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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    438401 8qaw:G (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438402 8qaw:H (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438403 8qaz:A (1.4) BS01 QA5 N/A N/A P55201 N/A
    438404 8qb0:A (1.45) BS01 Q9U N/A N/A P55201 N/A
    438405 8qb2:A (1.42) BS01 GKI N/A N/A P55201 N/A
    438406 8qba:A (1.39) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    438407 8qba:A (1.39) BS02 GEE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    438408 8qbb:A (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438409 8qbb:B (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438410 8qbb:C (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438411 8qbb:D (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438412 8qbb:E (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438413 8qbb:F (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438414 8qbb:G (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438415 8qbb:H (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438416 8qbb:I (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438417 8qbb:J (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438418 8qbb:K (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438419 8qbb:L (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438420 8qbb:M (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438421 8qbb:N (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438422 8qbc:A (1.23) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    438423 8qbc:A (1.23) BS02 GEE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    438424 8qbd:A (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438425 8qbd:A (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438426 8qbd:B (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438427 8qbd:B (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438428 8qbd:C (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438429 8qbd:C (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438430 8qbd:D (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438431 8qbd:D (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438432 8qbd:E (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438433 8qbd:E (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438434 8qbd:F (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438435 8qbd:F (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438436 8qbd:G (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438437 8qbd:G (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438438 8qbd:H (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438439 8qbd:H (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438440 8qbd:I (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438441 8qbd:I (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438442 8qbd:J (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438443 8qbd:J (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438444 8qbd:K (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438445 8qbd:K (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438446 8qbd:L (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438447 8qbd:L (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438448 8qbd:M (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438449 8qbd:M (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438450 8qbd:N (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    438451 8qbd:N (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    438452 8qbf:A (3.67) BS01 I3P N/A N/A P53252 39048819
    438453 8qbf:B (3.67) BS01 I3P N/A N/A P53252 39048819
    438454 8qbf:B (3.67) BS02 SEP N/A N/A P53252 39048819
    438455 8qbh:A (2.05) BS01 1NP ? N/A Q7MZT8 38491909
    438456 8qbk:E (2.99) BS03 AR6 ? GO:0051607 ... P0DV88 38788717
    438457 8qbk:E (2.99) BS04 AR6 ? GO:0051607 ... P0DV88 38788717
    438458 8qbk:T (2.99) BS04 AR6 ? GO:0051607 ... P0DV88 38788717
    438459 8qbk:T (2.99) BS05 AR6 ? GO:0051607 ... P0DV88 38788717
    438460 8qbl:E (2.66) BS03 NAD ? GO:0051607 ... P0DV88 38788717
    438461 8qbl:E (2.66) BS04 NAD ? GO:0051607 ... P0DV88 38788717
    438462 8qbl:F (2.66) BS03 NAD ? GO:0051607 ... P0DV88 38788717
    438463 8qbl:F (2.66) BS04 NAD ? GO:0051607 ... P0DV88 38788717
    438464 8qbl:H (2.66) BS02 NAD ? GO:0051607 ... P0DV88 38788717
