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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 39065 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    31101 7rg6:A
    (2.1)
    BS01 >7rg6:C
    RKRRRH
    ? GO:0005737 ... P52293 35338144
    31102 7rg6:A
    (2.1)
    BS02 >7rg6:D
    TRKRRR
    ? GO:0005737 ... P52293 35338144
    31103 7rjk:A
    (1.85)
    BS01 >7rjk:C (identical to 7rjk:D)
    VIGKGGKNI
    ? N/A Q15059 N/A
    31104 7rjk:B
    (1.85)
    BS01 >7rjk:D (identical to 7rjk:C)
    VIGKGGKNI
    ? N/A Q15059 N/A
    31105 7rjl:A
    (1.5)
    BS01 >7rjl:C (identical to 7rjp:B)
    RKGVKS
    ? N/A Q15059 N/A
    31106 7rjm:A
    (2.1)
    BS01 >7rjm:C
    AKGLLL
    ? N/A Q15059 N/A
    31107 7rjn:A
    (1.95)
    BS01 >7rjn:C (identical to 7rjn:D)
    TGKF
    ? N/A Q15059 N/A
    31108 7rjn:B
    (1.95)
    BS01 >7rjn:D (identical to 7rjn:C)
    TGKF
    ? N/A Q15059 N/A
    31109 7rjo:A
    (1.38)
    BS01 >7rjo:B
    VIGKGGKNIK
    ? N/A O60885 N/A
    31110 7rjp:A
    (1.25)
    BS01 >7rjp:B (identical to 7rjl:C)
    RKGVKS
    ? N/A O60885 N/A
    31111 7rjq:A
    (1.72)
    BS01 >7rjq:B
    AKGLLLKG
    ? N/A O60885 N/A
    31112 7rjr:A
    (1.45)
    BS01 >7rjr:B
    TGKFL
    ? N/A O60885 N/A
    31113 7rk3:A
    (2.05)
    BS01 >7rk3:B (identical to 6pav:C)
    GKVLSKIF
    2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 N/A
    31114 7rk7:A
    (2.54)
    BS01 >7rk7:C
    YMDGTMSQV
    ? N/A P04439 N/A
    31115 7rk7:D
    (2.54)
    BS01 >7rk7:C
    YMDGTMSQV
    N/A N/A N/A N/A
    31116 7rk7:E
    (2.54)
    BS01 >7rk7:C
    YMDGTMSQV
    N/A N/A N/A N/A
    31117 7rke:A
    (1.55)
    BS01 >7rke:C (identical to 5dvv:D, 4ppp:C, 7sfo:C, 5tlp:D)
    KILHRLL
    ? N/A P03372 35859859
    31118 7rke:B
    (1.55)
    BS01 >7rke:D (identical to 2b23:C, 6d0f:D, 5di7:C, 5di7:D, 5did:C, 5did:D, 5die:C, 5die:D, 5dig:C, 5dig:D, 5dkb:C, 5dkb:D, 5dke:C, 5dke:D, 5dkg:C, 5dkg:D, 5dl4:C, 5dl4:D, 5dlr:C, 5dlr:D, 5dmc:C, 5dmf:D, 5drj:C, 5drj:D, 5drm:C, 5due:C, 5dug:C, 5duh:C, 5dwi:C, 5dwj:C, 5dxk:C, 5dxp:C, 5dxq:C, 5dy8:C, 5dyb:C, 5dz0:C, 5dz1:C, 5dzh:C, 5dzi:D, 5e0w:D, 5e14:D, 5e19:D, 5e1c:D, 3e94:B, 5egv:C, 5ehj:D, 5ei1:C, 2fai:C, 2fai:D, 2g5o:C, 3hlv:D, 3hm1:C, 4iqr:J, 4iu7:C, 4iv2:C, 4iv4:C, 4ivw:C, 4ivy:C, 4iw6:C, 4iw8:C, 4iw8:D, 4iwc:C, 4iwf:C, 5kcd:C, 5kce:C, 5kcf:D, 5kct:C, 5kcu:C, 5kcw:C, 5kd9:C, 5kra:C, 5kra:G, 5kra:H, 5krc:C, 5krc:D, 5krf:C, 5krf:D, 5krh:C, 5krh:D, 5kri:C, 5krj:C, 5krj:D, 5krk:C, 5krl:C, 3kwy:B, 1l2i:C, 6lb5:B, 6lb6:B, 5lyq:B, 7nfb:C, 4nie:D, 7nke:B, 7nke:D, 4nqa:C, 4oc7:B, 3ozj:B, 2p1t:B, 2p1u:B, 2p1v:B, 3pcu:B, 2q6j:D, 2qa8:C, 2qh6:C, 2qh6:D, 2qr9:C, 2qse:C, 2qxm:D, 3r5m:B, 3r5m:D, 7sfo:D, 5t1z:C, 7t2x:D, 5tld:C, 5tlf:C, 5tlp:C, 5tlt:C, 5tlu:C, 5tlx:C, 5tly:D, 5tm5:D, 5tm6:C, 5tm7:C, 5tm8:D, 5tmo:C, 5tms:C, 5tmu:D, 5tmw:D, 5tmz:C, 5tn5:D, 5tn6:C, 5tn6:D, 5uan:C, 1uhl:D, 7uw2:B, 7uw4:B, 1zky:C, 4zn9:C, 4zns:C, 4znv:D, 4znw:C, 2zy0:B)
    HKILHRLLQD
    ? N/A P03372 35859859
    31119 7rle:A
    (2.5)
    BS01 >7rle:B
    VPDAASKHKQLSELLRGG
    ? GO:0003677 ... P37231 36469765
    31120 7rle:C
    (2.5)
    BS01 >7rle:D
