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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    187401 8pp5:F (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    187402 8pp6:K (3.18) BS01 ZN ? GO:0000122 ... Q8N488 38528151
    187403 8pp7:K (2.91) BS01 ZN ? GO:0000122 ... P35226 38528151
    187404 8pp7:K (2.91) BS02 ZN ? GO:0000122 ... P35226 38528151
    187405 8pp7:L (2.91) BS01 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    187406 8pp7:L (2.91) BS02 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    187407 8pp7:M (2.91) BS01 ZN ? GO:0000122 ... P35226 38528151
    187408 8pp7:M (2.91) BS02 ZN ? GO:0000122 ... P35226 38528151
    187409 8pp7:N (2.91) BS01 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    187410 8pp7:N (2.91) BS02 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    187411 8ppk:a (2.98) BS02 ZN ? GO:0002181 ... P62854 37802027
    187412 8ppk:d (2.98) BS02 ZN ? GO:0002181 ... P62273 37802027
    187413 8ppk:f (2.98) BS02 ZN ? GO:0002181 ... P62979 37802027
    187414 8ppl:AF (2.65) BS02 MG ? GO:0000028 ... P46782 37802027
    187415 8ppl:AS (2.65) BS02 MG ? GO:0002181 ... P62269 37802027
    187416 8ppl:AS (2.65) BS03 MG ? GO:0002181 ... P62269 37802027
    187417 8ppl:Aa (2.65) BS02 ZN ? GO:0002181 ... P62854 37802027
    187418 8ppl:Ad (2.65) BS02 ZN ? GO:0002181 ... P62273 37802027
    187419 8ppl:Af (2.65) BS02 ZN ? GO:0002181 ... P62979 37802027
    187420 8ppl:Is (2.65) BS03 ZN ? GO:0001701 ... P20042 37802027
    187421 8ppl:It (2.65) BS03 MG 3.6.5.3 GO:0000049 ... P41091 37802027
    187422 8pps:A (2.3) BS01 MG ? N/A Q9I580 N/A
    187423 8pps:B (2.3) BS01 MG ? N/A Q9I580 N/A
    187424 8ppt:A (2.9) BS02 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    187425 8ppt:A (2.9) BS03 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    187426 8ppt:B (2.9) BS02 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187427 8ppt:B (2.9) BS03 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187428 8ppt:B (2.9) BS04 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187429 8ppt:B (2.9) BS05 MG 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187430 8ppu:A (3.02) BS02 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    187431 8ppu:A (3.02) BS03 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    187432 8ppu:B (3.02) BS03 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187433 8ppu:B (3.02) BS04 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187434 8ppu:B (3.02) BS05 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187435 8ppu:B (3.02) BS06 MG 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187436 8ppv:A (3.02) BS02 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    187437 8ppv:A (3.02) BS03 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    187438 8ppv:B (3.02) BS02 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187439 8ppv:B (3.02) BS03 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187440 8ppv:B (3.02) BS04 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187441 8ppv:B (3.02) BS05 MG 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    187442 8pq7:A (2.1) BS01 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    187443 8pq7:A (2.1) BS02 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    187444 8pq7:C (2.1) BS01 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    187445 8pq7:C (2.1) BS02 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    187446 8pql:K (3.76) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38326650
    187447 8pql:K (3.76) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38326650
    187448 8pql:K (3.76) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38326650
    187449 8pqw:A (4.2) BS02 MG ? GO:0003723 ... Q14204 38547289
    187450 8pqw:A (4.2) BS04 MG ? GO:0003723 ... Q14204 38547289
    187451 8pqy:A (3.8) BS02 MG ? GO:0003723 ... Q14204 38547289
    187452 8pqy:A (3.8) BS04 MG ? GO:0003723 ... Q14204 38547289
    187453 8pr4:Y (3.5) BS01 ZN ? GO:0001725 ... A0A4X1TB62 38547289
    187454 8pr4:Y (3.5) BS02 ZN ? GO:0001725 ... A0A4X1TB62 38547289
    187455 8pr4:Y (3.5) BS03 ZN ? GO:0001725 ... A0A4X1TB62 38547289
    187456 8prk:A (1.85) BS01 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    187457 8prk:A (1.85) BS02 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    187458 8prk:A (1.85) BS03 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    187459 8prk:B (1.85) BS01 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    187460 8prk:B (1.85) BS02 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    187461 8prk:B (1.85) BS03 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    187462 8psn:A (2.73) BS02 ZN ? N/A A0A142I7Z3 38066000
    187463 8psn:B (2.73) BS03 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187464 8psn:B (2.73) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187465 8psn:C (2.73) BS02 ZN ? N/A A0A7G3S745 38066000
