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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    427001 8iyj:RP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427002 8iyj:SA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427003 8iyj:SB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427004 8iyj:SC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427005 8iyj:SD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427006 8iyj:SE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427007 8iyj:SF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427008 8iyj:SG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427009 8iyj:SH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427010 8iyj:SI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427011 8iyj:SJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427012 8iyj:SK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427013 8iyj:SL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427014 8iyj:SM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427015 8iyj:SN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427016 8iyj:TA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427017 8iyj:TB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427018 8iyj:TC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427019 8iyj:TD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427020 8iyj:TE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427021 8iyj:TF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427022 8iyj:TG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427023 8iyj:TH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427024 8iyj:TI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427025 8iyj:TJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427026 8iyj:TK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427027 8iyj:TL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427028 8iyj:TM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427029 8iyj:TN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427030 8iyj:UA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427031 8iyj:UB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427032 8iyj:UC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427033 8iyj:UD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427034 8iyj:UE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427035 8iyj:UF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427036 8iyj:UG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427037 8iyj:UH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427038 8iyj:UI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427039 8iyj:UJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427040 8iyj:UK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427041 8iyj:UL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427042 8iyj:UM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427043 8iyj:UN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427044 8iyj:UO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427045 8iyj:VA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427046 8iyj:VB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427047 8iyj:VC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427048 8iyj:VD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427049 8iyj:VE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427050 8iyj:VF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427051 8iyj:VG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427052 8iyj:VH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427053 8iyj:VI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427054 8iyj:VJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427055 8iyj:VK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427056 8iyj:VL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427057 8iyj:VM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427058 8iyj:VN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427059 8iyj:VO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427060 8iyj:WA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427061 8iyj:WB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427062 8iyj:WC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427063 8iyj:WD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427064 8iyj:WE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427065 8iyj:WF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427066 8iyj:WG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427067 8iyj:WH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427068 8iyj:WI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427069 8iyj:WJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427070 8iyj:WK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427071 8iyj:WL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427072 8iyj:WM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427073 8iyj:WN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427074 8iyj:WO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    427075 8iyj:WP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427076 8iyk:L (2.95) BS01 SF4 ? GO:0030430 ... P03738 37918400
    427077 8iyk:N (2.95) BS01 SF4 ? GO:0030430 ... P03738 37918400
    427078 8iyk:f (2.95) BS01 SF4 ? GO:0030430 ... P03738 37918400
    427079 8iyl:G (3.0) BS01 SF4 ? GO:0030430 ... P03738 37918400
    427080 8iyl:L (3.0) BS01 SF4 ? GO:0030430 ... P03738 37918400
    427081 8iyl:d (3.0) BS01 SF4 ? GO:0030430 ... P03738 37918400
    427082 8iyn:A (2.081) BS01 FMN 2.7.11.1 N/A A0A1Y1HNG4 N/A
    427083 8iyo:A (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    427084 8iyo:B (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    427085 8iyo:C (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    427086 8iyo:D (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    427087 8iyp:A (1.651) BS01 PLS 2.3.1.50 GO:0004758 ... A7BFV6 N/A
    427088 8iys:A (2.95) BS01 GDP ? GO:0001664 ... P50148 37286793
    427089 8iys:R (2.95) BS01 YN9 ? GO:0001818 ... Q5NUL3 37286793
    427090 8iyt:A (1.7) BS01 S5R 2.3.1.50 GO:0004758 ... A7BFV6 N/A
    427091 8iyv:A (2.1) BS02 FO9 N/A N/A P00760 39216203
    427092 8iyw:R (3.45) BS01 OKL ? GO:0001781 ... P08173
    Q8TDS4    		 38431681
    427093 8iyx:C (3.34) BS01 S6R ? GO:0004930 ... Q9UPC5 37733739
    427094 8iz4:R (2.93) BS01 TJR ? GO:0004930 ... Q9UPC5 N/A
    427095 8iz4:R (2.93) BS02 SER ? GO:0004930 ... Q9UPC5 N/A
    427096 8iz4:R (2.93) BS03 CLR ? GO:0004930 ... Q9UPC5 N/A
    427097 8iz7:A (3.8) BS01 SUZ 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    427098 8iz9:A (2.95) BS01 XPG 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    427099 8iza:A (3.48) BS01 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    427100 8iza:A (3.48) BS02 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    427101 8izb:R (3.06) BS01 UBL ? GO:0004930 ... Q9BXC1 38048360