    DAASKHKQLSELLR
    ? GO:0003677 ... P37231 36469765
    31121 7rlv:A
    (2.2)
    BS01 >7rlv:P (identical to 7rlv:R)
    DRADGQPAGDRA
    N/A N/A N/A 35023832
    31122 7rlv:B
    (2.2)
    BS01 >7rlv:P (identical to 7rlv:R)
    DRADGQPAGDRA
    N/A N/A N/A 35023832
    31123 7rlv:C
    (2.2)
    BS01 >7rlv:R (identical to 7rlv:P)
    DRADGQPAGDRA
    N/A N/A N/A 35023832
    31124 7rlv:D
    (2.2)
    BS01 >7rlv:R (identical to 7rlv:P)
    DRADGQPAGDRA
    N/A N/A N/A 35023832
    31125 7rlv:E
    (2.2)
    BS01 >7rlv:Q
    DRADGQPAGDRADG
    N/A N/A N/A 35023832
    31126 7rlv:F
    (2.2)
    BS01 >7rlv:Q
    DRADGQPAGDRADG
    N/A N/A N/A 35023832
    31127 7rlw:A
    (2.54)
    BS01 >7rlw:P
    GDRAAGQPAGDR
    N/A N/A N/A 35023832
    31128 7rlw:A
    (2.54)
    BS02 >7rlw:R
    RAAGQPAGDR
    N/A N/A N/A 35023832
    31129 7rlw:B
    (2.54)
    BS01 >7rlw:P
    GDRAAGQPAGDR
    N/A N/A N/A 35023832
    31130 7rlw:C
    (2.54)
    BS01 >7rlw:R
    RAAGQPAGDR
    N/A N/A N/A 35023832
    31131 7rlw:D
    (2.54)
    BS01 >7rlw:P
    GDRAAGQPAGDR
    N/A N/A N/A 35023832
    31132 7rlw:D
    (2.54)
    BS02 >7rlw:R
    RAAGQPAGDR
    N/A N/A N/A 35023832
    31133 7rlx:A
    (1.97)
    BS01 >7rlx:P
    GDRADGQPAGD
    N/A N/A N/A 35023832
    31134 7rlx:B
    (1.97)
    BS01 >7rlx:P
    GDRADGQPAGD
    N/A N/A N/A 35023832
    31135 7rly:A
    (2.67)
    BS01 >7rly:Q
    DRAAGQPAGDRAD
    N/A N/A N/A 35023832
    31136 7rly:B
    (2.67)
    BS01 >7rly:Q
    DRAAGQPAGDRAD
    N/A N/A N/A 35023832
    31137 7rly:C
    (2.67)
    BS01 >7rly:P
    DRAAGQPAGDRADGQ
    N/A N/A N/A 35023832
    31138 7rly:D
    (2.67)
    BS01 >7rly:P
    DRAAGQPAGDRADGQ
    N/A N/A N/A 35023832
    31139 7rly:E
    (2.67)
    BS01 >7rly:R
    DRAAGQPAGDRADGQP
    N/A N/A N/A 35023832
    31140 7rly:F
    (2.67)
    BS01 >7rly:R
    DRAAGQPAGDRADGQP
    N/A N/A N/A 35023832
    31141 7rlz:A
    (2.27)
    BS01 >7rlz:P (identical to 7rlz:R)
    DRAAGQPAGN
    N/A N/A N/A 35023832
    31142 7rlz:B
    (2.27)
    BS01 >7rlz:P (identical to 7rlz:R)
    DRAAGQPAGN
    N/A N/A N/A 35023832
    31143 7rlz:C
    (2.27)
    BS01 >7rlz:R (identical to 7rlz:P)
    DRAAGQPAGN
    N/A N/A N/A 35023832
    31144 7rlz:D
    (2.27)
    BS01 >7rlz:R (identical to 7rlz:P)
    DRAAGQPAGN
    N/A N/A N/A 35023832
    31145 7rm0:A
    (2.71)
    BS01 >7rm0:P (identical to 7rm0:S)
    GAGNQPGAN
    N/A N/A N/A 35023832
    31146 7rm0:B
    (2.71)
    BS01 >7rm0:P (identical to 7rm0:S)
    GAGNQPGAN
    N/A N/A N/A 35023832
    31147 7rm0:C
    (2.71)
    BS01 >7rm0:Q
    NGAGNQPGAN
    N/A N/A N/A 35023832
    31148 7rm0:D
    (2.71)
    BS01 >7rm0:Q
    NGAGNQPGAN
    N/A N/A N/A 35023832
    31149 7rm0:E
    (2.71)
    BS01 >7rm0:R
    AGNQPGAN
    N/A N/A N/A 35023832
    31150 7rm0:F
    (2.71)
    BS01 >7rm0:R
    AGNQPGAN
    N/A N/A N/A 35023832
    31151 7rm0:G
    (2.71)
    BS01 >7rm0:S (identical to 7rm0:P)
    GAGNQPGAN
    N/A N/A N/A 35023832
    31152 7rm0:H
    (2.71)
    BS01 >7rm0:S (identical to 7rm0:P)
    GAGNQPGAN
    N/A N/A N/A 35023832
    31153 7rm1:A
    (3.19)
    BS01 >7rm1:P
    GAGNQPGANGAGNQPGAN
