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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    426801 8iyj:FD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426802 8iyj:FE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426803 8iyj:FF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426804 8iyj:FG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426805 8iyj:FH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426806 8iyj:FI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426807 8iyj:FJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426808 8iyj:FK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426809 8iyj:FL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426810 8iyj:FM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426811 8iyj:FN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426812 8iyj:FO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426813 8iyj:GA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426814 8iyj:GB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426815 8iyj:GC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426816 8iyj:GD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426817 8iyj:GE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426818 8iyj:GF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426819 8iyj:GG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426820 8iyj:GH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426821 8iyj:GI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426822 8iyj:GJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426823 8iyj:GK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426824 8iyj:GL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426825 8iyj:GM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426826 8iyj:GN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426827 8iyj:GO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426828 8iyj:HA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426829 8iyj:HB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426830 8iyj:HC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426831 8iyj:HD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426832 8iyj:HE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426833 8iyj:HF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426834 8iyj:HG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426835 8iyj:HH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426836 8iyj:HI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426837 8iyj:HJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426838 8iyj:HK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426839 8iyj:HL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426840 8iyj:HM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426841 8iyj:HN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426842 8iyj:HO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426843 8iyj:HP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426844 8iyj:IA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426845 8iyj:IB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426846 8iyj:IC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426847 8iyj:ID (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426848 8iyj:IE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426849 8iyj:IF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426850 8iyj:IG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426851 8iyj:IH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426852 8iyj:II (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426853 8iyj:IJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426854 8iyj:IK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426855 8iyj:IL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426856 8iyj:IM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426857 8iyj:IN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426858 8iyj:IO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426859 8iyj:IP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426860 8iyj:JB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426861 8iyj:JC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426862 8iyj:JD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426863 8iyj:JE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426864 8iyj:JF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426865 8iyj:JG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426866 8iyj:JH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426867 8iyj:JI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426868 8iyj:JJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426869 8iyj:JK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426870 8iyj:JL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426871 8iyj:JM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426872 8iyj:JN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426873 8iyj:JO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426874 8iyj:JP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426875 8iyj:JQ (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426876 8iyj:KA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426877 8iyj:KB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426878 8iyj:KB (3.5) BS02 GTP ? GO:0003725 ... P68372 37295417
    426879 8iyj:KC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426880 8iyj:KD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426881 8iyj:KE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426882 8iyj:KF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426883 8iyj:KG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426884 8iyj:KH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426885 8iyj:KI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426886 8iyj:KJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426887 8iyj:KJ (3.5) BS02 GTP ? GO:0003725 ... P68372 37295417
    426888 8iyj:KK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426889 8iyj:KL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426890 8iyj:KM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426891 8iyj:KN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426892 8iyj:KO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426893 8iyj:KP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426894 8iyj:LA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426895 8iyj:LB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426896 8iyj:LC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426897 8iyj:LD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426898 8iyj:LE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426899 8iyj:LF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426900 8iyj:LG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426901 8iyj:LH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426902 8iyj:LI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426903 8iyj:LJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426904 8iyj:LK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426905 8iyj:LL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426906 8iyj:LM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426907 8iyj:LN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426908 8iyj:LO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426909 8iyj:LP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426910 8iyj:MA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426911 8iyj:MB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426912 8iyj:MC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426913 8iyj:MD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426914 8iyj:ME (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426915 8iyj:MF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426916 8iyj:MG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426917 8iyj:MH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426918 8iyj:MI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426919 8iyj:MJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426920 8iyj:MK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426921 8iyj:ML (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426922 8iyj:MM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426923 8iyj:MN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426924 8iyj:MO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426925 8iyj:MP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426926 8iyj:NA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426927 8iyj:NB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426928 8iyj:NC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426929 8iyj:ND (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426930 8iyj:NE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426931 8iyj:NF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426932 8iyj:NG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426933 8iyj:NH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426934 8iyj:NI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426935 8iyj:NJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426936 8iyj:NK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426937 8iyj:NL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426938 8iyj:NM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426939 8iyj:NN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426940 8iyj:NO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426941 8iyj:NP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426942 8iyj:OA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426943 8iyj:OB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426944 8iyj:OC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426945 8iyj:OD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426946 8iyj:OE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426947 8iyj:OF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426948 8iyj:OG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426949 8iyj:OH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426950 8iyj:OI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426951 8iyj:OJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426952 8iyj:OK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426953 8iyj:OL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426954 8iyj:OM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426955 8iyj:ON (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426956 8iyj:OO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426957 8iyj:OP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426958 8iyj:PB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426959 8iyj:PC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426960 8iyj:PD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426961 8iyj:PE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426962 8iyj:PF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426963 8iyj:PG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426964 8iyj:PH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426965 8iyj:PI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426966 8iyj:PJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426967 8iyj:PK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426968 8iyj:PL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426969 8iyj:PM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426970 8iyj:PN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426971 8iyj:PO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426972 8iyj:PP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426973 8iyj:QB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426974 8iyj:QC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426975 8iyj:QD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426976 8iyj:QE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426977 8iyj:QF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426978 8iyj:QG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426979 8iyj:QH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426980 8iyj:QI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426981 8iyj:QJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426982 8iyj:QK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426983 8iyj:QL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426984 8iyj:QM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426985 8iyj:QN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426986 8iyj:QO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426987 8iyj:QP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426988 8iyj:RC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426989 8iyj:RD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426990 8iyj:RE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426991 8iyj:RF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426992 8iyj:RG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426993 8iyj:RH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426994 8iyj:RI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426995 8iyj:RJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426996 8iyj:RK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426997 8iyj:RL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426998 8iyj:RM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426999 8iyj:RN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    427000 8iyj:RO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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