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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    196201 9ayf:Q (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    196202 9ayf:Q (3.6) BS04 CA ? GO:0004930 ... P41180 38632411
    196203 9ayf:R (3.6) BS02 CA ? GO:0004930 ... P41180 38632411
    196204 9ayf:R (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    196205 9ayg:A (3.0) BS01 CA ? GO:0005216 ... O95180 38605177
    196206 9ayh:A (3.1) BS02 CA ? GO:0005216 ... O95180 38605177
    196207 9ayj:A (3.2) BS02 CA ? GO:0005216 ... O95180 38605177
    196208 9ayk:A (3.0) BS02 CA ? GO:0005216 ... O95180 38605177
    196209 9ayl:A (2.8) BS02 CA ? GO:0005216 ... O95180 38605177
    196210 9azq:C (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    196211 9azq:E (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    196212 9azq:I (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    196213 9b00:10 (2.8) BS03 MG N/A N/A P60493 39019034
    196214 9b00:10 (2.8) BS04 MG N/A N/A P60493 39019034
    196215 9b00:11 (2.8) BS03 MG N/A N/A P60494 39019034
    196216 9b00:11 (2.8) BS04 MG N/A N/A P60494 39019034
    196217 9b00:13 (2.8) BS03 MG N/A N/A Q5SHQ6 39019034
    196218 9b00:13 (2.8) BS04 MG N/A N/A Q5SHQ6 39019034
    196219 9b00:14 (2.8) BS02 ZN N/A N/A Q5SJE1 39019034
    196220 9b00:15 (2.8) BS02 MG N/A N/A P80339 39019034
    196221 9b00:15 (2.8) BS03 ZN N/A N/A P80339 39019034
    196222 9b00:16 (2.8) BS02 MG N/A N/A P35871 39019034
    196223 9b00:16 (2.8) BS03 ZN N/A N/A P35871 39019034
    196224 9b00:17 (2.8) BS02 MG N/A N/A P80340 39019034
    196225 9b00:17 (2.8) BS03 MG N/A N/A P80340 39019034
    196226 9b00:18 (2.8) BS02 MG N/A N/A Q5SKU1 39019034
    196227 9b00:18 (2.8) BS03 MG N/A N/A Q5SKU1 39019034
    196228 9b00:18 (2.8) BS04 MG N/A N/A Q5SKU1 39019034
    196229 9b00:19 (2.8) BS02 ZN N/A N/A Q5SHR2 39019034
    196230 9b00:1D (2.8) BS03 MG N/A N/A P60405 39019034
    196231 9b00:1D (2.8) BS04 MG N/A N/A P60405 39019034
    196232 9b00:1D (2.8) BS05 MG N/A N/A P60405 39019034
    196233 9b00:1D (2.8) BS06 MG N/A N/A P60405 39019034
    196234 9b00:1D (2.8) BS07 MG N/A N/A P60405 39019034
    196235 9b00:1D (2.8) BS08 MG N/A N/A P60405 39019034
    196236 9b00:1D (2.8) BS09 MG N/A N/A P60405 39019034
    196237 9b00:1D (2.8) BS10 MG N/A N/A P60405 39019034
    196238 9b00:1D (2.8) BS11 MG N/A N/A P60405 39019034
    196239 9b00:1D (2.8) BS12 MG N/A N/A P60405 39019034
    196240 9b00:1D (2.8) BS13 MG N/A N/A P60405 39019034
    196241 9b00:1E (2.8) BS02 MG N/A N/A Q5SHN8 39019034
    196242 9b00:1E (2.8) BS03 MG N/A N/A Q5SHN8 39019034
    196243 9b00:1E (2.8) BS04 MG N/A N/A Q5SHN8 39019034
    196244 9b00:1E (2.8) BS05 MG N/A N/A Q5SHN8 39019034
    196245 9b00:1F (2.8) BS02 MG N/A N/A Q5SHN9 39019034
    196246 9b00:1F (2.8) BS03 MG N/A N/A Q5SHN9 39019034
    196247 9b00:1F (2.8) BS04 MG N/A N/A Q5SHN9 39019034
    196248 9b00:1F (2.8) BS05 MG N/A N/A Q5SHN9 39019034
    196249 9b00:1F (2.8) BS06 MG N/A N/A Q5SHN9 39019034
    196250 9b00:1F (2.8) BS07 MG N/A N/A Q5SHN9 39019034
    196251 9b00:1F (2.8) BS08 MG N/A N/A Q5SHN9 39019034
    196252 9b00:1F (2.8) BS09 MG N/A N/A Q5SHN9 39019034
    196253 9b00:1F (2.8) BS10 MG N/A N/A Q5SHN9 39019034
    196254 9b00:1G (2.8) BS04 MG N/A N/A Q5SHQ0 39019034
    196255 9b00:1N (2.8) BS02 MG N/A N/A P60488 39019034
    196256 9b00:1N (2.8) BS03 MG N/A N/A P60488 39019034
    196257 9b00:1N (2.8) BS04 MG N/A N/A P60488 39019034
    196258 9b00:1P (2.8) BS02 MG N/A N/A Q5SHQ7 39019034
    196259 9b00:1P (2.8) BS03 MG N/A N/A Q5SHQ7 39019034
    196260 9b00:1P (2.8) BS04 MG N/A N/A Q5SHQ7 39019034
    196261 9b00:1P (2.8) BS05 MG N/A N/A Q5SHQ7 39019034
    196262 9b00:1P (2.8) BS06 MG N/A N/A Q5SHQ7 39019034
    196263 9b00:1Q (2.8) BS04 MG N/A N/A P60489 39019034
    196264 9b00:1Q (2.8) BS05 MG N/A N/A P60489 39019034
    196265 9b00:1Q (2.8) BS06 MG N/A N/A P60489 39019034
    196266 9b00:1R (2.8) BS02 MG N/A N/A Q9Z9H5 39019034
    196267 9b00:1R (2.8) BS03 MG N/A N/A Q9Z9H5 39019034
    196268 9b00:1S (2.8) BS03 MG N/A N/A Q5SHQ4 39019034
    196269 9b00:1S (2.8) BS04 MG N/A N/A Q5SHQ4 39019034
