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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    438001 8q47:I (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438002 8q47:I (2.9) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438003 8q47:O (2.9) BS01 DGT ? GO:0005737 ... P34942 38870289
    438004 8q47:P (2.9) BS01 NDP ? GO:0005739 ... P34943 38870289
    438005 8q47:T (2.9) BS01 EHZ ? GO:0000035 ... P52505 38870289
    438006 8q47:U (2.9) BS01 EHZ ? GO:0000035 ... P52505 38870289
    438007 8q47:W (2.9) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    438008 8q47:n (2.9) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    438009 8q48:B (2.5) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    438010 8q48:B (2.5) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    438011 8q48:D (2.5) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    438012 8q48:D (2.5) BS02 U10 7.1.1.2 GO:0003954 ... P17694 38870289
    438013 8q48:E (2.5) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    438014 8q48:F (2.5) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    438015 8q48:F (2.5) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    438016 8q48:G (2.5) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    438017 8q48:G (2.5) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    438018 8q48:G (2.5) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    438019 8q48:H (2.5) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    438020 8q48:I (2.5) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438021 8q48:I (2.5) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438022 8q48:O (2.5) BS01 DGT ? GO:0005737 ... P34942 38870289
    438023 8q48:P (2.5) BS01 NDP ? GO:0005739 ... P34943 38870289
    438024 8q48:W (2.5) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    438025 8q48:n (2.5) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    438026 8q49:B (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    438027 8q49:D (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    438028 8q49:E (2.6) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    438029 8q49:F (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    438030 8q49:F (2.6) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    438031 8q49:G (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    438032 8q49:G (2.6) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    438033 8q49:G (2.6) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    438034 8q49:I (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438035 8q49:I (2.6) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438036 8q49:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    438037 8q49:P (2.6) BS01 FVH ? GO:0005739 ... P34943 38870289
    438038 8q49:U (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    438039 8q49:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    438040 8q49:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    438041 8q4a:B (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    438042 8q4a:B (2.6) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    438043 8q4a:D (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    438044 8q4a:E (2.6) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    438045 8q4a:F (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    438046 8q4a:F (2.6) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    438047 8q4a:G (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    438048 8q4a:G (2.6) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    438049 8q4a:G (2.6) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    438050 8q4a:H (2.6) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    438051 8q4a:I (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438052 8q4a:I (2.6) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    438053 8q4a:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    438054 8q4a:P (2.6) BS01 NDP ? GO:0005739 ... P34943 38870289
    438055 8q4a:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    438056 8q4a:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    438057 8q4b:A (1.28) BS01 JCI N/A N/A P11838 N/A
    438058 8q4d:E (3.62) BS01 ADP N/A GO:0005524 ... Q45619 38926614
    438059 8q4d:F (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438060 8q4d:G (3.62) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    438061 8q4d:H (3.62) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    438062 8q4d:I (3.62) BS03 ATP N/A GO:0005524 ... Q45619 38926614
