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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27201 1rwt:B (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27202 1rwt:B (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    27203 1rwt:B (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    27204 1rwt:B (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27205 1rwt:B (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27206 1rwt:B (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27207 1rwt:B (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    27208 1rwt:B (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    27209 1rwt:B (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27210 1rwt:B (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27211 1rwt:B (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27212 1rwt:B (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    27213 1rwt:B (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    27214 1rwt:B (2.72) BS17 CHL ? GO:0009765 ... P12333 15029188
    27215 1rwt:C (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27216 1rwt:C (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    27217 1rwt:C (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    27218 1rwt:C (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27219 1rwt:C (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    27220 1rwt:C (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    27221 1rwt:C (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27222 1rwt:C (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27223 1rwt:C (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27224 1rwt:C (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    27225 1rwt:C (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    27226 1rwt:C (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27227 1rwt:C (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27228 1rwt:C (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27229 1rwt:C (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    27230 1rwt:C (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    27231 1rwt:D (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27232 1rwt:D (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    27233 1rwt:D (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    27234 1rwt:D (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27235 1rwt:D (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    27236 1rwt:D (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    27237 1rwt:D (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27238 1rwt:D (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27239 1rwt:D (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27240 1rwt:D (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    27241 1rwt:D (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    27242 1rwt:D (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27243 1rwt:D (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27244 1rwt:D (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27245 1rwt:D (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    27246 1rwt:D (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    27247 1rwt:E (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27248 1rwt:E (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    27249 1rwt:E (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    27250 1rwt:E (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27251 1rwt:E (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    27252 1rwt:E (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    27253 1rwt:E (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27254 1rwt:E (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27255 1rwt:E (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27256 1rwt:E (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    27257 1rwt:E (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    27258 1rwt:E (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27259 1rwt:E (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27260 1rwt:E (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27261 1rwt:E (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    27262 1rwt:E (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    27263 1rwt:F (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27264 1rwt:F (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    27265 1rwt:F (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    27266 1rwt:F (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27267 1rwt:F (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    27268 1rwt:F (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    27269 1rwt:F (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27270 1rwt:F (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27271 1rwt:F (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27272 1rwt:F (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    27273 1rwt:F (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    27274 1rwt:F (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27275 1rwt:F (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27276 1rwt:F (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27277 1rwt:F (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    27278 1rwt:F (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    27279 1rwt:G (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27280 1rwt:G (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    27281 1rwt:G (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    27282 1rwt:G (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27283 1rwt:G (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    27284 1rwt:G (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    27285 1rwt:G (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27286 1rwt:G (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27287 1rwt:G (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27288 1rwt:G (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    27289 1rwt:G (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    27290 1rwt:G (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27291 1rwt:G (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27292 1rwt:G (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27293 1rwt:G (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    27294 1rwt:G (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    27295 1rwt:H (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27296 1rwt:H (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    27297 1rwt:H (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    27298 1rwt:H (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27299 1rwt:H (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    27300 1rwt:H (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    27301 1rwt:H (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27302 1rwt:H (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27303 1rwt:H (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27304 1rwt:H (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    27305 1rwt:H (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    27306 1rwt:H (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27307 1rwt:H (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27308 1rwt:H (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27309 1rwt:H (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    27310 1rwt:H (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    27311 1rwt:I (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27312 1rwt:I (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    27313 1rwt:I (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    27314 1rwt:I (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27315 1rwt:I (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    27316 1rwt:I (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    27317 1rwt:I (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27318 1rwt:I (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27319 1rwt:I (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27320 1rwt:I (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    27321 1rwt:I (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    27322 1rwt:I (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27323 1rwt:I (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27324 1rwt:I (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27325 1rwt:I (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    27326 1rwt:I (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    27327 1rwt:J (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    27328 1rwt:J (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    27329 1rwt:J (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    27330 1rwt:J (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    27331 1rwt:J (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    27332 1rwt:J (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    27333 1rwt:J (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27334 1rwt:J (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    27335 1rwt:J (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    27336 1rwt:J (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    27337 1rwt:J (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    27338 1rwt:J (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    27339 1rwt:J (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    27340 1rwt:J (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    27341 1rwt:J (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    27342 1rwt:J (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    27343 1rwv:A (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    27344 1rwv:B (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    27345 1rww:A (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    27346 1rww:B (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    27347 1rwx:A (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    27348 1rwx:B (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    27349 1rx0:A (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27350 1rx0:A (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27351 1rx0:B (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27352 1rx0:B (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27353 1rx0:C (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27354 1rx0:C (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27355 1rx0:C (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27356 1rx0:D (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27357 1rx0:D (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27358 1rx0:D (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    27359 1rx1:A (2.0) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    27360 1rx2:A (1.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27361 1rx3:A (2.2) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    27362 1rx3:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27363 1rx4:A (2.2) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27364 1rx4:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27365 1rx5:A (2.3) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27366 1rx6:A (2.0) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27367 1rx6:A (2.0) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27368 1rx8:A (2.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    27369 1rx9:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    27370 1rxc:A (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27371 1rxc:B (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27372 1rxc:B (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27373 1rxc:C (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27374 1rxc:C (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27375 1rxc:C (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27376 1rxc:D (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27377 1rxc:D (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27378 1rxc:D (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27379 1rxc:E (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27380 1rxc:E (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27381 1rxc:E (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27382 1rxc:F (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27383 1rxc:F (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27384 1rxc:F (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27385 1rxc:I (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27386 1rxc:I (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27387 1rxc:J (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27388 1rxc:J (2.35) BS03 PO4 2.4.2.3 GO:0003824 ... P12758 15003451
    27389 1rxc:J (2.35) BS04 5UD 2.4.2.3 GO:0003824 ... P12758 15003451
    27390 1rxc:K (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27391 1rxc:K (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27392 1rxc:K (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27393 1rxc:L (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27394 1rxc:L (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    27395 1rxc:L (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    27396 1rxe:A (1.7) BS01 MNB 1.20.4.4 GO:0004725 ... P0A006 15159594
    27397 1rxg:A (1.5) BS02 AKG 1.14.20.1 GO:0005506 ... P18548 9723623
    27398 1rxh:A (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    27399 1rxh:B (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    27400 1rxj:A (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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