    187466 8psn:C (2.73) BS03 ZN ? N/A A0A7G3S745 38066000
    187467 8pso:A (2.4) BS03 ZN ? N/A A0A142I7Z3 38066000
    187468 8pso:B (2.4) BS03 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187469 8pso:B (2.4) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187470 8psq:A (2.65) BS03 ZN ? N/A A0A142I7Z3 38066000
    187471 8psq:B (2.65) BS02 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187472 8pss:A (2.83) BS03 ZN ? N/A A0A142I7Z3 38066000
    187473 8pss:B (2.83) BS02 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187474 8psu:A (3.18) BS02 ZN ? N/A A0A142I7Z3 38066000
    187475 8psx:A (2.96) BS02 ZN ? N/A A0A142I7Z3 38066000
    187476 8psx:B (2.96) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187477 8psx:B (2.96) BS05 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187478 8psx:C (2.96) BS03 ZN ? N/A A0A7G3S745 38066000
    187479 8psx:C (2.96) BS04 ZN ? N/A A0A7G3S745 38066000
    187480 8psz:A (2.42) BS03 ZN ? N/A A0A142I7Z3 38066000
    187481 8psz:B (2.42) BS05 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187482 8psz:B (2.42) BS06 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187483 8psz:C (2.42) BS04 ZN ? N/A A0A7G3S745 38066000
    187484 8psz:C (2.42) BS05 ZN ? N/A A0A7G3S745 38066000
    187485 8pt2:A (2.59) BS03 ZN ? N/A A0A142I7Z3 38066000
    187486 8pt2:C (2.59) BS02 ZN ? N/A A0A7G3S745 38066000
    187487 8pt2:C (2.59) BS03 ZN ? N/A A0A7G3S745 38066000
    187488 8pt6:A (3.03) BS02 ZN ? N/A A0A142I7Z3 38066000
    187489 8pt6:B (3.03) BS03 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187490 8pt6:B (3.03) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187491 8pt6:C (3.03) BS02 ZN ? N/A A0A7G3S745 38066000
    187492 8pt6:C (3.03) BS03 ZN ? N/A A0A7G3S745 38066000
    187493 8pt7:A (2.8) BS03 ZN ? N/A A0A142I7Z3 38066000
    187494 8pt7:B (2.8) BS02 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    187495 8ptg:B (2.9) BS04 MG 3.6.4.- GO:0003676 ... P0AG30 38622114
    187496 8pth:A (2.73) BS03 ZN ? N/A A0A142I7Z3 38066000
    187497 8ptj:A (2.86) BS03 ZN ? N/A A0A142I7Z3 38066000
    187498 8ptt:A (2.5) BS02 MG N/A GO:0000287 ... Q9UKK9 N/A
    187499 8ptt:B (2.5) BS03 MG N/A GO:0000287 ... Q9UKK9 N/A
    187500 8ptt:B (2.5) BS04 MG N/A GO:0000287 ... Q9UKK9 N/A
    187501 8ptt:C (2.5) BS02 MG N/A GO:0000287 ... Q9UKK9 N/A
    187502 8ptt:D (2.5) BS03 MG N/A GO:0000287 ... Q9UKK9 N/A
    187503 8ptv:A (1.6) BS01 FE N/A GO:0005737 ... P05326 N/A
    187504 8pu1:B (1.702) BS01 MG N/A GO:0015970 ... A0A3E3DY42 N/A
    187505 8pu4:C (2.62) BS02 MG N/A GO:0015970 ... A0A3E3DY42 N/A
    187506 8pv1:CH (2.56) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187507 8pv1:CQ (2.56) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187508 8pv1:Cb (2.56) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187509 8pv1:Cd (2.56) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187510 8pv1:Cd (2.56) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    187511 8pv1:Lg (2.56) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187512 8pv1:Lj (2.56) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187513 8pv1:Lp (2.56) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187514 8pv2:CH (2.63) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187515 8pv2:CQ (2.63) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187516 8pv2:Cb (2.63) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187517 8pv2:Cd (2.63) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187518 8pv2:Cd (2.63) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    187519 8pv2:Lg (2.63) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187520 8pv2:Lj (2.63) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187521 8pv2:Lp (2.63) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187522 8pv3:CH (2.8) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187523 8pv3:CQ (2.8) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187524 8pv3:Cb (2.8) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187525 8pv3:Cd (2.8) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    187526 8pv3:Cd (2.8) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187527 8pv3:Lg (2.8) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187528 8pv3:Lj (2.8) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187529 8pv3:Lp (2.8) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187530 8pv4:CH (2.9) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187531 8pv4:CQ (2.9) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187532 8pv4:Cb (2.9) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187533 8pv4:Cd (2.9) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187534 8pv4:Cd (2.9) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    187535 8pv4:Lg (2.9) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187536 