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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194601 8wat:x (2.82) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194602 8wat:z (2.82) BS01 ZN ? GO:0003677 ... A0A8D0JYF1 38127763
    194603 8wau:o (2.78) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194604 8wau:o (2.78) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194605 8wau:o (2.78) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194606 8wau:p (2.78) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194607 8wau:q (2.78) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194608 8wau:w (2.78) BS01 ZN ? GO:0000428 ... P60899 38127763
    194609 8wau:w (2.78) BS02 ZN ? GO:0000428 ... P60899 38127763
    194610 8wau:x (2.78) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194611 8wau:z (2.78) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194612 8wav:o (2.72) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194613 8wav:o (2.72) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194614 8wav:o (2.72) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194615 8wav:p (2.72) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194616 8wav:q (2.72) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194617 8wav:w (2.72) BS01 ZN ? GO:0000428 ... P60899 38127763
    194618 8wav:w (2.72) BS02 ZN ? GO:0000428 ... P60899 38127763
    194619 8wav:x (2.72) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194620 8wav:z (2.72) BS01 ZN ? GO:0003677 ... A0A8D0JYF1 38127763
    194621 8waw:o (3.02) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194622 8waw:o (3.02) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194623 8waw:o (3.02) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194624 8waw:p (3.02) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194625 8waw:q (3.02) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194626 8waw:w (3.02) BS01 ZN ? GO:0000428 ... P60899 38127763
    194627 8waw:w (3.02) BS02 ZN ? GO:0000428 ... P60899 38127763
    194628 8waw:x (3.02) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194629 8waw:z (3.02) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194630 8wax:o (2.75) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194631 8wax:o (2.75) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194632 8wax:o (2.75) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194633 8wax:p (2.75) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194634 8wax:q (2.75) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194635 8wax:w (2.75) BS01 ZN ? GO:0000428 ... P60899 38127763
    194636 8wax:w (2.75) BS02 ZN ? GO:0000428 ... P60899 38127763
    194637 8wax:x (2.75) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194638 8wax:z (2.75) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194639 8way:o (2.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194640 8way:o (2.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194641 8way:o (2.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194642 8way:p (2.85) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194643 8way:q (2.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194644 8way:w (2.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    194645 8way:w (2.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    194646 8way:x (2.85) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194647 8way:z (2.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194648 8waz:o (2.76) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194649 8waz:o (2.76) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194650 8waz:o (2.76) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194651 8waz:p (2.76) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194652 8waz:q (2.76) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194653 8waz:w (2.76) BS01 ZN ? GO:0000428 ... P60899 38127763
    194654 8waz:w (2.76) BS02 ZN ? GO:0000428 ... P60899 38127763
    194655 8waz:x (2.76) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194656 8waz:z (2.76) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194657 8wb0:o (2.94) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194658 8wb0:o (2.94) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194659 8wb0:o (2.94) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194660 8wb0:p (2.94) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194661 8wb0:q (2.94) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194662 8wb0:w (2.94) BS01 ZN ? GO:0000428 ... P60899 38127763