    196270 9b00:1U (2.8) BS02 MG N/A N/A P60491 39019034
    196271 9b00:1U (2.8) BS03 MG N/A N/A P60491 39019034
    196272 9b00:1U (2.8) BS04 MG N/A N/A P60491 39019034
    196273 9b00:1U (2.8) BS05 MG N/A N/A P60491 39019034
    196274 9b00:1U (2.8) BS06 MG N/A N/A P60491 39019034
    196275 9b00:1U (2.8) BS07 MG N/A N/A P60491 39019034
    196276 9b00:1V (2.8) BS02 MG N/A N/A P60492 39019034
    196277 9b00:1V (2.8) BS03 MG N/A N/A P60492 39019034
    196278 9b00:1V (2.8) BS04 MG N/A N/A P60492 39019034
    196279 9b00:1V (2.8) BS05 MG N/A N/A P60492 39019034
    196280 9b00:1V (2.8) BS06 MG N/A N/A P60492 39019034
    196281 9b00:1V (2.8) BS07 MG N/A N/A P60492 39019034
    196282 9b00:1W (2.8) BS02 MG N/A N/A Q5SHP3 39019034
    196283 9b00:1W (2.8) BS03 MG N/A N/A Q5SHP3 39019034
    196284 9b00:1W (2.8) BS04 MG N/A N/A Q5SHP3 39019034
    196285 9b00:1W (2.8) BS05 MG N/A N/A Q5SHP3 39019034
    196286 9b00:1X (2.8) BS02 MG N/A N/A Q5SHP0 39019034
    196287 9b00:1X (2.8) BS03 MG N/A N/A Q5SHP0 39019034
    196288 9b00:1X (2.8) BS04 MG N/A N/A Q5SHP0 39019034
    196289 9b00:1X (2.8) BS05 MG N/A N/A Q5SHP0 39019034
    196290 9b00:1X (2.8) BS06 MG N/A N/A Q5SHP0 39019034
    196291 9b00:1Y (2.8) BS02 MG N/A N/A Q5SHP9 39019034
    196292 9b00:1Y (2.8) BS03 ZN N/A N/A Q5SHP9 39019034
    196293 9b00:1Z (2.8) BS03 MG N/A N/A Q5SHZ1 39019034
    196294 9b00:1b (2.8) BS02 MG N/A N/A P80371 39019034
    196295 9b00:1k (2.8) BS02 MG N/A N/A P80376 39019034
    196296 9b00:1m (2.8) BS05 MG N/A N/A P80377 39019034
    196297 9b00:1n (2.8) BS02 MG N/A N/A P0DOY6 39019034
    196298 9b00:1n (2.8) BS03 ZN N/A N/A P0DOY6 39019034
    196299 9b00:1t (2.8) BS02 MG N/A N/A P80380 39019034
    196300 9b00:21 (2.8) BS03 MG N/A N/A P60494 39019034
    196301 9b00:23 (2.8) BS03 MG N/A N/A Q5SHQ6 39019034
    196302 9b00:24 (2.8) BS02 ZN N/A N/A Q5SJE1 39019034
    196303 9b00:25 (2.8) BS02 ZN N/A N/A P80339 39019034
    196304 9b00:26 (2.8) BS02 ZN N/A N/A P35871 39019034
    196305 9b00:27 (2.8) BS02 MG N/A N/A P80340 39019034
    196306 9b00:28 (2.8) BS02 MG N/A N/A Q5SKU1 39019034
    196307 9b00:29 (2.8) BS02 ZN N/A N/A Q5SHR2 39019034
    196308 9b00:2D (2.8) BS03 MG N/A N/A P60405 39019034
    196309 9b00:2D (2.8) BS04 MG N/A N/A P60405 39019034
    196310 9b00:2D (2.8) BS05 MG N/A N/A P60405 39019034
    196311 9b00:2D (2.8) BS06 MG N/A N/A P60405 39019034
    196312 9b00:2E (2.8) BS02 MG N/A N/A Q5SHN8 39019034
    196313 9b00:2E (2.8) BS03 MG N/A N/A Q5SHN8 39019034
    196314 9b00:2F (2.8) BS02 MG N/A N/A Q5SHN9 39019034
    196315 9b00:2F (2.8) BS03 MG N/A N/A Q5SHN9 39019034
    196316 9b00:2F (2.8) BS04 MG N/A N/A Q5SHN9 39019034
    196317 9b00:2O (2.8) BS03 MG N/A N/A Q5SHP8 39019034
    196318 9b00:2P (2.8) BS02 MG N/A N/A Q5SHQ7 39019034
    196319 9b00:2Q (2.8) BS04 MG N/A N/A P60489 39019034
    196320 9b00:2T (2.8) BS03 MG N/A N/A P60490 39019034
    196321 9b00:2V (2.8) BS02 MG N/A N/A P60492 39019034
    196322 9b00:2W (2.8) BS02 MG N/A N/A Q5SHP3 39019034
    196323 9b00:2X (2.8) BS02 MG N/A N/A Q5SHP0 39019034
    196324 9b00:2Y (2.8) BS02 ZN N/A N/A Q5SHP9 39019034
    196325 9b00:2Z (2.8) BS03 MG N/A N/A Q5SHZ1 39019034
    196326 9b00:2d (2.8) BS02 MG N/A N/A P80373 39019034
    196327 9b00:2e (2.8) BS02 MG N/A N/A Q5SHQ5 39019034
    196328 9b00:2f (2.8) BS02 MG N/A N/A Q5SLP8 39019034
    196329 9b00:2j (2.8) BS02 MG N/A N/A Q5SHN7 39019034
    196330 9b00:2k (2.8) BS02 MG N/A N/A P80376 39019034
    196331 9b00:2l (2.8) BS02 MG N/A N/A Q5SHN3 39019034
    196332 9b00:2l (2.8) BS03 MG N/A N/A Q5SHN3 39019034
    196333 9b00:2n (2.8) BS02 ZN N/A N/A P0DOY6 39019034
    196334 9b00:2q (2.8) BS02 MG N/A N/A P0DOY7 39019034