    N/A N/A N/A 35023832
    31154 7rm1:B
    (3.19)
    BS01 >7rm1:P
    GAGNQPGANGAGNQPGAN
    N/A N/A N/A 35023832
    31155 7rm1:C
    (3.19)
    BS01 >7rm1:P
    GAGNQPGANGAGNQPGAN
    N/A N/A N/A 35023832
    31156 7rm1:D
    (3.19)
    BS01 >7rm1:P
    GAGNQPGANGAGNQPGAN
    N/A N/A N/A 35023832
    31157 7rm3:A
    (2.68)
    BS01 >7rm3:Q
    GAGNQPGANG
    N/A N/A N/A 35023832
    31158 7rm3:C
    (2.68)
    BS01 >7rm3:P
    NGAGNQPGANGA
    N/A N/A N/A 35023832
    31159 7rm4:A
    (3.33)
    BS01 >7rm4:C (identical to 7rm4:H, 7rm4:M, 7rm4:R, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    ? N/A P04439 35124005
    31160 7rm4:E
    (3.33)
    BS01 >7rm4:C (identical to 7rm4:H, 7rm4:M, 7rm4:R, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    N/A N/A N/A 35124005
    31161 7rm4:F
    (3.33)
    BS01 >7rm4:H (identical to 7rm4:C, 7rm4:M, 7rm4:R, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    ? N/A P04439 35124005
    31162 7rm4:J
    (3.33)
    BS01 >7rm4:H (identical to 7rm4:C, 7rm4:M, 7rm4:R, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    N/A N/A N/A 35124005
    31163 7rm4:K
    (3.33)
    BS01 >7rm4:M (identical to 7rm4:C, 7rm4:H, 7rm4:R, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    ? N/A P04439 35124005
    31164 7rm4:O
    (3.33)
    BS01 >7rm4:M (identical to 7rm4:C, 7rm4:H, 7rm4:R, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    N/A N/A N/A 35124005
    31165 7rm4:P
    (3.33)
    BS01 >7rm4:R (identical to 7rm4:C, 7rm4:H, 7rm4:M, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    ? N/A P04439 35124005
    31166 7rm4:T
    (3.33)
    BS01 >7rm4:R (identical to 7rm4:C, 7rm4:H, 7rm4:M, 6vqo:P, 6vqo:Q, 6vr5:P, 6vr5:Q, 6vrm:P, 6vrn:P, 6w51:C, 6w51:F, 6w51:I, 6w51:L)
    HMTEVVRHC
    N/A N/A N/A 35124005
    31167 7rma:A
    (2.0)
    BS01 >7rma:C
    GQQEEEDLQRILQLSLTEH
    ? N/A P0CG47 35385646
    31168 7rmg:R
    (3.0)
    BS01 >7rmg:S (identical to 4hom:B, 2ks9:B, 2ksa:B, 2ksb:B, 7p00:P, 7rmh:S, 8u26:S)
    RPKPQQFFGLM
    ? GO:0002118 ... P25103 34711980
    31169 7rmh:R
    (3.1)
    BS01 >7rmh:S (identical to 4hom:B, 2ks9:B, 2ksa:B, 2ksb:B, 7p00:P, 7rmg:S, 8u26:S)
    RPKPQQFFGLM
    ? GO:0002118 ... P25103 34711980
    31170 7rmi:R
    (3.2)
    BS01 >7rmi:S
    QFFGLM
    ? GO:0002118 ... P25103 34711980
    31171 7rn7:A
    (2.4)
    BS01 >7rn7:F (identical to 7rn7:G, 7rnf:F, 7rnf:G)
    VDKVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31172 7rn7:B
    (2.4)
    BS01 >7rn7:F (identical to 7rn7:G, 7rnf:F, 7rnf:G)
    VDKVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31173 7rn7:C
    (2.4)
    BS01 >7rn7:G (identical to 7rn7:F, 7rnf:F, 7rnf:G)
    VDKVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31174 7rn7:D
    (2.4)
    BS01 >7rn7:G (identical to 7rn7:F, 7rnf:F, 7rnf:G)
    VDKVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31175 7rn8:A
    (1.88)
    BS01 >7rn8:F (identical to 7rn8:G, 7rnd:F, 7rnd:G)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31176 7rn8:B
    (1.88)
    BS01 >7rn8:F (identical to 7rn8:G, 7rnd:F, 7rnd:G)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31177 7rn8:C