    194663 8wb0:w (2.94) BS02 ZN ? GO:0000428 ... P60899 38127763
    194664 8wb0:x (2.94) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    194665 8wb0:z (2.94) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194666 8wb3:A (2.49) BS01 FE N/A N/A P02794 N/A
    194667 8wb3:A (2.49) BS02 FE N/A N/A P02794 N/A
    194668 8wb3:A (2.49) BS03 CA N/A N/A P02794 N/A
    194669 8wb4:A (2.47) BS12 FE2 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    194670 8wb4:D (2.47) BS07 FE2 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    194671 8wb4:d (2.47) BS04 FE2 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    194672 8wce:A (3.09) BS03 MG N/A N/A N/A 38661236
    194673 8wcn:B (3.2) BS05 MG 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    194674 8wd0:A (2.6) BS02 CA N/A GO:0000226 ... P81947 38905886
    194675 8wd0:C (2.6) BS02 CA N/A GO:0000226 ... P81947 38905886
    194676 8wd2:A (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    194677 8wd2:B (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    194678 8wd3:A (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    194679 8wd3:B (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    194680 8wd8:A (2.9) BS03 ZN ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194681 8wd8:A (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194682 8wd8:A (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194683 8wd8:A (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194684 8wd8:B (2.9) BS03 ZN ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194685 8wd8:B (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194686 8wd8:B (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194687 8wd8:B (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    194688 8wdb:D (2.86) BS03 MG N/A N/A I6Y482 N/A
    194689 8wdb:D (2.86) BS04 MG N/A N/A I6Y482 N/A
    194690 8wdg:A (0.99) BS01 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    194691 8wdg:A (0.99) BS02 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    194692 8wdg:A (0.99) BS04 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    194693 8wdh:A (1.7) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    194694 8wdh:A (1.7) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    194695 8wdn:A (1.55) BS01 ZN N/A N/A Q08499 38489246
    194696 8wdn:B (1.55) BS01 ZN N/A N/A Q08499 38489246
    194697 8wdo:A (1.67) BS01 ZN N/A N/A Q08499 38489246
    194698 8wdo:B (1.67) BS01 ZN N/A N/A Q08499 38489246
    194699 8wdq:A (2.2) BS02 CA N/A N/A Q9HXI4 N/A
    194700 8wdq:A (2.2) BS03 CA N/A N/A Q9HXI4 N/A
    194701 8wdq:B (2.2) BS02 CA N/A N/A Q9HXI4 N/A
    194702 8wdq:B (2.2) BS03 CA N/A N/A Q9HXI4 N/A
    194703 8wdr:A (3.47) BS01 ZN N/A N/A Q9BYF1 38467833
    194704 8wdr:C (3.47) BS01 ZN N/A N/A Q9BYF1 38467833
    194705 8wds:A (3.4) BS01 ZN N/A N/A Q9BYF1 38467833
    194706 8wds:C (3.4) BS01 ZN N/A N/A Q9BYF1 38467833
    194707 8wdu:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    194708 8wdu:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194709 8wdu:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194710 8wdu:L (2.24) BS07 FE ? GO:0009772 ... P51762 38347078
    194711 8wdu:M (2.24) BS04 FE ? GO:0009772 ... P51763 38347078
    194712 8wdu:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194713 8wdu:U (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    194714 8wdu:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    194715 8wdu:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194716 8wdv:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    194717 8wdv:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194718 8wdv:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194719 8wdv:L (2.24) BS08 FE ? GO:0009772 ... P51762 38347078
    194720 8wdv:M (2.24) BS04 FE ? GO:0009772 ... P51763 38347078
    194721 8wdv:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194722 8wdv:U (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194723 8wdv:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    194724 8wdv:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    194725 8wdy:A (2.69) BS01 ZN N/A N/A Q9BYF1 38467833
    194726 8wdz:A (2.71) BS01 ZN N/A N/A Q9BYF1 38467833
