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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    193601 8vtv:1E (2.55) BS05 MG N/A N/A Q5SHN8 39039256
    193602 8vtv:1F (2.55) BS02 MG N/A N/A Q5SHN9 39039256
    193603 8vtv:1F (2.55) BS03 MG N/A N/A Q5SHN9 39039256
    193604 8vtv:1F (2.55) BS04 MG N/A N/A Q5SHN9 39039256
    193605 8vtv:1F (2.55) BS05 MG N/A N/A Q5SHN9 39039256
    193606 8vtv:1F (2.55) BS06 MG N/A N/A Q5SHN9 39039256
    193607 8vtv:1F (2.55) BS07 MG N/A N/A Q5SHN9 39039256
    193608 8vtv:1F (2.55) BS08 MG N/A N/A Q5SHN9 39039256
    193609 8vtv:1F (2.55) BS09 MG N/A N/A Q5SHN9 39039256
    193610 8vtv:1F (2.55) BS10 MG N/A N/A Q5SHN9 39039256
    193611 8vtv:1G (2.55) BS04 MG N/A N/A Q5SHQ0 39039256
    193612 8vtv:1G (2.55) BS05 MG N/A N/A Q5SHQ0 39039256
    193613 8vtv:1I (2.55) BS02 MG N/A N/A Q5SLQ1 39039256
    193614 8vtv:1N (2.55) BS02 MG N/A N/A P60488 39039256
    193615 8vtv:1N (2.55) BS03 MG N/A N/A P60488 39039256
    193616 8vtv:1N (2.55) BS04 MG N/A N/A P60488 39039256
    193617 8vtv:1N (2.55) BS05 MG N/A N/A P60488 39039256
    193618 8vtv:1N (2.55) BS06 MG N/A N/A P60488 39039256
    193619 8vtv:1O (2.55) BS03 MG N/A N/A Q5SHP8 39039256
    193620 8vtv:1P (2.55) BS02 MG N/A N/A Q5SHQ7 39039256
    193621 8vtv:1P (2.55) BS03 MG N/A N/A Q5SHQ7 39039256
    193622 8vtv:1P (2.55) BS04 MG N/A N/A Q5SHQ7 39039256
    193623 8vtv:1P (2.55) BS05 MG N/A N/A Q5SHQ7 39039256
    193624 8vtv:1Q (2.55) BS05 MG N/A N/A P60489 39039256
    193625 8vtv:1Q (2.55) BS06 MG N/A N/A P60489 39039256
    193626 8vtv:1Q (2.55) BS07 MG N/A N/A P60489 39039256
    193627 8vtv:1Q (2.55) BS08 MG N/A N/A P60489 39039256
    193628 8vtv:1Q (2.55) BS09 MG N/A N/A P60489 39039256
    193629 8vtv:1R (2.55) BS02 MG N/A N/A Q9Z9H5 39039256
    193630 8vtv:1S (2.55) BS03 MG N/A N/A Q5SHQ4 39039256
    193631 8vtv:1S (2.55) BS04 MG N/A N/A Q5SHQ4 39039256
    193632 8vtv:1U (2.55) BS02 MG N/A N/A P60491 39039256
    193633 8vtv:1U (2.55) BS03 MG N/A N/A P60491 39039256
    193634 8vtv:1U (2.55) BS04 MG N/A N/A P60491 39039256
    193635 8vtv:1U (2.55) BS05 MG N/A N/A P60491 39039256
    193636 8vtv:1U (2.55) BS06 MG N/A N/A P60491 39039256
    193637 8vtv:1U (2.55) BS07 MG N/A N/A P60491 39039256
    193638 8vtv:1V (2.55) BS02 MG N/A N/A P60492 39039256
    193639 8vtv:1V (2.55) BS03 MG N/A N/A P60492 39039256