    438465 8qbl:H (2.66) BS03 NAD ? GO:0051607 ... P0DV88 38788717
    438466 8qbl:T (2.66) BS03 NAD ? GO:0051607 ... P0DV88 38788717
    438467 8qbl:T (2.66) BS04 NAD ? GO:0051607 ... P0DV88 38788717
    438468 8qbm:E (3.09) BS03 AR6 ? GO:0051607 ... P0DV88 38788717
    438469 8qbm:E (3.09) BS04 AR6 ? GO:0051607 ... P0DV88 38788717
    438470 8qbm:F (3.09) BS03 AR6 ? GO:0051607 ... P0DV88 38788717
    438471 8qbm:F (3.09) BS04 AR6 ? GO:0051607 ... P0DV88 38788717
    438472 8qbm:H (3.09) BS02 AR6 ? GO:0051607 ... P0DV88 38788717
    438473 8qbm:H (3.09) BS03 AR6 ? GO:0051607 ... P0DV88 38788717
    438474 8qbm:T (3.09) BS04 AR6 ? GO:0051607 ... P0DV88 38788717
    438475 8qbm:T (3.09) BS05 AR6 ? GO:0051607 ... P0DV88 38788717
    438476 8qbq:A (1.81) BS05 HEC N/A N/A Q8EG34 39158169
    438477 8qbq:A (1.81) BS06 HEC N/A N/A Q8EG34 39158169
    438478 8qbq:A (1.81) BS07 HEC N/A N/A Q8EG34 39158169
    438479 8qbq:A (1.81) BS08 HEC N/A N/A Q8EG34 39158169
    438480 8qbq:A (1.81) BS09 HEC N/A N/A Q8EG34 39158169
    438481 8qbq:A (1.81) BS10 HEC N/A N/A Q8EG34 39158169
    438482 8qbq:A (1.81) BS11 HEC N/A N/A Q8EG34 39158169
    438483 8qbq:A (1.81) BS12 HEC N/A N/A Q8EG34 39158169
    438484 8qbq:A (1.81) BS13 HEC N/A N/A Q8EG34 39158169
    438485 8qbq:A (1.81) BS14 HEC N/A N/A Q8EG34 39158169
    438486 8qbu:A (1.09) BS01 42J 2.7.11.1 GO:0000785 ... P19784 N/A
    438487 8qbu:A (1.09) BS02 3NG 2.7.11.1 GO:0000785 ... P19784 N/A
    438488 8qby:B (2.3) BS01 SF4 N/A N/A A1B497 N/A
    438489 8qby:D (2.3) BS02 SF4 N/A N/A A1B495 N/A
    438490 8qby:E (2.3) BS01 FES N/A N/A A1B494 N/A
    438491 8qby:F (2.3) BS01 FMN N/A N/A A1B491 N/A
    438492 8qby:F (2.3) BS02 SF4 N/A N/A A1B491 N/A
    438493 8qby:G (2.3) BS01 SF4 N/A N/A A1B489 N/A
    438494 8qby:G (2.3) BS02 SF4 N/A N/A A1B489 N/A
    438495 8qby:G (2.3) BS03 FES N/A N/A A1B489 N/A
    438496 8qby:H (2.3) BS01 P5S N/A N/A A1B487 N/A
    438497 8qby:H (2.3) BS02 U10 N/A N/A A1B487 N/A
    438498 8qby:I (2.3) BS01 SF4 N/A N/A A1B486 N/A
    438499 8qby:I (2.3) BS02 SF4 N/A N/A A1B486 N/A
    438500 8qby:I (2.3) BS03 P5S N/A N/A A1B486 N/A
    438501 8qby:L (2.3) BS01 P5S N/A N/A A1B481 N/A
    438502 8qby:q (2.3) BS01 P5S N/A N/A A1B1H8 N/A
    438503 8qbz:A (1.9) BS01 HEC N/A N/A Q8EG34 39158169
    438504 8qbz:A (1.9) BS02 HEC N/A N/A Q8EG34 39158169
    438505 8qbz:A (1.9) BS03 HEC N/A N/A Q8EG34 39158169
    438506 8qbz:A (1.9) BS04 HEC N/A N/A Q8EG34 39158169
    438507 8qbz:A (1.9) BS05 HEC N/A N/A Q8EG34 39158169
    438508 8qbz:A (1.9) BS06 HEC N/A N/A Q8EG34 39158169
    438509 8qbz:A (1.9) BS07 HEC N/A N/A Q8EG34 39158169
    438510 8qbz:A (1.9) BS08 HEC N/A N/A Q8EG34 39158169
    438511 8qbz:A (1.9) BS09 HEC N/A N/A Q8EG34 39158169
    438512 8qbz:A (1.9) BS10 HEC N/A N/A Q8EG34 39158169
    438513 8qc0:A (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    438514 8qc0:B (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    438515 8qc0:C (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    438516 8qc0:D (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    438517 8qc1:L (2.5) BS01 P5S N/A N/A A1B481 N/A
    438518 8qc2:A (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438519 8qc2:A (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    438520 8qc2:B (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438521 8qc2:B (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    438522 8qc2:C (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438523 8qc2:C (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    438524 8qc2:D (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438525 8qc2:D (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    438526 8qc3:A (2.65) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    438527 8qc3:B (2.65) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    438528 8qc4:A (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5    		 GO:0000162 ... P9WFX1 38004425
    438529 8qc4:B (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5    		 GO:0000162 ... P9WFX1 38004425
    438530 8qc5:A (1.95) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    438531 8qc5:B (1.95) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    438532 8qc6:A (2.4) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    438533 8qc6:A (2.4) BS02 R7R ? GO:0000166 ... A0A1C9WRL0 38100472
