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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    184801 8jp8:F (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    184802 8jp8:G (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184803 8jp8:G (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184804 8jp8:G (3.39) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184805 8jp8:H (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184806 8jp8:H (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184807 8jp8:H (3.39) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184808 8jp9:A (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    184809 8jp9:A (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    184810 8jp9:B (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    184811 8jp9:B (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    184812 8jp9:C (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184813 8jp9:C (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184814 8jp9:C (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184815 8jp9:D (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184816 8jp9:D (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184817 8jp9:D (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184818 8jp9:E (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    184819 8jp9:E (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    184820 8jp9:F (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    184821 8jp9:F (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    184822 8jp9:G (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184823 8jp9:G (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184824 8jp9:G (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184825 8jp9:H (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184826 8jp9:H (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184827 8jp9:H (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184828 8jpb:Q (3.07) BS02 MG ? GO:0001508 ... P50148 37532940
    184829 8jpc:Q (3.07) BS02 MG ? GO:0001508 ... P50148 37532940
    184830 8jpe:Q (2.91) BS02 MG ? GO:0001508 ... P50148 37532940
    184831 8jpg:A (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    184832 8jpg:A (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    184833 8jpg:B (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    184834 8jpg:B (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    184835 8jpg:C (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184836 8jpg:C (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184837 8jpg:C (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184838 8jpg:D (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184839 8jpg:D (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184840 8jpg:D (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184841 8jpg:E (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    184842 8jpg:E (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    184843 8jpg:F (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    184844 8jpg:F (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    184845 8jpg:G (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184846 8jpg:G (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184847 8jpg:G (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184848 8jpg:H (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    184849 8jpg:H (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    184850 8jpg:H (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    184851 8jpx:A (2.9) BS04 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    184852 8jpx:A (2.9) BS05 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    184853 8jpx:B (2.9) BS04 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    184854 8jpx:B (2.9) BS05 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    184855 8jpy:A (-1.00) BS01 ZN N/A N/A Q01101 N/A
    184856 8jpy:A (-1.00) BS02 ZN N/A N/A Q01101 N/A
    184857 8jq1:A (-1.00) BS01 ZN N/A N/A Q01101 N/A
    184858 8jq1:A (-1.00) BS02 ZN N/A N/A Q01101 N/A
