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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    187601 8pw5:a (3.6) BS04 MG 7.1.1.9 GO:0001666 ... P00397 38575788
    187602 8pw5:f (3.6) BS01 ZN ? GO:0005739 ... P19536 38575788
    187603 8pw5:n (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    187604 8pw5:n (3.6) BS04 MG 7.1.1.9 GO:0001666 ... P00397 38575788
    187605 8pw5:o (3.6) BS02 MG 7.1.1.9 GO:0001666 ... P00405 38575788
    187606 8pw5:s (3.6) BS01 ZN ? GO:0005739 ... P19536 38575788
    187607 8pw6:7 (3.3) BS01 ZN ? GO:0001822 ... P52503 38575788
    187608 8pw6:n (3.3) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    187609 8pw6:s (3.3) BS01 ZN ? GO:0005739 ... P19536 38575788
    187610 8pw7:7 (3.5) BS01 ZN ? GO:0001822 ... P52503 38575788
    187611 8pw7:n (3.5) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    187612 8pw7:s (3.5) BS01 ZN ? GO:0005739 ... P19536 38575788
    187613 8pwa:B (2.1) BS01 MG ? N/A Q9HCE5 38470714
    187614 8px9:A (2.8) BS01 MG ? GO:0005524 ... Q9X2W0 37828292
    187615 8px9:B (2.8) BS03 MG ? GO:0005524 ... Q9X2W0 37828292
    187616 8pxc:A (1.973) BS01 CA ? N/A F2QF16 37828292
    187617 8pxc:A (1.973) BS02 CA ? N/A F2QF16 37828292
    187618 8py3:A (1.65) BS01 ZN N/A N/A Q8IXJ6 38847803
    187619 8py5:A (1.85) BS02 FE N/A N/A P05326 N/A
    187620 8py6:A (1.52) BS01 FE N/A N/A P05326 N/A
    187621 8py7:A (1.49) BS03 FE N/A N/A P05326 N/A
    187622 8py8:A (1.46) BS04 FE N/A N/A P05326 N/A
    187623 8py9:A (1.5) BS03 FE N/A N/A P05326 N/A
    187624 8pya:A (1.5) BS03 FE N/A N/A P05326 N/A
    187625 8pz4:A (1.77) BS01 CA ? GO:0009279 ... P18895 37828292
    187626 8pz4:A (1.77) BS02 CA ? GO:0009279 ... P18895 37828292
    187627 8pzh:A (2.02) BS01 MN ? N/A F9UT68 N/A
    187628 8pzm:A (1.7) BS03 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187629 8pzm:A (1.7) BS04 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187630 8pzu:B (3.5) BS01 MG N/A N/A P77774 39218969
    187631 8pzv:B (2.9) BS01 MG N/A N/A P77774 39218969
    187632 8pzy:A (1.97) BS02 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187633 8pzy:A (1.97) BS03 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187634 8pzy:B (1.97) BS02 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187635 8pzy:B (1.97) BS03 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187636 8pzy:C (1.97) BS02 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187637 8pzy:C (1.97) BS03 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187638 8pzy:D (1.97) BS02 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187639 8pzy:D (1.97) BS03 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187640 8pzy:E (1.97) BS02 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187641 8pzy:E (1.97) BS03 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187642 8pzy:F (1.97) BS03 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187643 8pzy:F (1.97) BS04 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    187644 8q01:S (3.58) BS01 ZN N/A N/A A1YTN7 N/A
    187645 8q0a:M (3.1) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187646 8q0a:R (3.1) BS01 ZN ? GO:0005739 ... P23934 38870289
    187647 8q0c:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38358125
    187648 8q0f:M (3.1) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187649 8q0f:R (3.1) BS01 ZN ? GO:0005739 ... P23934 38870289
    187650 8q0j:R (3.8) BS01 ZN ? GO:0005739 ... P23934 38870289