    193640 8vtv:1V (2.55) BS04 MG N/A N/A P60492 39039256
    193641 8vtv:1V (2.55) BS05 MG N/A N/A P60492 39039256
    193642 8vtv:1V (2.55) BS06 MG N/A N/A P60492 39039256
    193643 8vtv:1W (2.55) BS02 MG N/A N/A Q5SHP3 39039256
    193644 8vtv:1W (2.55) BS03 MG N/A N/A Q5SHP3 39039256
    193645 8vtv:1W (2.55) BS04 MG N/A N/A Q5SHP3 39039256
    193646 8vtv:1W (2.55) BS05 MG N/A N/A Q5SHP3 39039256
    193647 8vtv:1W (2.55) BS06 MG N/A N/A Q5SHP3 39039256
    193648 8vtv:1W (2.55) BS07 MG N/A N/A Q5SHP3 39039256
    193649 8vtv:1X (2.55) BS02 MG N/A N/A Q5SHP0 39039256
    193650 8vtv:1X (2.55) BS03 MG N/A N/A Q5SHP0 39039256
    193651 8vtv:1X (2.55) BS04 MG N/A N/A Q5SHP0 39039256
    193652 8vtv:1X (2.55) BS05 MG N/A N/A Q5SHP0 39039256
    193653 8vtv:1X (2.55) BS06 MG N/A N/A Q5SHP0 39039256
    193654 8vtv:1Y (2.55) BS02 MG N/A N/A Q5SHP9 39039256
    193655 8vtv:1Y (2.55) BS03 ZN N/A N/A Q5SHP9 39039256
    193656 8vtv:1e (2.55) BS02 MG N/A N/A Q5SHQ5 39039256
    193657 8vtv:1e (2.55) BS03 MG N/A N/A Q5SHQ5 39039256
    193658 8vtv:1k (2.55) BS02 MG N/A N/A P80376 39039256
    193659 8vtv:1l (2.55) BS03 MG N/A N/A Q5SHN3 39039256
    193660 8vtv:1m (2.55) BS03 MG N/A N/A P80377 39039256
    193661 8vtv:1n (2.55) BS02 ZN N/A N/A P0DOY6 39039256
    193662 8vtv:1t (2.55) BS02 MG N/A N/A P80380 39039256
    193663 8vtv:21 (2.55) BS03 MG N/A N/A P60494 39039256
    193664 8vtv:23 (2.55) BS02 MG N/A N/A Q5SHQ6 39039256
    193665 8vtv:24 (2.55) BS02 ZN N/A N/A Q5SJE1 39039256
    193666 8vtv:25 (2.55) BS02 MG N/A N/A P80339 39039256
    193667 8vtv:25 (2.55) BS03 ZN N/A N/A P80339 39039256
    193668 8vtv:26 (2.55) BS02 MG N/A N/A P35871 39039256
    193669 8vtv:26 (2.55) BS03 ZN N/A N/A P35871 39039256
    193670 8vtv:27 (2.55) BS02 MG N/A N/A P80340 39039256
    193671 8vtv:28 (2.55) BS02 MG N/A N/A Q5SKU1 39039256
    193672 8vtv:29 (2.55) BS02 MG N/A N/A Q5SHR2 39039256
    193673 8vtv:29 (2.55) BS03 ZN N/A N/A Q5SHR2 39039256
    193674 8vtv:2D (2.55) BS03 MG N/A N/A P60405 39039256
    193675 8vtv:2D (2.55) BS04 MG N/A N/A P60405 39039256
    193676 8vtv:2D (2.55) BS05 MG N/A N/A P60405 39039256
    193677 8vtv:2E (2.55) BS02 MG N/A N/A Q5SHN8 39039256
    193678 8vtv:2F (2.55) BS02 MG N/A N/A Q5SHN9 39039256
    193679 8vtv:2F (2.55) BS03 MG N/A N/A Q5SHN9 39039256
    193680 8vtv:2F (2.55) BS04 MG N/A N/A Q5SHN9 39039256