    184859 8jq3:A (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184860 8jq3:A (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184861 8jq3:B (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184862 8jq3:B (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184863 8jq3:C (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184864 8jq3:C (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184865 8jq3:D (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184866 8jq3:D (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184867 8jq4:A (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184868 8jq4:A (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184869 8jq4:B (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184870 8jq4:B (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184871 8jq4:C (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184872 8jq4:C (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184873 8jq4:D (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184874 8jq4:D (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184875 8jq5:A (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184876 8jq5:A (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184877 8jq5:B (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184878 8jq5:B (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184879 8jq5:C (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184880 8jq5:C (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184881 8jq5:D (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184882 8jq5:D (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184883 8jq6:A (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184884 8jq6:A (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184885 8jq6:B (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184886 8jq6:B (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184887 8jq6:C (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184888 8jq6:C (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184889 8jq6:D (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184890 8jq6:D (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    184891 8jqe:A (2.31) BS01 MN ? GO:0005975 ... G0J5L4 38141024
    184892 8jqe:B (2.31) BS01 MN ? GO:0005975 ... G0J5L4 38141024
    184893 8jqu:A (1.798) BS02 MG N/A N/A A0A109NYM0 N/A
    184894 8jr0:F (2.8) BS02 MG 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    184895 8jrn:B (2.6) BS01 ZN ? GO:0003677 ... P03126 38670961
    184896 8jrn:B (2.6) BS02 ZN ? GO:0003677 ... P03126 38670961
    184897 8jrn:D (2.6) BS01 ZN ? GO:0003677 ... P03126 38670961
    184898 8jrn:D (2.6) BS02 ZN ? GO:0003677 ... P03126 38670961
    184899 8jro:B (3.01) BS01 ZN ? GO:0003677 ... P03126 38670961
    184900 8jro:B (3.01) BS02 ZN ? GO:0003677 ... P03126 38670961
    184901 8jro:D (3.01) BS01 ZN ? GO:0003677 ... P03126 38670961
    184902 8jro:D (3.01) BS02 ZN ? GO:0003677 ... P03126 38670961
    184903 8jrp:B (3.58) BS01 ZN ? N/A P03126 38670961
    184904 8jrp:B (3.58) BS02 ZN ? N/A P03126 38670961
    184905 8jrp:D (3.58) BS01 ZN ? N/A P03126 38670961
    184906 8jrp:D (3.58) BS02 ZN ? N/A P03126 38670961
    184907 8jrq:B (4.15) BS01 ZN ? GO:0003677 ... P03126 38670961
    184908 8jrq:B (4.15) BS02 ZN ? GO:0003677 ... P03126 38670961
    184909 8jrq:D (4.15) BS01 ZN ? GO:0003677 ... P03126 38670961
    184910 8jrq:D (4.15) BS02 ZN ? GO:0003677 ... P03126 38670961
    184911 8jrr:B (4.35) BS01 ZN ? N/A P03126 38670961
    184912 8jrr:D (4.35) BS01 ZN ? N/A P03126 38670961
    184913 8jsi:A (2.9) BS03 ZN N/A N/A A0A0Q2M2Z1 N/A
    184914 8jsi:A (2.9) BS04 MG N/A N/A A0A0Q2M2Z1 N/A
    184915 8jsi:B (2.9) BS03 ZN N/A N/A A0A0Q2M2Z1 N/A
    184916 8jsi:B (2.9) BS04 MG N/A N/A A0A0Q2M2Z1 N/A
    184917 8jsl:A (2.95) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... A0A1C4HDB0 37699521
    184918 8jsm:A (3.3) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... A0A1C4HDB0 37699521
    184919 8jsn:A (3.4) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... A0A1C4HDB0 37699521
    184920 8jsz:A (1.83) BS01 ZN N/A N/A N/A 38965224
    184921 8jsz:B (1.83) BS01 ZN N/A N/A N/A 38965224
    184922 8jt1:A (2.0) BS04 ZN 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184923 8jt1:A (2.0) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184924 8jt1:A (2.0) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184925 8jt1:A (2.0) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184926 8jt1:A (2.0) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184927 8jt1:B (2.0) BS04 ZN 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184928 8jt1:B (2.0) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184929 8jt1:B (2.0) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184930 8jt1:B (2.0) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184931 8jt1:B (2.0) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    184932 8jt8:A (2.7) BS01 MG ? GO:0004930 ... P0ABE7
