MAN N/A N/A N/A 37872202
    446475 8ttw:G (2.96) BS03 MAN N/A N/A N/A 37872202
    446476 8ttw:G (2.96) BS04 MAN N/A N/A N/A 37872202
    446477 8ttw:I (2.96) BS01 MAN ? GO:0019031 ... Q2N0S6 37872202
    446478 8ttw:I (2.96) BS02 83J ? GO:0019031 ... Q2N0S6 37872202
    446479 8ttw:K (2.96) BS01 BMA N/A N/A N/A 37872202
    446480 8ttw:K (2.96) BS02 MAN N/A N/A N/A 37872202
    446481 8ttw:K (2.96) BS03 MAN N/A N/A N/A 37872202
    446482 8ttw:K (2.96) BS04 MAN N/A N/A N/A 37872202
    446483 8ttw:N (2.96) BS01 MAN N/A N/A N/A 37872202
    446484 8ttw:N (2.96) BS02 MAN N/A N/A N/A 37872202
    446485 8ttw:P (2.96) BS01 MAN N/A N/A N/A 37872202
    446486 8ttw:R (2.96) BS01 MAN N/A N/A N/A 37872202
    446487 8ttw:R (2.96) BS02 MAN N/A N/A N/A 37872202
    446488 8tty:A (2.101) BS01 QEC ? GO:0002224 ... B3Y653 38352830
    446489 8tty:A (2.101) BS02 QEC ? GO:0002224 ... B3Y653 38352830
    446490 8tty:B (2.101) BS01 QEC ? GO:0002224 ... B3Y653 38352830
    446491 8tty:B (2.101) BS02 QEC ? GO:0002224 ... B3Y653 38352830
    446492 8ttz:A (3.14) BS01 QCX ? GO:0002224 ... B3Y653 38352830
    446493 8ttz:A (3.14) BS02 QCX ? GO:0002224 ... B3Y653 38352830
    446494 8ttz:B (3.14) BS01 QCX ? GO:0002224 ... B3Y653 38352830
    446495 8ttz:B (3.14) BS02 QCX ? GO:0002224 ... B3Y653 38352830
    446496 8tu3:A (1.7) BS01 UEO N/A N/A Q06187 38712838
    446497 8tu4:A (1.6) BS01 V72 N/A N/A Q06187 38712838
    446498 8tu5:A (2.1) BS01 V7I N/A N/A Q06187 38712838
    446499 8tu9:A (3.26) BS01 ACO 2.3.1.78 GO:0003674 ... P42212
    Q68CP4    		 39196614
    446500 8tu9:B (3.26) BS01 ACO 2.3.1.78 GO:0003674 ... P42212
    Q68CP4    		 39196614
    446501 8tua:A (4.1) BS01 4IP ? GO:0005085 ... Q8TCU6 N/A
    446502 8tuc:A (1.5) BS01 O7I 2.7.11.17 GO:0004672 ... Q96RR4 38009718
    446503 8tud:B (3.0) BS01 BMA N/A N/A P0DOX5 38598628
    446504 8tun:C (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    446505 8tun:D (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    446506 8tv6:B (1.74) BS01 V83 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38592023
    446507 8tv7:A (1.5) BS01 VI1 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38592023
    446508 8tvk:A (1.04) BS01 GDP N/A N/A P01116 N/A
    446509 8tvm:A (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    446510 8tvm:B (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    446511 8tvm:C (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    446512 8tvm:D (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    446513 8tvn:A (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    446514 8tvn:B (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    446515 8tvn:C (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    446516 8tvn:D (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    446517 8tvt:A (2.0) BS01 PLP N/A N/A Q9Y697 N/A
    446518 8tvt:A (2.0) BS02 LPH N/A N/A Q9Y697 N/A
    446519 8tvt:B (2.0) BS01 EDT N/A N/A Q9HD34 N/A
    446520 8tvt:B (2.0) BS02 8Q1 N/A N/A Q9HD34 N/A
    446521 8tw7:2 (3.8) BS01 AGS N/A N/A P40348 N/A
    446522 8tw7:3 (3.8) BS01 AGS N/A N/A P38629 N/A
    446523 8tw7:4 (3.8) BS01 AGS N/A N/A P40339 N/A
    446524 8tw7:5 (3.8) BS01 ADP N/A N/A P38251 N/A
    446525 8tw8:2 (3.5) BS01 AGS N/A N/A P40348 N/A
    446526 8tw8:3 (3.5) BS01 AGS N/A N/A P38629 N/A
    446527 8tw8:4 (3.5) BS01 AGS N/A N/A P40339 N/A
    446528 8tw8:5 (3.5) BS01 AGS N/A N/A P38251 N/A
    446529 8tw8:5 (3.5) BS02 ADP N/A N/A P38251 N/A
    446530 8tw9:E (3.6) BS04 SF4 N/A N/A P21951 N/A
    446531 8twa:2 (4.1) BS01 AGS N/A N/A P40348 N/A
    446532 8twa:3 (4.1) BS01 AGS N/A N/A P38629 N/A
    446533 8twa:4 (4.1) BS01 AGS N/A N/A P40339 N/A
    446534 8twa:5 (4.1) BS01 AGS N/A N/A P38251 N/A
    446535 8twa:5 (4.1) BS02 ADP N/A N/A P38251 N/A
    446536 8twa:E (4.1) BS04 SF4 N/A N/A P21951 N/A
    446537 8twb:2 (3.2) BS02 AGS N/A N/A P40348 N/A
    446538 8twb:3 (3.2) BS01 AGS N/A N/A P38629 N/A
    446539 8twb:4 (3.2) BS01 AGS N/A N/A P40339 N/A
    446540 8twb:5 (3.2) BS02 AGS N/A N/A P38251 N/A
    446541 8twb:5 (3.2) BS03 ADP N/A N/A P38251 N/A