    193681 8vtv:2F (2.55) BS05 MG N/A N/A Q5SHN9 39039256
    193682 8vtv:2G (2.55) BS04 MG N/A N/A Q5SHQ0 39039256
    193683 8vtv:2Q (2.55) BS05 MG N/A N/A P60489 39039256
    193684 8vtv:2T (2.55) BS03 MG N/A N/A P60490 39039256
    193685 8vtv:2U (2.55) BS02 MG N/A N/A P60491 39039256
    193686 8vtv:2V (2.55) BS02 MG N/A N/A P60492 39039256
    193687 8vtv:2W (2.55) BS02 MG N/A N/A Q5SHP3 39039256
    193688 8vtv:2W (2.55) BS03 MG N/A N/A Q5SHP3 39039256
    193689 8vtv:2X (2.55) BS02 MG N/A N/A Q5SHP0 39039256
    193690 8vtv:2Y (2.55) BS02 ZN N/A N/A Q5SHP9 39039256
    193691 8vtv:2Z (2.55) BS03 MG N/A N/A Q5SHZ1 39039256
    193692 8vtv:2d (2.55) BS02 MG N/A N/A P80373 39039256
    193693 8vtv:2e (2.55) BS02 MG N/A N/A Q5SHQ5 39039256
    193694 8vtv:2f (2.55) BS02 MG N/A N/A Q5SLP8 39039256
    193695 8vtv:2k (2.55) BS02 MG N/A N/A P80376 39039256
    193696 8vtv:2l (2.55) BS02 MG N/A N/A Q5SHN3 39039256
    193697 8vtv:2l (2.55) BS03 MG N/A N/A Q5SHN3 39039256
    193698 8vtv:2n (2.55) BS02 ZN N/A N/A P0DOY6 39039256
    193699 8vtv:2q (2.55) BS02 MG N/A N/A P0DOY7 39039256
    193700 8vtv:2q (2.55) BS03 MG N/A N/A P0DOY7 39039256
    193701 8vtw:10 (2.35) BS03 MG N/A N/A P60493 39039256
    193702 8vtw:10 (2.35) BS04 MG N/A N/A P60493 39039256
    193703 8vtw:10 (2.35) BS05 MG N/A N/A P60493 39039256
    193704 8vtw:11 (2.35) BS02 MG N/A N/A P60494 39039256
    193705 8vtw:13 (2.35) BS03 MG N/A N/A Q5SHQ6 39039256
    193706 8vtw:13 (2.35) BS04 MG N/A N/A Q5SHQ6 39039256
    193707 8vtw:14 (2.35) BS02 ZN N/A N/A Q5SJE1 39039256
    193708 8vtw:15 (2.35) BS02 MG N/A N/A P80339 39039256
    193709 8vtw:15 (2.35) BS03 MG N/A N/A P80339 39039256
    193710 8vtw:15 (2.35) BS04 ZN N/A N/A P80339 39039256
    193711 8vtw:16 (2.35) BS02 ZN N/A N/A P35871 39039256
    193712 8vtw:17 (2.35) BS02 MG N/A N/A P80340 39039256
    193713 8vtw:17 (2.35) BS03 MG N/A N/A P80340 39039256
    193714 8vtw:18 (2.35) BS02 MG N/A N/A Q5SKU1 39039256
    193715 8vtw:18 (2.35) BS03 MG N/A N/A Q5SKU1 39039256
    193716 8vtw:19 (2.35) BS02 ZN N/A N/A Q5SHR2 39039256
    193717 8vtw:1D (2.35) BS03 MG N/A N/A P60405 39039256
    193718 8vtw:1D (2.35) BS04 MG N/A N/A P60405 39039256
    193719 8vtw:1D (2.35) BS05 MG N/A N/A P60405 39039256
    193720 8vtw:1D (2.35) BS06 MG N/A N/A P60405 39039256
