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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    193001 8v7i:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    193002 8v7j:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    193003 8v7j:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    193004 8v7k:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    193005 8v7k:A (1.65) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    193006 8v7z:A (3.4) BS01 MG N/A GO:0005254 ... P13569 39107303
    193007 8v7z:A (3.4) BS02 MG N/A GO:0005254 ... P13569 39107303
    193008 8v80:A (2.34) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193009 8v80:B (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193010 8v80:C (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193011 8v80:D (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193012 8v80:E (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193013 8v82:A (2.61) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193014 8v82:B (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193015 8v82:C (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193016 8v82:D (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193017 8v82:E (2.61) BS04 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193018 8v83:j (2.53) BS03 ZN ? GO:0000448 ... P49166 38632236
    193019 8v83:u (2.53) BS02 ZN ? GO:0001671 ... Q07915 38632236
    193020 8v84:b (2.7) BS03 MG ? GO:0000054 ... Q02892 38632236
    193021 8v84:j (2.7) BS03 ZN ? GO:0000448 ... P49166 38632236
    193022 8v84:u (2.7) BS02 ZN ? GO:0001671 ... Q07915 38632236
    193023 8v87:g (2.66) BS02 ZN ? GO:0002181 ... P87262 38632236
    193024 8v87:j (2.66) BS03 ZN ? GO:0000448 ... P49166 38632236
    193025 8v88:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193026 8v88:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193027 8v88:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193028 8v88:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193029 8v88:E (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193030 8v8a:A (2.19) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193031 8v8a:B (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193032 8v8a:C (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193033 8v8a:D (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193034 8v8a:E (2.19) BS04 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193035 8v8c:B (3.29) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193036 8v8d:B (3.31) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193037 8v8d:C (3.31) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    193038 8v9g:A (1.62) BS02 MG 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    193039 8v9h:A (1.5) BS02 CA 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    193040 8v9i:A (1.981) BS02 MG 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    193041 8v9i:B (1.981) BS02 MG 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    193042 8v9j:5 (3.1) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    193043 8v9k:5 (3.1) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    193044 8v9k:Z (3.1) BS02 ZN ? GO:0003735 ... I7FJ52 38355796
    193045 8v9l:5 (3.0) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    193046 8v9q:A (2.29) BS04 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    193047 8v9q:B (2.29) BS03 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    193048 8va2:a (4.5) BS02 MG 3.6.5.- GO:0000226 ... P68363 N/A
    193049 8val:C (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193050 8val:C (3.7) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    193051 8val:D (3.7) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193052 8val:E (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    193053 8vam:B (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193054 8vam:B (3.9) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    193055 8vam:C (3.9) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193056 8vam:D (3.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193057 8vam:E (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    193058 8vap:B (3.0) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193059 8vap:C (3.0) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193060 8vap:D (3.0) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    193061 8vap:D (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193062 8vap:E (3.0) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    193063 8vaq:B (3.8) BS03 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    193064 8vaq:D (3.8) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    193065 8vaq:D (3.8) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193066 8vaq:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    193067 8var:B (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193068 8var:C (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193069 8var:D (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193070 8var:D (3.9) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    193071 8var:E (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    193072 8vas:B (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193073 8vas:C (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193074 8vas:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    193075 8vat:B (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193076 8vat:C (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    193077 8vat:D (3.2) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    193078 8vat:E (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    193079 8vby:A (3.19) BS05 ZN N/A N/A Q01959 39112705
    193080 8vc5:A (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 N/A
    193081 8vc5:B (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 N/A
    193082 8vcj:D (3.32) BS02 MG N/A GO:0003677 ... P05846 38834067
    193083 8vcj:X (3.32) BS02 ZN N/A N/A P13991 38834067
    193084 8vcj:Y (3.32) BS01 ZN N/A N/A P13991 38834067
    193085 8vct:E (3.83) BS02 MG N/A GO:0003677 ... P05846 38834067
    193086 8vct:X (3.83) BS02 ZN N/A N/A P13991 38834067
    193087 8vct:Y (3.83) BS01 ZN N/A N/A P13991 38834067
    193088 8vdk:A (1.8) BS01 CA N/A N/A Q99W47 N/A
    193089 8vdk:A (1.8) BS02 CA N/A N/A Q99W47 N/A
    193090 8vdk:A (1.8) BS03 CA N/A N/A Q99W47 N/A
    193091 8vdk:A (1.8) BS04 CA N/A N/A Q99W47 N/A
    193092 8vdk:A (1.8) BS05 CA N/A N/A Q99W47 N/A
    193093 8vec:A (2.0) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 39043718
    193094 8vfa:A (2.05) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193095 8vfa:A (2.05) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193096 8vfb:A (2.64) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193097 8vfb:A (2.64) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193098 8vfd:A (2.1) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193099 8vfd:A (2.1) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193100 8vfh:A (2.01) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193101 8vfh:A (2.01) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193102 8vfi:A (1.77) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193103 8vfi:A (1.77) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    193104 8vg0:T (3.07) BS03 ZN N/A N/A P0AEX9