    438534 8qc6:B (2.4) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    438535 8qc6:B (2.4) BS02 R7R ? GO:0000166 ... A0A1C9WRL0 38100472
    438536 8qc7:A (2.03) BS01 CDM N/A N/A B7LXC3 N/A
    438537 8qc7:A (2.03) BS02 ADP N/A N/A B7LXC3 N/A
    438538 8qc7:B (2.03) BS01 CDM N/A N/A B7LXC3 N/A
    438539 8qc7:B (2.03) BS02 ADP N/A N/A B7LXC3 N/A
    438540 8qc8:A (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438541 8qc8:B (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438542 8qc8:C (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438543 8qc8:D (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    438544 8qc9:A (2.0) BS01 HEC N/A N/A Q8EG34 39158169
    438545 8qc9:A (2.0) BS02 HEC N/A N/A Q8EG34 39158169
    438546 8qc9:A (2.0) BS03 HEC N/A N/A Q8EG34 39158169
    438547 8qc9:A (2.0) BS04 HEC N/A N/A Q8EG34 39158169
    438548 8qc9:A (2.0) BS05 HEC N/A N/A Q8EG34 39158169
    438549 8qc9:A (2.0) BS06 HEC N/A N/A Q8EG34 39158169
    438550 8qc9:A (2.0) BS07 HEC N/A N/A Q8EG34 39158169
    438551 8qc9:A (2.0) BS08 HEC N/A N/A Q8EG34 39158169
    438552 8qc9:A (2.0) BS09 HEC N/A N/A Q8EG34 39158169
    438553 8qc9:A (2.0) BS10 HEC N/A N/A Q8EG34 39158169
    438554 8qcc:A (1.9) BS01 ADP N/A N/A B7LXC3 N/A
    438555 8qcc:A (1.9) BS02 UKO N/A N/A B7LXC3 N/A
    438556 8qcc:B (1.9) BS01 ADP N/A N/A B7LXC3 N/A
    438557 8qcc:B (1.9) BS02 UKO N/A N/A B7LXC3 N/A
    438558 8qcd:A (1.03) BS01 TBS 2.7.11.1 GO:0000785 ... P19784 N/A
    438559 8qcf:M (2.55) BS02 ATP 3.6.4.13 GO:0003676 ... P35207 37879335
    438560 8qcg:A (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    438561 8qcg:B (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    438562 8qch:A (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438563 8qch:B (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438564 8qch:C (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438565 8qch:D (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438566 8qch:E (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438567 8qch:F (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438568 8qch:G (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438569 8qch:H (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    438570 8qcj:A (2.9) BS01 FAD 1.8.1.15 GO:0000166 ... C0ZY75 38372589
    438571 8qcj:B (2.9) BS01 FAD 1.8.1.15 GO:0000166 ... C0ZY75 38372589
    438572 8qcl:A (1.84) BS01 GCU ? N/A A6KWT9 38179933
    438573 8qcl:B (1.84) BS01 GCU ? N/A A6KWT9 38179933
    438574 8qcn:A (1.86) BS01 ADP N/A N/A B7LXC3 N/A
    438575 8qcn:A (1.86) BS02 QB9 N/A N/A B7LXC3 N/A
    438576 8qcn:B (1.86) BS01 ADP N/A N/A B7LXC3 N/A
    438577 8qcn:B (1.86) BS02 QB9 N/A N/A B7LXC3 N/A
    438578 8qco:A (1.55) BS01 ADP N/A N/A B7LXC3 N/A
    438579 8qco:A (1.55) BS02 QBI N/A N/A B7LXC3 N/A
    438580 8qco:B (1.55) BS01 ADP N/A N/A B7LXC3 N/A
    438581 8qco:B (1.55) BS02 QBI N/A N/A B7LXC3 N/A
    438582 8qct:A (2.6) BS01 CHT ? GO:0001568 ... Q9Y5Y0 38778100
    438583 8qcu:A (1.15) BS01 VHL 3.2.1.17 GO:0003796 ... P00698 38639558
    438584 8qcu:A (1.15) BS02 REI 3.2.1.17 GO:0003796 ... P00698 38639558
    438585 8qcu:A (1.15) BS03 VHL 3.2.1.17 GO:0003796 ... P00698 38639558
    438586 8qcz:A (3.1) BS01 HEM N/A N/A Q9UPI3 N/A
    438587 8qd0:A (2.8) BS01 CHT ? GO:0005739 ... Q9UPI3 38778100
    438588 8qd2:A (1.75) BS01 QPI 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438589 8qd2:B (1.75) BS01 QPI 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438590 8qd2:C (1.75) BS01 QPI 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438591 8qd2:D (1.75) BS01 QPI 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438592 8qd3:A (1.7) BS01 QW8 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438593 8qd3:A (1.7) BS02 FLV 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438594 8qd3:A (1.7) BS03 FLV 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438595 8qd3:B (1.7) BS01 QW8 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438596 8qd3:B (1.7) BS02 FLV 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438597 8qd3:B (1.7) BS03 FLV 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438598 8qd3:C (1.7) BS01 QW8 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438599 8qd3:C (1.7) BS02 FLV 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    438600 8qd3:C (1.7) BS03 FLV 3.7.1.- GO:0003674 ... Q4WZB3 38491909
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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