    187651 8q0m:M (3.1) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187652 8q0m:R (3.1) BS01 ZN ? GO:0005739 ... P23934 38870289
    187653 8q0o:M (3.1) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187654 8q0o:R (3.1) BS01 ZN ? GO:0005739 ... P23934 38870289
    187655 8q0q:R (3.6) BS01 ZN ? GO:0005739 ... P23934 38870289
    187656 8q18:A (2.13) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187657 8q18:B (2.13) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187658 8q18:C (2.13) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187659 8q18:D (2.13) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187660 8q19:A (2.63) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187661 8q19:B (2.63) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187662 8q19:C (2.63) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187663 8q19:D (2.63) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187664 8q1a:A (2.35) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187665 8q1a:B (2.35) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187666 8q1a:C (2.35) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187667 8q1a:D (2.35) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37837260
    187668 8q1b:A (3.4) BS01 ZN 3.4.24.64 GO:0004222 ... Q9P7X1 37939086
    187669 8q1b:L (3.4) BS01 ZN 3.4.24.64 GO:0004222 ... Q9P7X1 37939086
    187670 8q1b:a (3.4) BS03 CU 7.1.1.9 GO:0004129 ... P07657 37939086
    187671 8q1b:a (3.4) BS04 CA 7.1.1.9 GO:0004129 ... P07657 37939086
    187672 8q1b:d (3.4) BS01 ZN ? GO:0004129 ... P79010 37939086
    187673 8q1c:A (1.679) BS01 MG N/A N/A A0A0A7T4I1 39068257
    187674 8q1c:B (1.679) BS01 MG N/A N/A A0A0A7T4I1 39068257
    187675 8q1d:A (1.75) BS02 MG N/A N/A P71447 39068257
    187676 8q1e:A (1.23) BS02 MG N/A N/A A0A0A7T4I1 39068257
    187677 8q1e:A (1.23) BS03 MG N/A N/A A0A0A7T4I1 39068257
    187678 8q1f:A (1.01) BS02 MG N/A N/A A0A0A7T4I1 39068257
    187679 8q1f:A (1.01) BS03 MG N/A N/A A0A0A7T4I1 39068257
    187680 8q1f:B (1.01) BS02 MG N/A N/A A0A0A7T4I1 39068257
    187681 8q1f:B (1.01) BS03 MG N/A N/A A0A0A7T4I1 39068257
    187682 8q1k:A (1.51) BS01 MN 3.1.16.1 GO:0003824 ... Q8IV08 37994783
    187683 8q1k:B (1.51) BS01 MN 3.1.16.1 GO:0003824 ... Q8IV08 37994783
    187684 8q1p:R (2.9) BS01 ZN ? GO:0005739 ... P23934 38870289
    187685 8q1u:R (3.3) BS01 ZN ? GO:0005739 ... P23934 38870289
    187686 8q1x:A (1.85) BS03 MG 3.1.16.1 GO:0003824 ... Q8IV08 37994783
    187687 8q1y:M (2.6) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187688 8q1y:R (2.6) BS01 ZN ? GO:0005739 ... P23934 38870289
    187689 8q25:M (2.8) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187690 8q25:R (2.8) BS01 ZN ? GO:0005739 ... P23934 38870289
    187691 8q26:A (1.9) BS03 MG N/A N/A P30419 N/A
    187692 8q28:A (1.8) BS01 CA ? N/A C5BSV8 38446458
    187693 8q28:A (1.8) BS02 MG ? N/A C5BSV8 38446458
    187694 8q28:B (1.8) BS01 CA ? N/A C5BSV8 38446458
    187695 8q28:B (1.8) BS02 MG ? N/A C5BSV8 38446458
    187696 8q29:A (1.5) BS01 CA ? N/A C5BSV8 38446458
    187697 8q29:A (1.5) BS02 MG ? N/A C5BSV8 38446458
    187698 8q29:B (1.5) BS01 CA ? N/A C5BSV8 38446458
    187699 8q29:B (1.5) BS02 MG ? N/A C5BSV8 38446458
    187700 8q2a:A (2.2) BS01 CA ? N/A C5BNC6 38446458
    187701 8q2a:B (2.2) BS01 CA ? N/A C5BNC6 38446458
    187702 8q2a:C (2.2) BS01 CA ? N/A C5BNC6 38446458