8pv4:Lj (2.9) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187537 8pv4:Lp (2.9) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187538 8pv5:CH (2.86) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187539 8pv5:CQ (2.86) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187540 8pv5:Cb (2.86) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187541 8pv5:Cd (2.86) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187542 8pv5:Cd (2.86) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    187543 8pv5:Lg (2.86) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187544 8pv5:Lj (2.86) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187545 8pv5:Lp (2.86) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187546 8pv6:CH (2.94) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187547 8pv6:CQ (2.94) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187548 8pv6:Cb (2.94) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187549 8pv6:Cd (2.94) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187550 8pv6:Cd (2.94) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    187551 8pv6:Lg (2.94) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187552 8pv6:Lj (2.94) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187553 8pv6:Lp (2.94) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187554 8pv7:CH (2.12) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187555 8pv7:CQ (2.12) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187556 8pv7:Cb (2.12) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187557 8pv7:Cd (2.12) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187558 8pv7:Cd (2.12) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    187559 8pv7:Lg (2.12) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187560 8pv7:Lj (2.12) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187561 8pv7:Lp (2.12) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187562 8pv8:CH (2.91) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187563 8pv8:CQ (2.91) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187564 8pv8:Cb (2.91) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187565 8pv8:Cd (2.91) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187566 8pv8:Lg (2.91) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187567 8pv8:Lj (2.91) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187568 8pv8:Lp (2.91) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187569 8pva:3 (4.5) BS02 ZN ? GO:0002181 ... P0A7Q6 38011573
    187570 8pva:4 (4.5) BS02 ZN ? GO:0002181 ... P0A7M9 38011573
    187571 8pvc:A (2.6) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 38011573
    187572 8pvk:CH (2.55) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187573 8pvk:CQ (2.55) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187574 8pvk:Cb (2.55) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187575 8pvk:Cd (2.55) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187576 8pvk:Cd (2.55) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    187577 8pvk:Lg (2.55) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187578 8pvk:Lj (2.55) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187579 8pvk:Lp (2.55) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187580 8pvl:CH (2.19) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    187581 8pvl:CQ (2.19) BS02 ZN ? GO:0005730 ... G0S497 37921038
    187582 8pvl:Cb (2.19) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    187583 8pvl:Cd (2.19) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    187584 8pvl:Cd (2.19) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    187585 8pvl:Lg (2.19) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    187586 8pvl:Lj (2.19) BS03 ZN ? GO:0003723 ... G0S101 37921038
    187587 8pvl:Lp (2.19) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    187588 8pvm:A (1.38) BS08 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    187589 8pvm:B (1.38) BS09 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    187590 8pvs:A (1.68) BS02 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    187591 8pvs:A (1.68) BS03 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    187592 8pvs:B (1.68) BS02 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    187593 8pvs:B (1.68) BS03 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    187594 8pvv:A (2.81) BS03 MG ? GO:0003676 ... O28951 38197228
    187595 8pw0:A (2.2) BS02 MN ? GO:0003677 ... Q9RRF3 38652591
    187596 8pw0:A (2.2) BS03 MN ? GO:0003677 ... Q9RRF3 38652591
    187597 8pw0:A (2.2) BS04 MN ? GO:0003677 ... Q9RRF3 38652591
    187598 8pw0:A (2.2) BS05 MN ? GO:0003677 ... Q9RRF3 38652591
    187599 8pw5:7 (3.6) BS01 ZN ? GO:0001822 ... P52503 38575788
    187600 8pw5:a (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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