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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    444401 8sz3:A (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    444402 8sz3:B (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    444403 8sz6:A (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    444404 8sz6:B (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    444405 8sz6:B (1.65) BS02 XII 1.1.1.88 GO:0004420 ... P13702 38327055
    444406 8sz6:B (1.65) BS03 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    444407 8sz6:B (1.65) BS04 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    444408 8sz8:b (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    444409 8sz8:c (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    444410 8sz8:f (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    444411 8sz8:g (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    444412 8sza:A (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    444413 8sza:B (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    444414 8sza:C (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    444415 8sza:D (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    444416 8sza:E (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    444417 8sza:F (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    444418 8szc:C (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    444419 8szc:C (3.06) BS02 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    444420 8szc:D (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    444421 8sze:A (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    444422 8sze:B (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    444423 8szf:A (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    444424 8szf:A (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    444425 8szf:B (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    444426 8szf:B (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    444427 8szg:A (3.6) BS01 YP4 ? GO:0004930 ... P41180 38326620
    444428 8szg:A (3.6) BS03 TRP ? GO:0004930 ... P41180 38326620
    444429 8szg:B (3.6) BS01 CLR ? GO:0004930 ... P41180 38326620
    444430 8szg:B (3.6) BS02 TRP ? GO:0004930 ... P41180 38326620
    444431 8szg:B (3.6) BS03 YP4 ? GO:0004930 ... P41180 38326620
    444432 8szh:A (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    444433 8szh:A (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    444434 8szh:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    444435 8szh:B (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    444436 8szi:A (3.5) BS02 TRP ? GO:0004930 ... P41180 38326620
    444437 8szi:A (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    444438 8szi:B (3.5) BS01 CLR ? GO:0004930 ... P41180 38326620
    444439 8szi:B (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    444440 8szj:A (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444441 8szj:B (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444442 8szj:C (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444443 8szj:D (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444444 8szj:E (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444445 8szj:F (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444446 8szj:G (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444447 8szj:H (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444448 8szj:I (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444449 8szj:J (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444450 8szj:K (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444451 8szj:L (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    444452 8szm:A (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    444453 8szm:G (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    444454 8szm:X (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    444455 8szm:Y (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    444456 8szm:Z (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    444457 8szm:a (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    444458 8szn:H (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444459 8szn:I (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444460 8szn:J (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444461 8szn:K (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444462 8szn:L (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444463 8szn:L (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444464 8szn:M (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444465 8szn:M (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444466 8szn:N (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444467 8szn:N (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444468 8szn:V (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444469 8szn:V (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444470 8szn:W (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444471 8szn:W (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444472 8szn:X (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444473 8szn:Y (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444474 8szn:Z (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444475 8szn:Z (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444476 8szn:a (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444477 8szn:a (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444478 8szn:b (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    444479 8szn:b (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    444480 8szo:A (2.5) BS03 MMA N/A GO:0030246 ... N/A 28693997
    444481 8szp:A (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    444482 8szp:B (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    444483 8szq:A (2.711) BS01 ADP 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    444484 8szr:A (2.97) BS01 ADP 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    444485 8szs:A (2.38) BS01 GDP 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    444486 8szu:A (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    444487 8szu:A (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    444488 8szu:A (1.75) BS04 X4U ? GO:0000122 ... R8YPJ7 37624144
    444489 8szu:B (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    444490 8szu:B (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    444491 8szu:B (1.75) BS03 X4U ? GO:0000122 ... R8YPJ7 37624144
    444492 8szv:A (2.2) BS01 X1D ? GO:0003677 ... O75469 37729916
    444493 8t03:A (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    444494 8t03:A (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    444495 8t03:B (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    444496 8t03:B (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    444497 8t04:A (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    444498 8t04:A (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    444499 8t04:B (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    444500 8t04:B (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    444501 8t05:A (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    444502 8t05:A (3.22) BS03 LBN N/A GO:0016020 ... N/A 37770716