    446542 8twf:A (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    446543 8twf:B (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    446544 8twf:C (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    446545 8twf:D (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    446546 8twg:B (1.8) BS01 FAD N/A GO:0004497 ... A0A222NYA8 38493211
    446547 8twj:A (1.9) BS01 UDP ? GO:0005576 ... P13835 38354245
    446548 8twn:A (2.08) BS01 67I N/A N/A A0A861B387 N/A
    446549 8two:A (2.09) BS02 UDP ? GO:0005576 ... P13835 38354245
    446550 8two:A (2.09) BS03 RAM ? GO:0005576 ... P13835 38354245
    446551 8tws:A (2.85) BS02 AWU ? GO:0005576 ... P13835 38354245
    446552 8twt:A (2.3) BS01 67I N/A N/A A0A861B387 N/A
    446553 8twt:B (2.3) BS01 67I N/A N/A A0A861B387 N/A
    446554 8twu:A (1.84) BS01 HEM ? GO:0004497 ... A0A9X9ZA09 37611404
    446555 8twu:A (1.84) BS02 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    446556 8twu:A (1.84) BS03 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    446557 8twv:A (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446558 8twv:B (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446559 8twv:C (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446560 8twv:D (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446561 8twv:E (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446562 8tww:A (2.0) BS01 67I N/A N/A A0A861B387 N/A
    446563 8tww:B (2.0) BS01 67I N/A N/A A0A861B387 N/A
    446564 8twx:A (2.7) BS01 VI7 N/A N/A P09960 N/A
    446565 8twx:B (2.7) BS01 VI7 N/A N/A P09960 N/A
    446566 8twy:A (2.67) BS01 RNX N/A N/A P42336 N/A
    446567 8twz:A (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446568 8twz:B (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446569 8twz:C (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446570 8twz:D (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446571 8twz:E (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    446572 8tx0:A (2.0) BS01 VEU N/A N/A Q9NWZ3 38695469
    446573 8tx0:B (2.0) BS01 VEU N/A N/A Q9NWZ3 38695469
    446574 8tx9:A (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    446575 8tx9:A (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    446576 8tx9:B (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    446577 8tx9:B (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    446578 8tx9:B (2.01) BS03 BMX N/A N/A A0A064C3N8 N/A
    446579 8tx9:C (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    446580 8tx9:C (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    446581 8tx9:D (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    446582 8tx9:D (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    446583 8txe:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    446584 8txe:A (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    446585 8txe:B (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    446586 8txe:B (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    446587 8txg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    446588 8txg:A (1.5) BS02 VQT 3.6.5.2 GO:0003924 ... P01116 37849557
    446589 8txh:A (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    446590 8txh:A (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    446591 8txh:B (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    446592 8txh:B (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    446593 8txj:A (1.4) BS01 GDP N/A N/A P01116 N/A
    446594 8txk:A (1.38) BS01 GDP N/A N/A P01116 N/A
    446595 8txn:A (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    446596 8txn:A (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    446597 8txn:D (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    446598 8txn:D (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    446599 8txo:I (3.1) BS03 S9F 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    446600 8txo:J (3.1) BS06 S9F 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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