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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194001 8vty:1F (2.6) BS12 MG N/A N/A Q5SHN9 39039256
    194002 8vty:1F (2.6) BS13 MG N/A N/A Q5SHN9 39039256
    194003 8vty:1F (2.6) BS14 MG N/A N/A Q5SHN9 39039256
    194004 8vty:1G (2.6) BS03 MG N/A N/A Q5SHQ0 39039256
    194005 8vty:1G (2.6) BS04 MG N/A N/A Q5SHQ0 39039256
    194006 8vty:1N (2.6) BS02 MG N/A N/A P60488 39039256
    194007 8vty:1N (2.6) BS03 MG N/A N/A P60488 39039256
    194008 8vty:1N (2.6) BS04 MG N/A N/A P60488 39039256
    194009 8vty:1O (2.6) BS03 MG N/A N/A Q5SHP8 39039256
    194010 8vty:1P (2.6) BS02 MG N/A N/A Q5SHQ7 39039256
    194011 8vty:1P (2.6) BS03 MG N/A N/A Q5SHQ7 39039256
    194012 8vty:1Q (2.6) BS03 MG N/A N/A P60489 39039256
    194013 8vty:1Q (2.6) BS04 MG N/A N/A P60489 39039256
    194014 8vty:1Q (2.6) BS05 MG N/A N/A P60489 39039256
    194015 8vty:1R (2.6) BS02 MG N/A N/A Q9Z9H5 39039256
    194016 8vty:1R (2.6) BS03 MG N/A N/A Q9Z9H5 39039256
    194017 8vty:1R (2.6) BS04 MG N/A N/A Q9Z9H5 39039256
    194018 8vty:1R (2.6) BS05 MG N/A N/A Q9Z9H5 39039256
    194019 8vty:1U (2.6) BS02 MG N/A N/A P60491 39039256
    194020 8vty:1U (2.6) BS03 MG N/A N/A P60491 39039256
    194021 8vty:1U (2.6) BS04 MG N/A N/A P60491 39039256
    194022 8vty:1U (2.6) BS05 MG N/A N/A P60491 39039256
    194023 8vty:1U (2.6) BS06 MG N/A N/A P60491 39039256
    194024 8vty:1U (2.6) BS07 MG N/A N/A P60491 39039256
    194025 8vty:1V (2.6) BS02 MG N/A N/A P60492 39039256
    194026 8vty:1V (2.6) BS03 MG N/A N/A P60492 39039256
    194027 8vty:1V (2.6) BS04 MG N/A N/A P60492 39039256
    194028 8vty:1W (2.6) BS02 MG N/A N/A Q5SHP3 39039256
    194029 8vty:1Y (2.6) BS02 ZN N/A N/A Q5SHP9 39039256
    194030 8vty:1b (2.6) BS02 MG N/A N/A P80371 39039256
    194031 8vty:1e (2.6) BS02 MG N/A N/A Q5SHQ5 39039256
    194032 8vty:1k (2.6) BS02 MG N/A N/A P80376 39039256
    194033 8vty:1l (2.6) BS02 MG N/A N/A Q5SHN3 39039256
    194034 8vty:1m (2.6) BS02 MG N/A N/A P80377 39039256
    194035 8vty:1m (2.6) BS03 MG N/A N/A P80377 39039256
    194036 8vty:1n (2.6) BS02 MG N/A N/A P0DOY6 39039256
    194037 8vty:1n (2.6) BS03 ZN N/A N/A P0DOY6 39039256
    194038 8vty:1t (2.6) BS02 MG N/A N/A P80380 39039256
    194039 8vty:1y (2.6) BS02 MG N/A N/A P0AD49 39039256
    194040 8vty:1y (2.6) BS03 MG N/A N/A P0AD49 39039256
    194041 8vty:23 (2.6) BS03 MG N/A N/A Q5SHQ6 39039256
    194042 8vty:24 (2.6) BS02 ZN N/A N/A Q5SJE1 39039256
    194043 8vty:25 (2.6) BS02 ZN N/A N/A P80339 39039256
    194044 8vty:26 (2.6) BS02 ZN N/A N/A P35871 39039256
    194045 8vty:27 (2.6) BS02 MG N/A N/A P80340 39039256
    194046 8vty:27 (2.6) BS03 MG N/A N/A P80340 39039256
    194047 8vty:29 (2.6) BS02 ZN N/A N/A Q5SHR2 39039256
    194048 8vty:2D (2.6) BS03 MG N/A N/A P60405 39039256
    194049 8vty:2D (2.6) BS04 MG N/A N/A P60405 39039256
    194050 8vty:2D (2.6) BS05 MG N/A N/A P60405 39039256
    194051 8vty:2D (2.6) BS06 MG N/A N/A P60405 39039256
    194052 8vty:2D (2.6) BS07 MG N/A N/A P60405 39039256
    194053 8vty:2D (2.6) BS08 MG N/A N/A P60405 39039256
    194054 8vty:2D (2.6) BS09 MG N/A N/A P60405 39039256
    194055 8vty:2D (2.6) BS10 MG N/A N/A P60405 39039256
    194056 8vty:2E (2.6) BS02 MG N/A N/A Q5SHN8 39039256
    194057 8vty:2E (2.6) BS03 MG N/A N/A Q5SHN8 39039256
    194058 8vty:2F (2.6) BS02 MG N/A N/A Q5SHN9 39039256
    194059 8vty:2F (2.6) BS03 MG N/A N/A Q5SHN9 39039256
    194060 8vty:2F (2.6) BS04 MG N/A N/A Q5SHN9 39039256
    194061 8vty:2F (2.6) BS05 MG N/A N/A Q5SHN9 39039256
    194062 8vty:2G (2.6) BS03 MG N/A N/A Q5SHQ0 39039256
    194063 8vty:2G (2.6) BS04 MG N/A N/A Q5SHQ0 39039256
    194064 8vty:2Q (2.6) BS03 MG N/A N/A P60489 39039256
    194065 8vty:2Q (2.6) BS04 MG N/A N/A P60489 39039256
    194066 8vty:2U (2.6) BS02 MG N/A N/A P60491 39039256
    194067 8vty:2V (2.6) BS02 MG N/A N/A P60492 39039256
    194068 8vty:2V (2.6) BS03 MG N/A N/A P60492 39039256
    194069 8vty:2W (2.6) BS02 MG N/A N/A Q5SHP3 39039256
    194070 8vty:2W (2.6) BS03 MG N/A N/A Q5SHP3 39039256
    194071 8vty:2Y (2.6) BS02 ZN N/A N/A Q5SHP9 39039256
    194072 8vty:2f (2.6) BS02 MG N/A N/A Q5SLP8 39039256
    194073 8vty:2f (2.6) BS03 MG N/A N/A Q5SLP8 39039256