    444503 8t05:B (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    444504 8t05:B (3.22) BS03 LBN N/A GO:0016020 ... N/A 37770716
    444505 8t09:A (2.15) BS01 XHZ ? GO:0005856 ... O00522 37974623
    444506 8t09:B (2.15) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    444507 8t0c:A (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    444508 8t0c:B (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    444509 8t0c:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    444510 8t0c:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    444511 8t0e:A (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    444512 8t0e:B (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    444513 8t0e:C (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    444514 8t0e:D (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    444515 8t0k:b (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444516 8t0k:c (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444517 8t0k:f (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444518 8t0k:g (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444519 8t0n:A (1.86) BS01 Y0B 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    444520 8t0n:A (1.86) BS02 NAD 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    444521 8t0q:A (3.06) BS01 B12 N/A N/A Q8RBT2 N/A
    444522 8t0q:B (3.06) BS01 B12 N/A N/A Q8RBT2 N/A
    444523 8t0q:C (3.06) BS01 PLP N/A N/A Q8RBT3 N/A
    444524 8t0q:D (3.06) BS01 PLP N/A N/A Q8RBT3 N/A
    444525 8t0r:b (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444526 8t0r:c (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444527 8t0r:f (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444528 8t0r:g (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    444529 8t0t:A (1.75) BS01 Y6E 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    444530 8t0v:B (3.0) BS01 B12 N/A N/A Q8RBT2 N/A
    444531 8t0v:D (3.0) BS01 B12 N/A N/A Q8RBT3 N/A
    444532 8t0v:D (3.0) BS02 X6I N/A N/A Q8RBT3 N/A
    444533 8t0y:A (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    444534 8t0y:B (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    444535 8t0y:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    444536 8t0y:C (3.5) BS02 8IJ ? GO:0000122 ... O35433 38698206
    444537 8t0y:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    444538 8t0z:A (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444539 8t0z:B (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444540 8t0z:C (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444541 8t0z:D (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444542 8t0z:E (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444543 8t0z:F (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444544 8t0z:G (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444545 8t0z:H (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444546 8t0z:I (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444547 8t0z:J (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444548 8t0z:K (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444549 8t0z:L (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    444550 8t10:A (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    444551 8t10:B (3.7) BS01 8IJ ? GO:0000122 ... O35433 38698206
    444552 8t10:B (3.7) BS02 NKN ? GO:0000122 ... O35433 38698206
    444553 8t10:C (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    444554 8t10:D (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    444555 8t10:D (3.7) BS02 8IJ ? GO:0000122 ... O35433 38698206
    444556 8t14:A (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444557 8t14:B (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444558 8t14:C (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444559 8t14:D (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444560 8t14:E (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444561 8t14:F (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444562 8t14:G (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444563 8t1b:A (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444564 8t1b:A (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444565 8t1b:A (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444566 8t1b:A (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444567 8t1b:A (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444568 8t1b:A (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444569 8t1b:A (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444570 8t1b:A (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444571 8t1b:A (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444572 8t1b:A (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444573 8t1b:A (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444574 8t1b:B (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444575 8t1b:B (3.0) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444576 8t1b:B (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444577 8t1b:B (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444578 8t1b:B (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444579 8t1b:B (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444580 8t1b:B (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444581 8t1b:B (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444582 8t1b:B (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444583 8t1b:B (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444584 8t1b:B (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444585 8t1b:B (3.0) BS12 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444586 8t1b:C (3.0) BS01 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444587 8t1b:C (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444588 8t1b:C (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444589 8t1b:C (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444590 8t1b:C (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444591 8t1b:C (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444592 8t1b:C (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444593 8t1b:C (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444594 8t1b:C (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444595 8t1b:C (3.0) BS10 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444596 8t1b:C (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444597 8t1b:D (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444598 8t1b:D (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444599 8t1b:D (3.0) BS03 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444600 8t1b:D (3.0) BS04 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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