    438063 8q4d:J (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438064 8q4d:K (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438065 8q4d:L (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438066 8q4d:M (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438067 8q4d:N (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438068 8q4d:O (3.62) BS01 ADP N/A GO:0005524 ... Q45619 38926614
    438069 8q4d:P (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438070 8q4d:Q (3.62) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    438071 8q4d:R (3.62) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    438072 8q4d:S (3.62) BS03 ATP N/A GO:0005524 ... Q45619 38926614
    438073 8q4d:T (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438074 8q4d:U (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438075 8q4d:V (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438076 8q4d:W (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438077 8q4d:X (3.62) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    438078 8q4h:A (2.83) BS01 JYF 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438079 8q4h:A (2.83) BS02 COB 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438080 8q4h:A (2.83) BS03 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438081 8q4h:A (2.83) BS04 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438082 8q4h:A (2.83) BS05 MQ7 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438083 8q4h:B (2.83) BS01 JYF 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438084 8q4h:B (2.83) BS02 COB 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438085 8q4h:B (2.83) BS03 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438086 8q4h:B (2.83) BS04 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438087 8q4h:B (2.83) BS05 MQ7 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    438088 8q4m:A (1.43) BS01 J9B ? GO:0003723 ... Q96MU7 38787793
    438089 8q4m:B (1.43) BS01 J9B ? GO:0003723 ... Q96MU7 38787793
    438090 8q4n:A (1.42) BS01 JIR ? GO:0003723 ... Q96MU7 38787793
    438091 8q4n:B (1.42) BS01 JIR ? GO:0003723 ... Q96MU7 38787793
    438092 8q4p:A (1.43) BS01 JII ? GO:0003723 ... Q96MU7 38787793
    438093 8q4p:B (1.43) BS01 JII ? GO:0003723 ... Q96MU7 38787793
    438094 8q4q:A (1.4) BS01 JIB ? GO:0003723 ... Q96MU7 38787793
    438095 8q4q:B (1.4) BS01 JIB ? GO:0003723 ... Q96MU7 38787793
    438096 8q4r:A (1.43) BS01 JHU ? GO:0003723 ... Q96MU7 38787793
    438097 8q4r:B (1.43) BS01 JHU ? GO:0003723 ... Q96MU7 38787793
    438098 8q4s:A (2.08) BS01 E7P N/A N/A Q8YI30 N/A
    438099 8q4t:A (1.51) BS01 JBD ? GO:0003723 ... Q96MU7 38787793
    438100 8q4t:B (1.51) BS01 JBD ? GO:0003723 ... Q96MU7 38787793
    438101 8q4u:A (1.37) BS01 JA0 ? GO:0003723 ... Q96MU7 38787793
    438102 8q4u:B (1.37) BS01 JA0 ? GO:0003723 ... Q96MU7 38787793
    438103 8q4v:A (1.36) BS01 JO0 ? GO:0003723 ... Q96MU7 38787793
    438104 8q4v:B (1.36) BS01 JO0 ? GO:0003723 ... Q96MU7 38787793
    438105 8q4w:A (1.61) BS01 JNC ? GO:0003723 ... Q96MU7 38787793
    438106 8q4w:B (1.61) BS01 JNC ? GO:0003723 ... Q96MU7 38787793
    438107 8q50:A (1.91) BS01 FES 1.18.6.1 GO:0005524 ... P25767 38696373
    438108 8q54:A (2.39) BS01 JCV N/A N/A P80184 N/A
    438109 8q54:A (2.39) BS02 JCV N/A N/A P80184 N/A
    438110 8q54:B (2.39) BS02 JCV N/A N/A Q59584 N/A
    438111 8q54:C (2.39) BS01 JCV N/A N/A P80185 N/A
    438112 8q54:C (2.39) BS02 JCV N/A N/A P80185 N/A
    438113 8q54:E (2.39) BS01 COM N/A N/A P80186 N/A
    438114 8q54:E (2.39) BS02 JCV N/A N/A P80186 N/A
    438115 8q54:E (2.39) BS03 JCV N/A N/A P80186 N/A
    438116 8q54:E (2.39) BS04 JCV N/A N/A P80186 N/A
    438117 8q54:F (2.39) BS01 JCV N/A N/A Q50773 N/A
    438118 8q54:F (2.39) BS02 JCV N/A N/A Q50773 N/A
    438119 8q54:G (2.39) BS01 JCV N/A N/A Q50774 N/A
    438120 8q54:G (2.39) BS02 JCV N/A N/A Q50774 N/A
    438121 8q54:Q (2.39) BS01 JCV N/A N/A P80184 N/A
    438122 8q54:Q (2.39) BS02 JCV N/A N/A P80184 N/A
    438123 8q54:R (2.39) BS02 JCV N/A N/A Q59584 N/A
    438124 8q54:S (2.39) BS01 JCV N/A N/A P80185 N/A
    438125 8q54:U (2.39) BS01 JCV N/A N/A P80186 N/A
    438126 8q54:U (2.39) BS02 COM N/A N/A P80186 N/A
    438127 8q54:U (2.39) BS03 JCV N/A N/A P80186 N/A
    438128 8q54:U (2.39) BS04 JCV N/A N/A P80186 N/A
    438129 8q54:U (2.39) BS05 JCV N/A N/A P80186 N/A
    438130 8q54:V (2.39) BS01 JCV N/A N/A Q50773 N/A
    438131 8q54:V (2.39) BS02 JCV N/A N/A Q50773 N/A
    438132 8q54:W (2.39) BS01 JCV N/A N/A Q50774 N/A