    194727 8we0:A (2.8) BS01 ZN N/A N/A Q9BYF1 38467833
    194728 8we1:A (2.47) BS01 ZN N/A N/A Q9BYF1 38467833
    194729 8we4:A (2.91) BS01 ZN N/A N/A Q9BYF1 38467833
    194730 8we6:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    194731 8we6:D (2.9) BS01 CA ? N/A P54289 37972591
    194732 8we7:A (3.2) BS01 CA ? GO:0002520 ... Q13936 37972591
    194733 8we7:D (3.2) BS01 CA ? N/A P54289 37972591
    194734 8we8:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    194735 8we8:D (2.9) BS01 CA ? N/A P54289 37972591
    194736 8we9:A (3.0) BS01 CA ? GO:0002520 ... Q13936 37972591
    194737 8we9:D (3.0) BS01 CA ? N/A P54289 37972591
    194738 8wea:D (3.2) BS01 CA ? N/A P54289 37972591
    194739 8wej:E (2.79) BS03 MG 3.6.5.2 GO:0001764 ... P63000 38355798
    194740 8wem:A (1.8) BS01 ZN N/A N/A P54355 N/A
    194741 8wem:C (1.8) BS01 ZN N/A N/A P54355 N/A
    194742 8wen:A (1.97) BS01 ZN N/A N/A O05091 N/A
    194743 8wen:C (1.97) BS01 ZN N/A N/A O05091 N/A
    194744 8weo:A (1.5) BS01 ZN N/A N/A P54355 N/A
    194745 8weo:B (1.5) BS01 ZN N/A N/A P54355 N/A
    194746 8wep:A (1.2) BS01 ZN N/A N/A P00918 N/A
    194747 8wer:A (1.42) BS01 ZN N/A N/A P00918 N/A
    194748 8wes:A (1.45) BS01 ZN N/A N/A P00918 N/A
    194749 8wev:A (2.29) BS02 MG N/A N/A A0A3N2H3K2 N/A
    194750 8wew:B (2.5) BS02 MG N/A N/A Q18DH5 N/A
    194751 8wex:A (2.33) BS01 ZN ? GO:0016740 ... A0A3A6V1D8 37895170
    194752 8wex:B (2.33) BS01 ZN ? GO:0016740 ... A0A3A6V1D8 37895170
    194753 8wfo:A (1.55) BS01 ZN N/A N/A A0A6P5Y0F4 N/A
    194754 8wfo:A (1.55) BS02 ZN N/A N/A A0A6P5Y0F4 N/A
    194755 8wfo:B (1.55) BS01 ZN N/A N/A A0A6P5Y0F4 N/A
    194756 8wfo:B (1.55) BS02 ZN N/A N/A A0A6P5Y0F4 N/A
    194757 8wg0:A (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194758 8wg0:B (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194759 8wg0:C (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194760 8wg0:D (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194761 8wg1:A (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194762 8wg1:B (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194763 8wg1:C (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194764 8wg1:D (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194765 8wg2:A (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194766 8wg2:B (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194767 8wg2:C (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194768 8wg2:D (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    194769 8wgr:A (2.75) BS03 K N/A GO:0003779 ... P23975 39048818
    194770 8wh6:D (3.27) BS02 ZN N/A N/A Q5IXS3 39167653
    194771 8wh6:E (3.27) BS01 ZN N/A N/A Q5IXS3 39167653
    194772 8who:A (1.892) BS01 CO N/A N/A P93836 N/A
    194773 8whp:A (1.919) BS01 CO N/A N/A P93836 N/A
    194774 8whq:A (1.695) BS01 CO N/A N/A P93836 N/A
    194775 8whs:D (3.33) BS01 ZN N/A N/A Q9BYF1 39071099
    194776 8whu:D (3.3) BS01 ZN N/A N/A Q9BYF1 39071099
    194777 8whu:E (3.3) BS01 ZN N/A N/A Q9BYF1 39071099
    194778 8whz:A (3.93) BS01 ZN N/A N/A Q9BYF1 39071099
    194779 8wi6:A (1.916) BS01 CO N/A N/A P93836 N/A
    194780 8wia:A (1.96) BS01 ZN N/A N/A N/A 39014102
    194781 8wia:B (1.96) BS01 ZN N/A N/A N/A 39014102
    194782 8wie:D (2.3) BS01 FE N/A N/A P02794 N/A
    194783 8wig:A (3.22) BS01 ZN N/A N/A N/A 39014102
    194784 8wig:B (3.22) BS01 ZN N/A N/A N/A 39014102
    194785 8wih:A (2.44) BS02 ZN N/A N/A N/A 39014102
    194786 8wih:B (2.44) BS02 ZN N/A N/A N/A 39014102
    194787 8wii:A (2.98) BS02 ZN N/A N/A N/A 39014102
    194788 8wii:B (2.98) BS02 ZN N/A N/A N/A 39014102
    194789 8wij:A (3.08) BS02 ZN N/A N/A N/A 39014102
    194790 8wij:B (3.08) BS02 ZN N/A N/A N/A 39014102
    194791 8wil:A (2.1) BS01 MG 3.6.4.13 GO:0001172 ... A0A7D0QVD8 38296832
    194792 8wim:A (1.84) BS01 MG 3.6.4.13 GO:0003968 ... A0A7D0QVD8 38296832
    194793 8wiv:D (3.41) BS01 MG N/A N/A N/A N/A
    194794 8wiv:M (3.41) BS02 MG N/A N/A N/A N/A
    194795 8wiv:O (3.41) BS02 MG N/A N/A N/A N/A
    194796 8wj3:M (3.36) BS02 MG N/A N/A N/A N/A
    194797 8wj3:O (3.36) BS02 MG N/A N/A N/A N/A
    194798 8wk0:O (3.34) BS02 MG N/A N/A N/A N/A
    194799 8wky:A (2.9) BS02 CA N/A N/A P32245 38345933
    194800 8wkz:A (3.3) BS02 CA N/A N/A P32245 38345933
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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