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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    189801 8sr9:C (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    189802 8sr9:D (3.05) BS04 MG ? GO:0005216 ... F2UB89 38773335
    189803 8sr9:D (3.05) BS05 MG ? GO:0005216 ... F2UB89 38773335
    189804 8sra:A (2.93) BS01 CA ? GO:0005216 ... F2UB89 38773335
    189805 8sra:A (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    189806 8sra:B (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    189807 8sra:B (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    189808 8sra:C (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    189809 8sra:C (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    189810 8sra:D (2.93) BS04 CA ? GO:0005216 ... F2UB89 38773335
    189811 8sra:D (2.93) BS05 CA ? GO:0005216 ... F2UB89 38773335
    189812 8src:A (2.92) BS02 CA ? GO:0005216 ... F2UB89 38773335
    189813 8src:A (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    189814 8src:A (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    189815 8src:A (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    189816 8src:B (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    189817 8src:B (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    189818 8src:B (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    189819 8src:B (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    189820 8src:C (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    189821 8src:C (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    189822 8src:C (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    189823 8src:C (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    189824 8src:D (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    189825 8src:D (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    189826 8src:D (2.92) BS07 CA ? GO:0005216 ... F2UB89 38773335
    189827 8src:D (2.92) BS08 CA ? GO:0005216 ... F2UB89 38773335
    189828 8srd:A (2.91) BS02 MG ? GO:0005216 ... F2UB89 N/A
    189829 8srd:B (2.91) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189830 8srd:C (2.91) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189831 8srd:D (2.91) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189832 8sre:A (2.52) BS02 MG ? GO:0005216 ... F2UB89 N/A
    189833 8sre:A (2.52) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189834 8sre:A (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189835 8sre:A (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189836 8sre:B (2.52) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189837 8sre:B (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189838 8sre:B (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189839 8sre:B (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189840 8sre:C (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189841 8sre:C (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189842 8sre:C (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189843 8sre:C (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    189844 8sre:D (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189845 8sre:D (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189846 8sre:D (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189847 8sre:D (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189848 8srf:A (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189849 8srf:A (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189850 8srf:A (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189851 8srf:A (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189852 8srf:B (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189853 8srf:B (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189854 8srf:B (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189855 8srf:B (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    189856 8srf:C (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189857 8srf:C (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189858 8srf:C (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189859 8srf:C (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    189860 8srf:D (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189861 8srf:D (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    189862 8srf:D (2.52) BS09 MG ? GO:0005216 ... F2UB89 N/A