    196335 9b03:C (2.95) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    196336 9b0k:C (3.03) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    196337 9b20:A (1.55) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196338 9b20:B (1.55) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196339 9b20:B (1.55) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196340 9b21:A (1.6) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196341 9b21:A (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196342 9b21:B (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196343 9b21:B (1.6) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196344 9b22:A (1.3) BS01 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196345 9b22:A (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196346 9b22:B (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196347 9b22:B (1.3) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    196348 9b27:C (3.51) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    196349 9b33:E (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    196350 9b33:E (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    196351 9b33:F (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    196352 9b33:F (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    196353 9b34:E (3.58) BS01 ZN ? N/A P02866 38778115
    196354 9b34:E (3.58) BS02 CA ? N/A P02866 38778115
    196355 9b34:F (3.58) BS01 ZN ? N/A P02866 38778115
    196356 9b34:F (3.58) BS02 CA ? N/A P02866 38778115
    196357 9b36:E (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    196358 9b36:E (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    196359 9b36:F (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    196360 9b36:F (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    196361 9b36:G (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    196362 9b36:G (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    196363 9b36:H (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    196364 9b36:H (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    196365 9b37:E (6.66) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    196366 9b37:E (6.66) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    196367 9b37:F (6.66) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    196368 9b37:F (6.66) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    196369 9b3d:C (3.41) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    196370 9b4e:A (2.7) BS06 CA N/A N/A P48651 39208797
    196371 9b4e:B (2.7) BS08 CA N/A N/A P48651 39208797
    196372 9b4f:A (3.27) BS01 CA N/A N/A P48651 39208797
    196373 9b4f:B (3.27) BS01 CA N/A N/A P48651 39208797
    196374 9b4g:A (2.87) BS06 CA N/A N/A P48651 39208797
    196375 9b4g:B (2.87) BS08 CA N/A N/A P48651 39208797
    196376 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    196377 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    196378 9b6j:A (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    196379 9b6j:B (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    196380 9b6j:C (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    196381 9b6j:D (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    196382 9b6k:A (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    196383 9b6k:B (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    196384 9b6k:C (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    196385 9b6k:D (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    196386 9b8t:A (2.95) BS04 MG N/A N/A Q9Y5S4 39245668
    196387 9b8w:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196388 9b8w:A (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196389 9b8w:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196390 9b8w:B (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196391 9b8w:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196392 9b8w:C (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196393 9b8w:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196394 9b8w:D (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196395 9b8x:A (3.0) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196396 9b8x:A (3.0) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196397 9b8y:A (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196398 9b8y:A (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196399 9b8y:B (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196400 9b8y:B (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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