    427102 8izb:R (3.06) BS02 SER ? GO:0004930 ... Q9BXC1 38048360
    427103 8izb:R (3.06) BS03 CLR ? GO:0004930 ... Q9BXC1 38048360
    427104 8izb:R (3.06) BS04 CLR ? GO:0004930 ... Q9BXC1 38048360
    427105 8izc:A (1.45) BS01 S93 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 N/A
    427106 8izc:B (1.45) BS01 S93 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 N/A
    427107 8izd:A (3.09) BS01 9NY 2.3.1.297 GO:0005515 ... P28496 37953642
    427108 8izd:C (3.09) BS01 9NY 2.3.1.297 GO:0005515 ... P28496 37953642
    427109 8ize:A (1.4) BS01 S9R ? N/A O00481 37674084
    427110 8izg:A (1.6) BS01 SE6 ? N/A O00481 37674084
    427111 8izh:A (2.3) BS02 AGU N/A N/A P00760 39216203
    427112 8izh:A (2.3) BS03 AGU N/A N/A P00760 39216203
    427113 8izh:A (2.3) BS04 AGU N/A N/A P00760 39216203
    427114 8izi:A (2.1) BS02 SD9 N/A N/A P00760 39216203
    427115 8izj:A (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    427116 8izj:B (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    427117 8izk:A (2.0) BS02 GAI N/A N/A P00760 39216203
    427118 8izy:A (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    427119 8izy:A (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    427120 8izy:A (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    427121 8izy:B (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    427122 8izy:B (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    427123 8izy:B (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    427124 8izy:C (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    427125 8izy:C (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    427126 8izy:C (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    427127 8izy:D (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    427128 8izy:D (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    427129 8izy:D (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    427130 8j00:A (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    427131 8j00:A (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    427132 8j00:A (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    427133 8j00:B (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    427134 8j00:B (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    427135 8j00:B (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    427136 8j00:C (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    427137 8j00:C (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    427138 8j00:C (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    427139 8j00:D (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    427140 8j00:D (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    427141 8j00:D (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    427142 8j01:A (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    427143 8j01:A (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    427144 8j01:A (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    427145 8j01:A (3.1) BS04 PIO ? GO:0005216 ... O43526 37857637
    427146 8j01:B (3.1) BS01 PIO ? GO:0005216 ... O43526 37857637
    427147 8j01:B (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    427148 8j01:B (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    427149 8j01:D (3.1) BS01 PIO ? GO:0005216 ... O43526 37857637
    427150 8j01:D (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    427151 8j01:D (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    427152 8j01:G (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    427153 8j01:G (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    427154 8j01:G (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    427155 8j01:G (3.1) BS04 PIO ? GO:0005216 ... O43526 37857637
    427156 8j02:A (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    427157 8j02:A (3.5) BS02 P0T ? GO:0005216 ... O43526 37857637
    427158 8j02:A (3.5) BS03 PIO ? GO:0005216 ... O43526 37857637
    427159 8j02:B (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    427160 8j02:B (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    427161 8j02:B (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    427162 8j02:D (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    427163 8j02:D (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    427164 8j02:D (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    427165 8j02:G (3.5) BS01 P0T ? GO:0005216 ... O43526 37857637
    427166 8j02:G (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    427167 8j02:G (3.5) BS03 PIO ? GO:0005216 ... O43526 37857637
    427168 8j03:A (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    427169 8j03:A (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    427170 8j03:D (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    427171 8j03:D (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    427172 8j03:G (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    427173 8j03:G (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    427174 8j03:I (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    427175 8j03:I (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    427176 8j04:A (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    427177 8j04:A (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    427178 8j04:A (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    427179 8j04:B (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    427180 8j04:B (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    427181 8j04:B (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    427182 8j04:D (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    427183 8j04:D (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    427184 8j04:D (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    427185 8j04:G (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    427186 8j04:G (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    427187 8j04:G (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    427188 8j07:AB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427189 8j07:AC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427190 8j07:AD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427191 8j07:AE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427192 8j07:AF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427193 8j07:AG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427194 8j07:AH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427195 8j07:AI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427196 8j07:AJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427197 8j07:AK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427198 8j07:AL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427199 8j07:AM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427200 8j07:AN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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