    194074 8vty:2j (2.6) BS02 MG N/A N/A Q5SHN7 39039256
    194075 8vty:2k (2.6) BS02 MG N/A N/A P80376 39039256
    194076 8vty:2l (2.6) BS02 MG N/A N/A Q5SHN3 39039256
    194077 8vty:2n (2.6) BS02 ZN N/A N/A P0DOY6 39039256
    194078 8vty:2t (2.6) BS02 MG N/A N/A P80380 39039256
    194079 8vvl:L (1.8) BS01 CO N/A N/A N/A 39002130
    194080 8vw0:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194081 8vw0:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194082 8vw0:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194083 8vw0:A (1.7) BS05 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194084 8vw1:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194085 8vw1:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194086 8vw1:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194087 8vw2:A (1.95) BS01 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194088 8vw2:A (1.95) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194089 8vw2:A (1.95) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    194090 8vw2:A (1.95) BS05 MG 6.3.2.9 GO:0005515 ... P14900 N/A
    194091 8vw4:A (2.4) BS01 MG N/A N/A Q13191 38894924
    194092 8vw4:B (2.4) BS02 MG N/A N/A Q13191 38894924
    194093 8vw5:A (1.76) BS01 MG N/A N/A Q13191 38894924
    194094 8vw5:A (1.76) BS02 CA N/A N/A Q13191 38894924
    194095 8vw5:B (1.76) BS01 MG N/A N/A Q13191 38894924
    194096 8vw5:B (1.76) BS03 CA N/A N/A Q13191 38894924
    194097 8vy3:C (2.98) BS01 ZN N/A N/A P09884 N/A
    194098 8vy3:C (2.98) BS02 ZN N/A N/A P09884 N/A
    194099 8w09:A (3.2) BS05 MG ? GO:0003676 ... P12497 38582148
    194100 8w09:A (3.2) BS06 MG ? GO:0003676 ... P12497 38582148
    194101 8w09:A (3.2) BS07 ZN ? GO:0003676 ... P12497 38582148
    194102 8w09:I (3.2) BS05 MG ? GO:0003676 ... P12497 38582148
    194103 8w09:I (3.2) BS06 MG ? GO:0003676 ... P12497 38582148
    194104 8w09:I (3.2) BS07 ZN ? GO:0003676 ... P12497 38582148
    194105 8w13:A (1.81) BS02 ZN N/A N/A Q9H7Z6 39236793
    194106 8w1d:A (1.3) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194107 8w1d:A (1.3) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194108 8w1e:A (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194109 8w1e:A (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194110 8w1e:B (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194111 8w1e:B (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194112 8w1e:C (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194113 8w1e:C (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194114 8w1e:D (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194115 8w1e:D (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194116 8w1e:E (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194117 8w1e:E (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194118 8w1e:F (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194119 8w1e:F (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194120 8w1e:G (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194121 8w1e:G (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194122 8w1e:H (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194123 8w1e:H (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194124 8w1e:I (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194125 8w1e:I (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194126 8w1e:J (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194127 8w1e:J (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194128 8w1e:K (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194129 8w1e:K (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194130 8w1e:L (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194131 8w1e:L (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194132 8w1f:A (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194133 8w1f:A (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194134 8w1f:A (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194135 8w1f:B (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194136 8w1f:B (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194137 8w1f:B (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194138 8w1f:C (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194139 8w1f:C (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194140 8w1f:C (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194141 8w1f:D (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194142 8w1f:D (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194143 8w1f:D (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194144 8w1f:E (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194145 8w1f:E (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194146 8w1f:E (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194147 8w1f:F (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194148 8w1f:F (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194149 8w1f:F (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194150 8w1f:G (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194151 8w1f:G (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194152 8w1f:G (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194153 8w1f:H (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194154 8w1f:H (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194155 8w1f:H (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194156 8w1f:I (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194157 8w1f:I (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194158 8w1f:I (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194159 8w1f:J (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194160 8w1f:J (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194161 8w1f:J (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194162 8w1f:K (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194163 8w1f:K (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194164 8w1f:K (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194165 8w1f:L (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    194166 8w1f:L (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194167 8w1f:L (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    194168 8w1q:A (1.56) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    194169 8w1q:B (1.56) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    194170 8w21:A (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    194171 8w21:B (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    194172 8w21:C (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    194173 8w21:E (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    194174 8w21:G (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    194175 8w21:H (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    194176 8w2r:A (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    194177 8w2r:A (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    194178 8w2r:A (3.23) BS07 ZN ? GO:0003676 ... P12497 38582148
    194179 8w2r:I (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    194180 8w2r:I (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    194181 8w2r:I (3.23) BS07 ZN ? GO:0003676 ... P12497 38582148
    194182 8w31:A (2.5) BS01 ZN N/A N/A Q9JK66 N/A
    194183 8w31:A (2.5) BS02 ZN N/A N/A Q9JK66 N/A
    194184 8w31:A (2.5) BS03 ZN N/A N/A Q9JK66 N/A
    194185 8w31:A (2.5) BS04 ZN N/A N/A Q9JK66 N/A
    194186 8w31:A (2.5) BS05 ZN N/A N/A Q9JK66 N/A
    194187 8w31:A (2.5) BS06 ZN N/A N/A Q9JK66 N/A
    194188 8w34:A (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    194189 8w34:A (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    194190 8w34:A (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    194191 8w34:I (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    194192 8w34:I (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    194193 8w34:I (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    194194 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 38331992
    194195 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 38331992
    194196 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 38331992
    194197 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 38331992
    194198 8w4g:A (2.15) BS01 CA N/A N/A N/A 38938812
    194199 8w4i:A (2.9) BS01 CA N/A N/A N/A 38938812
    194200 8w4m:A (2.18) BS03 ZN N/A N/A P0DOX5 38938812
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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