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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    442601 8shg:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442602 8shg:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442603 8shg:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    442604 8shg:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442605 8shg:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    442606 8shg:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    442607 8shg:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    442608 8shg:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442609 8shg:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    442610 8shg:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442611 8shg:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    442612 8shg:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442613 8shg:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    442614 8shg:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442615 8shg:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    442616 8shg:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442617 8shg:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442618 8shg:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442619 8shg:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    442620 8shg:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442621 8shg:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    442622 8shg:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442623 8shh:A (1.93) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    442624 8shh:B (1.93) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    442625 8shj:A (2.21) BS01 ZI8 ? GO:0045022 ... A4D1P6 37996079
    442626 8shj:B (2.21) BS01 ZI8 ? GO:0045022 ... A4D1P6 37996079
    442627 8shj:C (2.21) BS01 ZI8 ? GO:0045022 ... A4D1P6 37996079
    442628 8shk:C (1.71) BS01 ATP 2.7.7.86 N/A Q8C6L5 38740774
    442629 8shl:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442630 8shl:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442631 8shl:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442632 8shl:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442633 8shl:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442634 8shl:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442635 8shl:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442636 8shl:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442637 8shl:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442638 8shl:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442639 8shl:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442640 8shl:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442641 8shl:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442642 8shl:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442643 8shl:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442644 8shl:Z (3.0) BS03 AF3 ? GO:0003723 ... P40227 37852256
    442645 8shl:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442646 8shl:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442647 8shl:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442648 8shl:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442649 8shl:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442650 8shl:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442651 8shl:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442652 8shl:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442653 8shl:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442654 8shl:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442655 8shl:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442656 8shl:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442657 8shl:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442658 8shl:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442659 8shl:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442660 8shl:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442661 8shn:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    442662 8shn:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442663 8shn:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    442664 8shn:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442665 8shn:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    442666 8shn:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442667 8shn:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    442668 8shn:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442669 8shn:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    442670 8shn:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442671 8shn:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442672 8shn:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442673 8shn:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    442674 8shn:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442675 8shn:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    442676 8shn:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    442677 8shn:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    442678 8shn:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442679 8shn:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    442680 8shn:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442681 8shn:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    442682 8shn:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442683 8shn:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    442684 8shn:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442685 8shn:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    442686 8shn:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442687 8shn:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442688 8shn:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442689 8shn:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    442690 8shn:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442691 8shn:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    442692 8shn:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442693 8sho:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442694 8sho:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442695 8sho:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442696 8sho:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442697 8sho:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442698 8sho:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442699 8sho:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442700 8sho:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442701 8sho:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442702 8sho:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442703 8sho:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442704 8sho:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442705 8sho:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442706 8sho:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442707 8sho:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442708 8sho:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442709 8sho:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442710 8sho:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442711 8sho:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442712 8sho:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442713 8sho:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442714 8sho:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442715 8sho:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442716 8sho:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442717 8sho:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442718 8sho:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442719 8sho:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442720 8sho:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442721 8sho:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442722 8sho:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442723 8sho:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442724 8sho:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442725 8shp:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442726 8shp:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442727 8shp:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442728 8shp:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442729 8shp:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442730 8shp:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442731 8shp:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442732 8shp:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442733 8shp:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442734 8shp:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442735 8shp:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442736 8shp:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442737 8shp:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442738 8shp:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442739 8shp:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442740 8shp:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442741 8shp:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442742 8shp:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442743 8shp:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442744 8shp:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442745 8shp:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442746 8shp:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442747 8shp:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442748 8shp:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442749 8shp:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442750 8shp:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442751 8shp:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442752 8shp:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442753 8shp:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442754 8shp:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442755 8shp:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442756 8shp:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442757 8shq:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442758 8shq:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442759 8shq:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442760 8shq:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442761 8shq:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442762 8shq:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442763 8shq:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442764 8shq:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442765 8shq:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442766 8shq:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442767 8shq:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442768 8shq:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442769 8shq:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442770 8shq:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442771 8shq:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442772 8shq:Z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442773 8shq:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442774 8shq:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442775 8shq:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442776 8shq:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442777 8shq:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442778 8shq:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442779 8shq:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442780 8shq:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442781 8shq:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442782 8shq:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442783 8shq:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442784 8shq:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442785 8shq:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442786 8shq:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442787 8shq:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442788 8shq:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442789 8shr:A (1.92) BS01 HIY 2.1.1.319 GO:0016274 ... O60678 N/A
    442790 8sht:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442791 8sht:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442792 8sht:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442793 8sht:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442794 8sht:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442795 8sht:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442796 8sht:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442797 8sht:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442798 8sht:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442799 8sht:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442800 8sht:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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