    189863 8srf:D (2.52) BS10 MG ? GO:0005216 ... F2UB89 N/A
    189864 8srg:A (3.03) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189865 8srg:A (3.03) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189866 8srg:A (3.03) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189867 8srg:B (3.03) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189868 8srg:B (3.03) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189869 8srg:B (3.03) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189870 8srg:C (3.03) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189871 8srg:C (3.03) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189872 8srg:C (3.03) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189873 8srg:D (3.03) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189874 8srg:D (3.03) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189875 8srg:D (3.03) BS08 MG ? GO:0005216 ... F2UB89 N/A
    189876 8srh:A (3.79) BS02 MG ? GO:0005216 ... F2UB89 N/A
    189877 8srh:B (3.79) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189878 8srh:C (3.79) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189879 8srh:D (3.79) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189880 8sri:A (2.73) BS02 MG ? GO:0005216 ... F2UB89 N/A
    189881 8sri:A (2.73) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189882 8sri:A (2.73) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189883 8sri:B (2.73) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189884 8sri:B (2.73) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189885 8sri:B (2.73) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189886 8sri:C (2.73) BS03 MG ? GO:0005216 ... F2UB89 N/A
    189887 8sri:C (2.73) BS04 MG ? GO:0005216 ... F2UB89 N/A
    189888 8sri:C (2.73) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189889 8sri:D (2.73) BS05 MG ? GO:0005216 ... F2UB89 N/A
    189890 8sri:D (2.73) BS06 MG ? GO:0005216 ... F2UB89 N/A
    189891 8sri:D (2.73) BS07 MG ? GO:0005216 ... F2UB89 N/A
    189892 8srk:A (4.14) BS02 CA ? GO:0005216 ... F2UB89 N/A
    189893 8srk:B (4.14) BS03 CA ? GO:0005216 ... F2UB89 N/A
    189894 8srk:C (4.14) BS03 CA ? GO:0005216 ... F2UB89 N/A
    189895 8srk:D (4.14) BS05 CA ? GO:0005216 ... F2UB89 N/A
    189896 8srl:A (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 N/A
    189897 8srl:B (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 N/A
    189898 8srl:C (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 N/A
    189899 8srl:D (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 N/A
    189900 8srs:A (2.79) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    189901 8srs:A (2.79) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    189902 8srx:A (2.09) BS02 ZN ? GO:0042981 ... Q16611 38088212
    189903 8ssk:A (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    189904 8ssk:B (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    189905 8ssk:C (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    189906 8ssk:D (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    189907 8ssl:A (4.6) BS02 MG 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    189908 8ssq:A (3.12) BS03 ZN ? N/A P49711 37439339
    189909 8ssq:A (3.12) BS04 ZN ? N/A P49711 37439339
    189910 8ssq:A (3.12) BS05 ZN ? N/A P49711 37439339
    189911 8ssq:A (3.12) BS06 ZN ? N/A P49711 37439339
    189912 8ssq:A (3.12) BS07 ZN ? N/A P49711 37439339
    189913 8ssq:A (3.12) BS08 ZN ? N/A P49711 37439339
    189914 8ssq:A (3.12) BS09 ZN ? N/A P49711 37439339
    189915 8ssq:A (3.12) BS10 ZN ? N/A P49711 37439339
    189916 8ssq:A (3.12) BS11 ZN ? N/A P49711 37439339
    189917 8ssq:D (3.12) BS03 ZN ? N/A P49711 37439339
    189918 8ssq:D (3.12) BS04 ZN ? N/A P49711 37439339
    189919 8ssq:D (3.12) BS05 ZN ? N/A P49711 37439339
    189920 8ssq:D (3.12) BS06 ZN ? N/A P49711 37439339
    189921 8ssq:D (3.12) BS07 ZN ? N/A P49711 37439339
    189922 8ssq:D (3.12) BS08 ZN ? N/A P49711 37439339
    189923 8ssq:D (3.12) BS09 ZN ? N/A P49711 37439339
    189924 8ssq:D (3.12) BS10 ZN ? N/A P49711 37439339
    189925 8ssr:A (3.14) BS03 ZN ? N/A P49711 37439339
    189926 8ssr:A (3.14) BS04 ZN ? N/A P49711 37439339
    189927 8ssr:A (3.14) BS05 ZN ? N/A P49711 37439339
    189928 8ssr:A (3.14) BS06 ZN ? N/A P49711 37439339
    189929 8ssr:A (3.14) BS07 ZN ? N/A P49711 37439339
    189930 8ssr:A (3.14) BS08 ZN ? N/A P49711 37439339
    189931 8ssr:A (3.14) BS09 ZN ? N/A P49711 37439339