    438133 8q54:a (2.39) BS01 JCV N/A N/A P80184 N/A
    438134 8q54:a (2.39) BS02 JCV N/A N/A P80184 N/A
    438135 8q54:b (2.39) BS02 JCV N/A N/A Q59584 N/A
    438136 8q54:c (2.39) BS01 JCV N/A N/A P80185 N/A
    438137 8q54:c (2.39) BS02 JCV N/A N/A P80185 N/A
    438138 8q54:e (2.39) BS01 JCV N/A N/A P80186 N/A
    438139 8q54:e (2.39) BS02 COM N/A N/A P80186 N/A
    438140 8q54:e (2.39) BS03 JCV N/A N/A P80186 N/A
    438141 8q54:e (2.39) BS04 JCV N/A N/A P80186 N/A
    438142 8q54:e (2.39) BS05 JCV N/A N/A P80186 N/A
    438143 8q54:f (2.39) BS01 JCV N/A N/A Q50773 N/A
    438144 8q54:g (2.39) BS01 JCV N/A N/A Q50774 N/A
    438145 8q56:A (3.5) BS01 SAM N/A N/A A0A6C7IK61 39174540
    438146 8q59:A (2.0) BS02 JP9 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    438147 8q59:B (2.0) BS02 JP9 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    438148 8q5e:A (2.4) BS01 FMN ? GO:0000166 ... Q88E39 38048072
    438149 8q5e:B (2.4) BS01 FMN ? GO:0000166 ... Q88E39 38048072
    438150 8q5f:A (2.0) BS01 FMN N/A N/A N/A 38048072
    438151 8q5f:B (2.0) BS01 FMN N/A N/A N/A 38048072
    438152 8q5g:A (2.0) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    438153 8q5g:A (2.0) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    438154 8q5g:B (2.0) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    438155 8q5g:B (2.0) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    438156 8q5i:AK (2.45) BS03 K16 ? GO:0003723 ... A0A1D8PF45 N/A
    438157 8q5j:A (1.48) BS01 HEM ? GO:0004497 ... A0A100JTL7 N/A
    438158 8q5k:A (2.8) BS01 JTI ? N/A Q9I4X0 38170170
    438159 8q5l:A (2.9) BS01 JVO ? N/A Q9I4X0 38170170
    438160 8q5p:A (1.814) BS05 SAM 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    438161 8q5t:A (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438162 8q5t:B (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438163 8q5t:C (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438164 8q5t:D (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438165 8q5u:D (3.0) BS01 BMA N/A GO:0004553 ... T1WGN1 38569940
    438166 8q5u:D (3.0) BS02 MAN N/A GO:0004553 ... T1WGN1 38569940
    438167 8q5u:D (3.0) BS03 FUC N/A GO:0004553 ... T1WGN1 38569940
    438168 8q5u:F (3.0) BS01 BMA N/A GO:0004553 ... T1WGN1 38569940
    438169 8q5u:F (3.0) BS02 MAN N/A GO:0004553 ... T1WGN1 38569940
    438170 8q5u:F (3.0) BS03 FUC N/A GO:0004553 ... T1WGN1 38569940
    438171 8q5v:A (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438172 8q5v:A (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438173 8q5v:B (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438174 8q5v:B (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438175 8q5v:C (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438176 8q5v:C (2.74) BS03 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438177 8q5v:D (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438178 8q5v:D (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438179 8q5v:E (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438180 8q5v:E (2.74) BS03 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438181 8q5v:F (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438182 8q5v:F (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438183 8q5v:G (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438184 8q5v:G (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438185 8q5v:H (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438186 8q5v:H (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438187 8q5v:J (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438188 8q5v:J (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438189 8q5v:K (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438190 8q5v:K (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438191 8q5v:L (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438192 8q5v:L (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438193 8q5v:M (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    438194 8q5v:M (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    438195 8q5w:A (2.49) BS01 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438196 8q5w:A (2.49) BS02 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438197 8q5w:B (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438198 8q5w:B (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438199 8q5w:C (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438200 8q5w:C (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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