    P28223    		 38552625
    184933 8jud:A (1.5) BS02 CA 3.4.24.23 GO:0004222 ... P09237 37861435
    184934 8jud:A (1.5) BS03 CA 3.4.24.23 GO:0004222 ... P09237 37861435
    184935 8jud:A (1.5) BS04 ZN 3.4.24.23 GO:0004222 ... P09237 37861435
    184936 8jud:A (1.5) BS05 ZN 3.4.24.23 GO:0004222 ... P09237 37861435
    184937 8juf:A (1.39) BS02 CA 3.4.24.23 GO:0004222 ... P09237 37861435
    184938 8juf:A (1.39) BS03 CA 3.4.24.23 GO:0004222 ... P09237 37861435
    184939 8juf:A (1.39) BS04 ZN 3.4.24.23 GO:0004222 ... P09237 37861435
    184940 8juf:A (1.39) BS05 ZN 3.4.24.23 GO:0004222 ... P09237 37861435
    184941 8jug:A (1.3) BS02 CA 3.4.24.23 GO:0004222 ... P09237 37861435
    184942 8jug:A (1.3) BS03 CA 3.4.24.23 GO:0004222 ... P09237 37861435
    184943 8jug:A (1.3) BS04 ZN 3.4.24.23 GO:0004222 ... P09237 37861435
    184944 8jug:A (1.3) BS05 ZN 3.4.24.23 GO:0004222 ... P09237 37861435
    184945 8jul:A (2.92) BS01 ZN ? GO:0016020 ... Q9NXL6 37932444
    184946 8jul:B (2.92) BS01 ZN ? GO:0016020 ... Q9NXL6 37932444
    184947 8jun:A (2.38) BS01 ZN ? GO:0016020 ... Q9NXL6 37932444
    184948 8jun:B (2.38) BS01 ZN ? GO:0016020 ... Q9NXL6 37932444
    184949 8jut:A (4.2) BS07 CA N/A N/A P98158 38771880
    184950 8jut:A (4.2) BS08 CA N/A N/A P98158 38771880
    184951 8jut:A (4.2) BS09 CA N/A N/A P98158 38771880
    184952 8jut:A (4.2) BS10 CA N/A N/A P98158 38771880
    184953 8jut:A (4.2) BS11 CA N/A N/A P98158 38771880
    184954 8jut:A (4.2) BS12 CA N/A N/A P98158 38771880
    184955 8jut:A (4.2) BS13 CA N/A N/A P98158 38771880
    184956 8jut:A (4.2) BS14 CA N/A N/A P98158 38771880
    184957 8jut:A (4.2) BS15 CA N/A N/A P98158 38771880
    184958 8jut:A (4.2) BS16 CA N/A N/A P98158 38771880
    184959 8jut:A (4.2) BS17 CA N/A N/A P98158 38771880
    184960 8jut:A (4.2) BS18 CA N/A N/A P98158 38771880
    184961 8jut:A (4.2) BS19 CA N/A N/A P98158 38771880
    184962 8jut:A (4.2) BS20 CA N/A N/A P98158 38771880
    184963 8jut:A (4.2) BS21 CA N/A N/A P98158 38771880
    184964 8jut:A (4.2) BS22 CA N/A N/A P98158 38771880
    184965 8jut:A (4.2) BS23 CA N/A N/A P98158 38771880
    184966 8jut:A (4.2) BS24 CA N/A N/A P98158 38771880
    184967 8jut:A (4.2) BS25 CA N/A N/A P98158 38771880
    184968 8jut:A (4.2) BS26 CA N/A N/A P98158 38771880
    184969 8jut:A (4.2) BS27 CA N/A N/A P98158 38771880
    184970 8jut:A (4.2) BS28 CA N/A N/A P98158 38771880
    184971 8jut:A (4.2) BS29 CA N/A N/A P98158 38771880
    184972 8jut:A (4.2) BS30 CA N/A N/A P98158 38771880
    184973 8jut:A (4.2) BS31 CA N/A N/A P98158 38771880
    184974 8jut:A (4.2) BS32 CA N/A N/A P98158 38771880
    184975 8jut:A (4.2) BS33 CA N/A N/A P98158 38771880
    184976 8jut:A (4.2) BS34 CA N/A N/A P98158 38771880
    184977 8jut:A (4.2) BS35 CA N/A N/A P98158 38771880
    184978 8jut:A (4.2) BS36 CA N/A N/A P98158 38771880
    184979 8jut:A (4.2) BS37 CA N/A N/A P98158 38771880
    184980 8jut:A (4.2) BS38 CA N/A N/A P98158 38771880
    184981 8jut:A (4.2) BS39 CA N/A N/A P98158 38771880
    184982 8jut:A (4.2) BS40 CA N/A N/A P98158 38771880
    184983 8jut:A (4.2) BS41 CA N/A N/A P98158 38771880
    184984 8jut:A (4.2) BS42 CA N/A N/A P98158 38771880
    184985 8jut:A (4.2) BS43 CA N/A N/A P98158 38771880
    184986 8jut:A (4.2) BS44 CA N/A N/A P98158 38771880
    184987 8jut:A (4.2) BS45 CA N/A N/A P98158 38771880
    184988 8jut:A (4.2) BS46 CA N/A N/A P98158 38771880
    184989 8jut:A (4.2) BS47 CA N/A N/A P98158 38771880
    184990 8jut:A (4.2) BS48 CA N/A N/A P98158 38771880
    184991 8jut:A (4.2) BS49 CA N/A N/A P98158 38771880
    184992 8jut:A (4.2) BS50 CA N/A N/A P98158 38771880
    184993 8jut:B (4.2) BS08 CA N/A N/A P98158 38771880
    184994 8jut:B (4.2) BS09 CA N/A N/A P98158 38771880
    184995 8jut:B (4.2) BS10 CA N/A N/A P98158 38771880
    184996 8jut:B (4.2) BS11 CA N/A N/A P98158 38771880
    184997 8jut:B (4.2) BS12 CA N/A N/A P98158 38771880
    184998 8jut:B (4.2) BS13 CA N/A N/A P98158 38771880
    184999 8jut:B (4.2) BS14 CA N/A N/A P98158 38771880
    185000 8jut:B (4.2) BS15 CA N/A N/A P98158 38771880
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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