    189932 8ssr:A (3.14) BS10 ZN ? N/A P49711 37439339
    189933 8ssr:A (3.14) BS11 ZN ? N/A P49711 37439339
    189934 8ssr:D (3.14) BS03 ZN ? N/A P49711 37439339
    189935 8ssr:D (3.14) BS04 ZN ? N/A P49711 37439339
    189936 8ssr:D (3.14) BS05 ZN ? N/A P49711 37439339
    189937 8ssr:D (3.14) BS06 ZN ? N/A P49711 37439339
    189938 8ssr:D (3.14) BS07 ZN ? N/A P49711 37439339
    189939 8ssr:D (3.14) BS08 ZN ? N/A P49711 37439339
    189940 8ssr:D (3.14) BS09 ZN ? N/A P49711 37439339
    189941 8ssr:D (3.14) BS10 ZN ? N/A P49711 37439339
    189942 8sss:A (2.3) BS03 ZN ? N/A P49711 37439339
    189943 8sss:A (2.3) BS04 ZN ? N/A P49711 37439339
    189944 8sss:A (2.3) BS05 ZN ? N/A P49711 37439339
    189945 8sss:A (2.3) BS06 ZN ? N/A P49711 37439339
    189946 8sss:A (2.3) BS07 ZN ? N/A P49711 37439339
    189947 8sss:A (2.3) BS08 ZN ? N/A P49711 37439339
    189948 8sss:A (2.3) BS09 ZN ? N/A P49711 37439339
    189949 8sss:D (2.3) BS03 ZN ? N/A P49711 37439339
    189950 8sss:D (2.3) BS04 ZN ? N/A P49711 37439339
    189951 8sss:D (2.3) BS05 ZN ? N/A P49711 37439339
    189952 8sss:D (2.3) BS06 ZN ? N/A P49711 37439339
    189953 8sss:D (2.3) BS07 ZN ? N/A P49711 37439339
    189954 8sss:D (2.3) BS08 ZN ? N/A P49711 37439339
    189955 8sss:D (2.3) BS09 ZN ? N/A P49711 37439339
    189956 8sst:A (2.19) BS03 ZN ? N/A P49711 37439339
    189957 8sst:A (2.19) BS04 ZN ? N/A P49711 37439339
    189958 8sst:A (2.19) BS05 ZN ? N/A P49711 37439339
    189959 8sst:A (2.19) BS06 ZN ? N/A P49711 37439339
    189960 8sst:A (2.19) BS07 ZN ? N/A P49711 37439339
    189961 8sst:A (2.19) BS08 ZN ? N/A P49711 37439339
    189962 8sst:A (2.19) BS09 ZN ? N/A P49711 37439339
    189963 8sst:D (2.19) BS03 ZN ? N/A P49711 37439339
    189964 8sst:D (2.19) BS04 ZN ? N/A P49711 37439339
    189965 8sst:D (2.19) BS05 ZN ? N/A P49711 37439339
    189966 8sst:D (2.19) BS06 ZN ? N/A P49711 37439339
    189967 8sst:D (2.19) BS07 ZN ? N/A P49711 37439339
    189968 8sst:D (2.19) BS08 ZN ? N/A P49711 37439339
    189969 8sst:D (2.19) BS09 ZN ? N/A P49711 37439339
    189970 8ssu:A (2.89) BS03 ZN ? N/A P49711
    Q86U70    		 37439339
    189971 8ssu:A (2.89) BS04 ZN ? N/A P49711
    Q86U70    		 37439339
    189972 8ssu:A (2.89) BS05 ZN ? N/A P49711
    Q86U70    		 37439339
    189973 8ssu:A (2.89) BS06 ZN ? N/A P49711
    Q86U70    		 37439339
    189974 8ssu:A (2.89) BS07 ZN ? N/A P49711
    Q86U70    		 37439339
    189975 8ssu:A (2.89) BS08 ZN ? N/A P49711
    Q86U70    		 37439339
    189976 8ssu:A (2.89) BS09 ZN ? N/A P49711
    Q86U70    		 37439339
    189977 8ssu:A (2.89) BS10 ZN ? N/A P49711
    Q86U70    		 37439339
    189978 8ssz:A (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    189979 8ssz:D (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    189980 8st1:A (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    189981 8st1:D (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    189982 8st3:A (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    189983 8st3:D (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    189984 8stc:D (2.8) BS01 MG N/A GO:0005886 ... F9UST0 N/A
    189985 8std:A (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    189986 8std:B (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    189987 8std:D (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    189988 8stq:A (2.955) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189989 8stq:A (2.955) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189990 8sts:A (3.02) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189991 8sts:C (3.02) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189992 8stt:A (2.62) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189993 8stt:C (2.62) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189994 8stu:A (2.76) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189995 8stv:C (2.78) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    189996 8su1:A (1.37) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    189997 8su2:A (1.33) BS02 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    189998 8su3:A (1.29) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    189999 8su4:A (1.43) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    190000 8su5:A (1.48) BS02 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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