    187703 8q2e:C (1.68) BS02 NI 3.5.1.5 GO:0005737 ... P41020 37879152
    187704 8q2e:C (1.68) BS03 NI 3.5.1.5 GO:0005737 ... P41020 37879152
    187705 8q2n:A (2.98) BS04 MG N/A N/A G3ECR3 N/A
    187706 8q2n:D (2.98) BS05 MG N/A N/A G3ECR3 N/A
    187707 8q3b:A (2.69) BS01 ZN 2.7.7.6 GO:0000428 ... P42486 38383525
    187708 8q3b:A (2.69) BS02 ZN 2.7.7.6 GO:0000428 ... P42486 38383525
    187709 8q3b:A (2.69) BS03 MG 2.7.7.6 GO:0000428 ... P42486 38383525
    187710 8q3b:B (2.69) BS01 ZN 2.7.7.6 GO:0000428 ... P42487 38383525
    187711 8q3b:I (2.69) BS01 ZN ? GO:0044423 ... Q65157 38383525
    187712 8q3b:I (2.69) BS02 ZN ? GO:0044423 ... Q65157 38383525
    187713 8q3b:J (2.69) BS01 ZN ? GO:0000428 ... P42488 38383525
    187714 8q3i:D (3.11) BS01 ZN N/A N/A A0QS66 N/A
    187715 8q3i:D (3.11) BS02 ZN N/A N/A A0QS66 N/A
    187716 8q3i:D (3.11) BS03 MG N/A N/A A0QS66 N/A
    187717 8q3k:A (2.92) BS01 ZN 2.7.7.6 GO:0000428 ... P42486 38383525
    187718 8q3k:A (2.92) BS02 ZN 2.7.7.6 GO:0000428 ... P42486 38383525
    187719 8q3k:A (2.92) BS03 MG 2.7.7.6 GO:0000428 ... P42486 38383525
    187720 8q3k:B (2.92) BS01 ZN 2.7.7.6 GO:0000428 ... P42487 38383525
    187721 8q3k:I (2.92) BS01 ZN ? GO:0044423 ... Q65157 38383525
    187722 8q3k:I (2.92) BS02 ZN ? GO:0044423 ... Q65157 38383525
    187723 8q3k:J (2.92) BS01 ZN ? GO:0000428 ... P42488 38383525
    187724 8q3o:E (3.0) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 37645988
    187725 8q3u:A (1.1) BS01 ZN 4.2.1.1 GO:0004089 ... P43166 37678143
    187726 8q3v:B (2.08) BS01 MG N/A GO:0005886 ... Q59584 38530900
    187727 8q3v:R (2.08) BS02 MG N/A GO:0005886 ... Q59584 38530900
    187728 8q3v:b (2.08) BS01 MG N/A GO:0005886 ... Q59584 38530900
    187729 8q3w:D (3.18) BS02 MG N/A GO:0005524 ... Q45619 38926614
    187730 8q3w:G (3.18) BS01 MG N/A GO:0005524 ... Q45619 38926614
    187731 8q3z:A (3.15) BS02 MN ? GO:0003676 ... E8URK0 38033326
    187732 8q3z:B (3.15) BS02 MN ? GO:0003676 ... E8URK0 38033326
    187733 8q40:A (2.21) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187734 8q40:A (2.21) BS04 MN ? GO:0003676 ... E8URK0 38033326
    187735 8q40:B (2.21) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187736 8q40:B (2.21) BS04 MN ? GO:0003676 ... E8URK0 38033326
    187737 8q41:A (2.38) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187738 8q41:B (2.38) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187739 8q42:A (1.97) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187740 8q42:B (1.97) BS02 MN ? GO:0003676 ... E8URK0 38033326
    187741 8q43:A (2.28) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187742 8q43:A (2.28) BS04 MN ? GO:0003676 ... E8URK0 38033326
    187743 8q43:B (2.28) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187744 8q44:A (2.3) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187745 8q44:B (2.3) BS02 MN ? GO:0003676 ... E8URK0 38033326
    187746 8q44:B (2.3) BS03 MN ? GO:0003676 ... E8URK0 38033326
    187747 8q45:M (2.7) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187748 8q45:O (2.7) BS02 MG ? GO:0005737 ... P34942 38870289
    187749 8q45:R (2.7) BS01 ZN ? GO:0005739 ... P23934 38870289
    187750 8q46:R (2.6) BS01 ZN ? GO:0005739 ... P23934 38870289
    187751 8q47:R (2.9) BS01 ZN ? GO:0005739 ... P23934 38870289
    187752 8q48:M (2.5) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187753 8q48:R (2.5) BS01 ZN ? GO:0005739 ... P23934 38870289