    (1.88)
    BS01 >7rn8:G (identical to 7rn8:F, 7rnd:F, 7rnd:G)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31178 7rn8:D
    (1.88)
    BS01 >7rn8:G (identical to 7rn8:F, 7rnd:F, 7rnd:G)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31179 7rn9:A
    (1.67)
    BS01 >7rn9:F (identical to 7rn9:G)
    VDFVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31180 7rn9:B
    (1.67)
    BS01 >7rn9:F (identical to 7rn9:G)
    VDFVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31181 7rn9:C
    (1.67)
    BS01 >7rn9:G (identical to 7rn9:F)
    VDFVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31182 7rn9:D
    (1.67)
    BS01 >7rn9:G (identical to 7rn9:F)
    VDFVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31183 7rna:A
    (1.9)
    BS01 >7rna:F (identical to 7rna:G, 7usp:F, 7usp:G)
    ITVPD
    3.4.22.56 GO:0004197 ... P42574 35642311
    31184 7rna:B
    (1.9)
    BS01 >7rna:F (identical to 7rna:G, 7usp:F, 7usp:G)
    ITVPD
    3.4.22.56 GO:0004197 ... P42574 35642311
    31185 7rna:C
    (1.9)
    BS01 >7rna:G (identical to 7rna:F, 7usp:F, 7usp:G)
    ITVPD
    3.4.22.56 GO:0004197 ... P42574 35642311
    31186 7rna:D
    (1.9)
    BS01 >7rna:G (identical to 7rna:F, 7usp:F, 7usp:G)
    ITVPD
    3.4.22.56 GO:0004197 ... P42574 35642311
    31187 7rnb:A
    (1.75)
    BS01 >7rnb:F (identical to 7rnb:G)
    VDRVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31188 7rnb:B
    (1.75)
    BS01 >7rnb:F (identical to 7rnb:G)
    VDRVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31189 7rnb:C
    (1.75)
    BS01 >7rnb:G (identical to 7rnb:F)
    VDRVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31190 7rnb:D
    (1.75)
    BS01 >7rnb:G (identical to 7rnb:F)
    VDRVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31191 7rnc:A
    (1.93)
    BS01 >7rnc:F (identical to 7rnc:G)
    VDVVD
    3.4.22.56 GO:0004197 ... P42574 N/A
    31192 7rnc:B
    (1.93)
    BS01 >7rnc:F (identical to 7rnc:G)
    VDVVD
    3.4.22.56 GO:0004197 ... P42574 N/A
    31193 7rnc:C
    (1.93)
    BS01 >7rnc:G (identical to 7rnc:F)
    VDVVD
    3.4.22.56 GO:0004197 ... P42574 N/A
    31194 7rnc:D
    (1.93)
    BS01 >7rnc:G (identical to 7rnc:F)
    VDVVD
    3.4.22.56 GO:0004197 ... P42574 N/A
    31195 7rnd:A
    (2.15)
    BS01 >7rnd:F (identical to 7rn8:F, 7rn8:G, 7rnd:G)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31196 7rnd:B
    (2.15)
    BS01 >7rnd:F (identical to 7rn8:F, 7rn8:G, 7rnd:G)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31197 7rnd:C
    (2.15)
    BS01 >7rnd:G (identical to 7rn8:F, 7rn8:G, 7rnd:F)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31198 7rnd:D
    (2.15)
    BS01 >7rnd:G (identical to 7rn8:F, 7rn8:G, 7rnd:F)
    VDPVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31199 7rne:A
    (2.73)
    BS01 >7rne:F (identical to 7rne:G)
    PVD
    3.4.22.56 GO:0004197 ... P42574 35059567
    31200 7rne:B
    (2.73)
    BS01 >7rne:F (identical to 7rne:G)
    PVD
    3.4.22.56 GO:0004197 ... P42574 35059567

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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