    P43694    		 39121853
    193105 8vg1:T (2.48) BS03 ZN N/A N/A P0AEX9
    P43694    		 39121853
    193106 8vgz:A (2.09) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    193107 8vgz:A (2.09) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    193108 8vh7:A (1.982) BS02 MN N/A N/A Q5SGE1 N/A
    193109 8vh7:B (1.982) BS02 MN N/A N/A Q5SGE1 N/A
    193110 8vh8:A (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    193111 8vh8:B (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    193112 8vh8:C (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    193113 8vh8:D (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    193114 8vha:A (2.28) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    193115 8vhd:A (2.38) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    193116 8vhd:D (2.38) BS03 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    193117 8vhe:A (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    193118 8vhe:B (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    193119 8vhe:C (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    193120 8vhe:D (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    193121 8vhw:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    193122 8vhw:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    193123 8vhy:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    193124 8vhy:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    193125 8vig:A (1.6) BS01 FE N/A N/A A0A978T1Y9 39216472
    193126 8vih:A (1.55) BS01 FE N/A N/A B1WTS6 39216472
    193127 8vih:B (1.55) BS01 FE N/A N/A B1WTS6 39216472
    193128 8vii:A (1.621) BS01 MN N/A N/A B1WTS6 39216472
    193129 8vii:B (1.621) BS01 MN N/A N/A B1WTS6 39216472
    193130 8vik:A (1.961) BS01 FE N/A N/A B1WTS6 39216472
    193131 8vik:B (1.961) BS01 FE N/A N/A B1WTS6 39216472
    193132 8vil:A (1.95) BS01 FE N/A N/A B1WTS6 39216472
    193133 8vil:B (1.95) BS01 FE N/A N/A B1WTS6 39216472
    193134 8viw:A (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    193135 8viw:B (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    193136 8viw:C (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    193137 8viw:D (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    193138 8vj0:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    193139 8vj0:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    193140 8vj4:A (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    193141 8vj4:B (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    193142 8vj5:A (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    193143 8vj5:B (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    193144 8vj8:A (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    193145 8vj8:B (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    193146 8vjj:A (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193147 8vjj:B (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193148 8vjj:C (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193149 8vjj:D (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193150 8vjk:A (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193151 8vjk:A (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193152 8vjk:B (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193153 8vjk:B (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193154 8vjk:C (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193155 8vjk:C (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193156 8vjk:D (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193157 8vjk:D (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193158 8vju:A (1.99) BS02 ZN N/A N/A Q9BYT8 39117724
    193159 8vjv:A (2.12) BS02 ZN N/A N/A Q9BYT8 39117724
    193160 8vjw:A (2.491) BS03 ZN N/A N/A Q9BYT8 39117724
    193161 8vjw:B (2.491) BS03 ZN N/A N/A Q9BYT8 39117724
    193162 8vjx:A (2.89) BS02 ZN N/A N/A Q9BYT8 39117724
    193163 8vjy:A (1.95) BS02 ZN N/A N/A Q9BYT8 39117724
    193164 8vjy:C (1.95) BS02 ZN N/A N/A Q9BYT8 39117724
    193165 8vk3:A (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193166 8vk3:B (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193167 8vk3:C (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193168 8vk3:D (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193169 8vk4:A (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193170 8vk4:A (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193171 8vk4:B (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193172 8vk4:B (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193173 8vk4:C (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193174 8vk4:C (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193175 8vk4:D (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    193176 8vk4:D (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    193177 8vk4:I (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193178 8vk4:I (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193179 8vk4:J (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193180 8vk4:J (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193181 8vk4:K (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193182 8vk4:K (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193183 8vk4:L (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193184 8vk4:L (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193185 8vk4:M (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193186 8vk4:M (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193187 8vk4:N (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193188 8vk4:N (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193189 8vk4:O (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193190 8vk4:O (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193191 8vk4:P (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    193192 8vk4:P (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    193193 8vkt:A (1.398) BS01 ZN 3.5.1.18 GO:0006526 ... A0A1S8KJG1 38740150
    193194 8vkt:A (1.398) BS02 ZN 3.5.1.18 GO:0006526 ... A0A1S8KJG1 38740150
    193195 8vl7:A (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    193196 8vl7:A (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    193197 8vl7:B (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    193198 8vl7:B (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    193199 8vl7:C (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    193200 8vl7:C (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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