    187754 8q49:M (2.6) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187755 8q49:R (2.6) BS01 ZN ? GO:0005739 ... P23934 38870289
    187756 8q4a:M (2.6) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    187757 8q4a:R (2.6) BS01 ZN ? GO:0005739 ... P23934 38870289
    187758 8q4d:A (3.62) BS06 MG N/A GO:0003677 ... Q45618 38926614
    187759 8q4d:B (3.62) BS06 MG N/A GO:0003677 ... Q45618 38926614
    187760 8q4d:F (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    187761 8q4d:I (3.62) BS02 MG N/A GO:0005524 ... Q45619 38926614
    187762 8q4d:J (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    187763 8q4d:M (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    187764 8q4d:P (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    187765 8q4d:S (3.62) BS02 MG N/A GO:0005524 ... Q45619 38926614
    187766 8q4d:T (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    187767 8q4d:W (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    187768 8q4s:A (2.08) BS02 MG N/A N/A Q8YI30 N/A
    187769 8q54:B (2.39) BS01 MG N/A N/A Q59584 N/A
    187770 8q54:R (2.39) BS01 MG N/A N/A Q59584 N/A
    187771 8q54:b (2.39) BS01 MG N/A N/A Q59584 N/A
    187772 8q57:A (1.7) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    187773 8q57:A (1.7) BS02 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    187774 8q57:B (1.7) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    187775 8q57:B (1.7) BS02 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    187776 8q58:A (1.7) BS01 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    187777 8q58:A (1.7) BS02 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    187778 8q59:A (2.0) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    187779 8q59:B (2.0) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    187780 8q5a:A (2.8) BS01 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    187781 8q5a:A (2.8) BS02 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    187782 8q5i:AH (2.45) BS02 MG ? GO:0003735 ... A0A8H6F171 N/A
    187783 8q5i:AK (2.45) BS04 ZN ? GO:0003723 ... A0A1D8PF45 N/A
    187784 8q5i:AN (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PL68 N/A
    187785 8q5i:AP (2.45) BS03 ZN ? GO:0003735 ... A0A8H6BR69 N/A
    187786 8q5i:AP (2.45) BS04 MG ? GO:0003735 ... A0A8H6BR69 N/A
    187787 8q5i:AQ (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PP14 N/A
    187788 8q5i:M (2.45) BS02 MG ? GO:0003735 ... A0A1D8PN83 N/A
    187789 8q5i:X (2.45) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    187790 8q5i:e (2.45) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    187791 8q5i:j (2.45) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    187792 8q5i:x (2.45) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    187793 8q5n:A (2.65) BS01 CA N/A N/A I4EG67 39041409
    187794 8q5n:B (2.65) BS01 CA N/A N/A I4EG67 39041409
    187795 8q5o:A (2.33) BS03 CA N/A N/A A0A0L6ZWS4 39041409
    187796 8q5o:B (2.33) BS03 CA N/A N/A A0A0L6ZWS4 39041409
    187797 8q5p:A (1.814) BS02 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    187798 8q5p:A (1.814) BS03 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    187799 8q5p:A (1.814) BS04 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    187800 8q5u:D (3.0) BS04 CA N/A GO:0004553 ... T1WGN1 38569940
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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