    193721 8vtw:1D (2.35) BS07 MG N/A N/A P60405 39039256
    193722 8vtw:1D (2.35) BS08 MG N/A N/A P60405 39039256
    193723 8vtw:1D (2.35) BS09 MG N/A N/A P60405 39039256
    193724 8vtw:1D (2.35) BS10 MG N/A N/A P60405 39039256
    193725 8vtw:1D (2.35) BS11 MG N/A N/A P60405 39039256
    193726 8vtw:1D (2.35) BS12 MG N/A N/A P60405 39039256
    193727 8vtw:1E (2.35) BS02 MG N/A N/A Q5SHN8 39039256
    193728 8vtw:1E (2.35) BS03 MG N/A N/A Q5SHN8 39039256
    193729 8vtw:1E (2.35) BS04 MG N/A N/A Q5SHN8 39039256
    193730 8vtw:1E (2.35) BS05 MG N/A N/A Q5SHN8 39039256
    193731 8vtw:1F (2.35) BS02 MG N/A N/A Q5SHN9 39039256
    193732 8vtw:1F (2.35) BS03 MG N/A N/A Q5SHN9 39039256
    193733 8vtw:1F (2.35) BS04 MG N/A N/A Q5SHN9 39039256
    193734 8vtw:1F (2.35) BS05 MG N/A N/A Q5SHN9 39039256
    193735 8vtw:1F (2.35) BS07 MG N/A N/A Q5SHN9 39039256
    193736 8vtw:1F (2.35) BS08 MG N/A N/A Q5SHN9 39039256
    193737 8vtw:1F (2.35) BS09 MG N/A N/A Q5SHN9 39039256
    193738 8vtw:1F (2.35) BS10 MG N/A N/A Q5SHN9 39039256
    193739 8vtw:1F (2.35) BS11 MG N/A N/A Q5SHN9 39039256
    193740 8vtw:1F (2.35) BS12 MG N/A N/A Q5SHN9 39039256
    193741 8vtw:1F (2.35) BS13 MG N/A N/A Q5SHN9 39039256
    193742 8vtw:1F (2.35) BS14 MG N/A N/A Q5SHN9 39039256
    193743 8vtw:1F (2.35) BS15 MG N/A N/A Q5SHN9 39039256
    193744 8vtw:1G (2.35) BS03 MG N/A N/A Q5SHQ0 39039256
    193745 8vtw:1G (2.35) BS04 MG N/A N/A Q5SHQ0 39039256
    193746 8vtw:1G (2.35) BS05 MG N/A N/A Q5SHQ0 39039256
    193747 8vtw:1N (2.35) BS02 MG N/A N/A P60488 39039256
    193748 8vtw:1N (2.35) BS03 MG N/A N/A P60488 39039256
    193749 8vtw:1P (2.35) BS02 MG N/A N/A Q5SHQ7 39039256
    193750 8vtw:1P (2.35) BS03 MG N/A N/A Q5SHQ7 39039256
    193751 8vtw:1Q (2.35) BS03 MG N/A N/A P60489 39039256
    193752 8vtw:1Q (2.35) BS04 MG N/A N/A P60489 39039256
    193753 8vtw:1Q (2.35) BS05 MG N/A N/A P60489 39039256
    193754 8vtw:1Q (2.35) BS06 MG N/A N/A P60489 39039256
    193755 8vtw:1R (2.35) BS02 MG N/A N/A Q9Z9H5 39039256
    193756 8vtw:1R (2.35) BS03 MG N/A N/A Q9Z9H5 39039256
    193757 8vtw:1R (2.35) BS04 MG N/A N/A Q9Z9H5 39039256
    193758 8vtw:1U (2.35) BS02 MG N/A N/A P60491 39039256
    193759 8vtw:1U (2.35) BS03 MG N/A N/A P60491 39039256
    193760 8vtw:1U (2.35) BS04 MG N/A N/A P60491 39039256
    193761 8vtw:1U (2.35) BS05 MG N/A N/A P60491 39039256
