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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    427601 8j07:PQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427602 8j07:PR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427603 8j07:PS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427604 8j07:PT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427605 8j07:PU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427606 8j07:PV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427607 8j07:PW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427608 8j07:PX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427609 8j07:PY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427610 8j07:QA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427611 8j07:QB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427612 8j07:QB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427613 8j07:QC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427614 8j07:QD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427615 8j07:QE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427616 8j07:QF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427617 8j07:QG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427618 8j07:QH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427619 8j07:QI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427620 8j07:QJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427621 8j07:QJ (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427622 8j07:QK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427623 8j07:QL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427624 8j07:QM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427625 8j07:QN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427626 8j07:QN (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427627 8j07:QO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427628 8j07:QP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427629 8j07:QP (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427630 8j07:QQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427631 8j07:QR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427632 8j07:QS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427633 8j07:QT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427634 8j07:QU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427635 8j07:QV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427636 8j07:QW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427637 8j07:QX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427638 8j07:QX (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427639 8j07:QY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427640 8j07:RA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427641 8j07:RB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427642 8j07:RB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427643 8j07:RC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427644 8j07:RD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427645 8j07:RE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427646 8j07:RF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427647 8j07:RF (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427648 8j07:RG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427649 8j07:RH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427650 8j07:RI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427651 8j07:RJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427652 8j07:RK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427653 8j07:RL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427654 8j07:RL (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427655 8j07:RM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427656 8j07:RN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427657 8j07:RO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427658 8j07:RP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427659 8j07:RP (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427660 8j07:RQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427661 8j07:RR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427662 8j07:RR (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427663 8j07:RS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427664 8j07:RT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427665 8j07:RT (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427666 8j07:RU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427667 8j07:RV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427668 8j07:RW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427669 8j07:RX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427670 8j07:RY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427671 8j07:SB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427672 8j07:SB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427673 8j07:SC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427674 8j07:SD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427675 8j07:SE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427676 8j07:SF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427677 8j07:SG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427678 8j07:SH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427679 8j07:SI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427680 8j07:SJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427681 8j07:SK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427682 8j07:SL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427683 8j07:SM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427684 8j07:SN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427685 8j07:SO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427686 8j07:SP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427687 8j07:SP (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427688 8j07:SQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427689 8j07:SR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427690 8j07:SS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427691 8j07:ST (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427692 8j07:SU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427693 8j07:SV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427694 8j07:SW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427695 8j07:SX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427696 8j07:SY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427697 8j07:TB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427698 8j07:TC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427699 8j07:TD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427700 8j07:TE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427701 8j07:TF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427702 8j07:TG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427703 8j07:TH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427704 8j07:TI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427705 8j07:TJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427706 8j07:TK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427707 8j07:TL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427708 8j07:TM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427709 8j07:TN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427710 8j07:TO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427711 8j07:TP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427712 8j07:TQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427713 8j07:TR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427714 8j07:TS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427715 8j07:TT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427716 8j07:TU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427717 8j07:TV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427718 8j07:TW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427719 8j07:TX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427720 8j07:TY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427721 8j07:TZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427722 8j07:UB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427723 8j07:UC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427724 8j07:UD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427725 8j07:UE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427726 8j07:UF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427727 8j07:UG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427728 8j07:UH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427729 8j07:UI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427730 8j07:UJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427731 8j07:UK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427732 8j07:UL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427733 8j07:UM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427734 8j07:UN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427735 8j07:UO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427736 8j07:UP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427737 8j07:UQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427738 8j07:UR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427739 8j07:US (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427740 8j07:UT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427741 8j07:UU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427742 8j07:UV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427743 8j07:UW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427744 8j07:UX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427745 8j07:UY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427746 8j07:UZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427747 8j07:VB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427748 8j07:VC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427749 8j07:VD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427750 8j07:VE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427751 8j07:VF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427752 8j07:VG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427753 8j07:VH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427754 8j07:VI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427755 8j07:VJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427756 8j07:VK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427757 8j07:VL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427758 8j07:VM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427759 8j07:VN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427760 8j07:VN (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427761 8j07:VO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427762 8j07:VP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427763 8j07:VQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427764 8j07:VR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427765 8j07:VR (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427766 8j07:VS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427767 8j07:VT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427768 8j07:VU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427769 8j07:VV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427770 8j07:VW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427771 8j07:VX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427772 8j07:VY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427773 8j07:VZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427774 8j07:WA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427775 8j07:WB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427776 8j07:WC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427777 8j07:WD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427778 8j07:WE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427779 8j07:WF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427780 8j07:WG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427781 8j07:WH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427782 8j07:WI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427783 8j07:WJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427784 8j07:WK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427785 8j07:WL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427786 8j07:WM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427787 8j07:WN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427788 8j07:WO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427789 8j07:WP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427790 8j07:WQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427791 8j07:WR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427792 8j07:WS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427793 8j07:WT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427794 8j07:WU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427795 8j07:WV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427796 8j07:WW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427797 8j07:WX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427798 8j0d:3 (3.19) BS01 CLA ? GO:0009416 ... B8BUU4 37878698
    427799 8j0d:3 (3.19) BS02 CLA ? GO:0009416 ... B8BUU4 37878698
    427800 8j0d:3 (3.19) BS03 CLA ? GO:0009416 ... B8BUU4 37878698
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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