    193762 8vtw:1V (2.35) BS02 MG N/A N/A P60492 39039256
    193763 8vtw:1V (2.35) BS03 MG N/A N/A P60492 39039256
    193764 8vtw:1V (2.35) BS04 MG N/A N/A P60492 39039256
    193765 8vtw:1V (2.35) BS05 MG N/A N/A P60492 39039256
    193766 8vtw:1W (2.35) BS02 MG N/A N/A Q5SHP3 39039256
    193767 8vtw:1Y (2.35) BS02 ZN N/A N/A Q5SHP9 39039256
    193768 8vtw:1b (2.35) BS02 MG N/A N/A P80371 39039256
    193769 8vtw:1d (2.35) BS02 MG N/A N/A P80373 39039256
    193770 8vtw:1e (2.35) BS02 MG N/A N/A Q5SHQ5 39039256
    193771 8vtw:1f (2.35) BS02 MG N/A N/A Q5SLP8 39039256
    193772 8vtw:1k (2.35) BS02 MG N/A N/A P80376 39039256
    193773 8vtw:1l (2.35) BS02 MG N/A N/A Q5SHN3 39039256
    193774 8vtw:1m (2.35) BS03 MG N/A N/A P80377 39039256
    193775 8vtw:1n (2.35) BS02 ZN N/A N/A P0DOY6 39039256
    193776 8vtw:1t (2.35) BS02 MG N/A N/A P80380 39039256
    193777 8vtw:1y (2.35) BS02 MG N/A N/A P0AD49 39039256
    193778 8vtw:20 (2.35) BS03 MG N/A N/A P60493 39039256
    193779 8vtw:23 (2.35) BS03 MG N/A N/A Q5SHQ6 39039256
    193780 8vtw:24 (2.35) BS02 ZN N/A N/A Q5SJE1 39039256
    193781 8vtw:25 (2.35) BS02 MG N/A N/A P80339 39039256
    193782 8vtw:25 (2.35) BS03 ZN N/A N/A P80339 39039256
    193783 8vtw:26 (2.35) BS02 MG N/A N/A P35871 39039256
    193784 8vtw:26 (2.35) BS03 ZN N/A N/A P35871 39039256
    193785 8vtw:27 (2.35) BS02 MG N/A N/A P80340 39039256
    193786 8vtw:27 (2.35) BS03 MG N/A N/A P80340 39039256
    193787 8vtw:27 (2.35) BS04 MG N/A N/A P80340 39039256
    193788 8vtw:29 (2.35) BS02 ZN N/A N/A Q5SHR2 39039256
    193789 8vtw:2D (2.35) BS02 MG N/A N/A P60405 39039256
    193790 8vtw:2D (2.35) BS03 MG N/A N/A P60405 39039256
    193791 8vtw:2D (2.35) BS04 MG N/A N/A P60405 39039256
    193792 8vtw:2D (2.35) BS05 MG N/A N/A P60405 39039256
    193793 8vtw:2D (2.35) BS06 MG N/A N/A P60405 39039256
    193794 8vtw:2D (2.35) BS07 MG N/A N/A P60405 39039256
    193795 8vtw:2E (2.35) BS02 MG N/A N/A Q5SHN8 39039256
    193796 8vtw:2E (2.35) BS03 MG N/A N/A Q5SHN8 39039256
    193797 8vtw:2F (2.35) BS02 MG N/A N/A Q5SHN9 39039256
    193798 8vtw:2F (2.35) BS03 MG N/A N/A Q5SHN9 39039256
    193799 8vtw:2F (2.35) BS04 MG N/A N/A Q5SHN9 39039256
    193800 8vtw:2F (2.35) BS05 MG N/A N/A Q5SHN9 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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