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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177801 8ekb:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 36546783
    177802 8ekb:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 36546783
    177803 8ekb:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 36546783
    177804 8ekb:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 36546783
    177805 8ekb:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 36546783
    177806 8ekb:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 36546783
    177807 8ekb:1N (2.7) BS02 MG ? GO:0003729 ... P60488 36546783
    177808 8ekb:1N (2.7) BS03 MG ? GO:0003729 ... P60488 36546783
    177809 8ekb:1N (2.7) BS04 MG ? GO:0003729 ... P60488 36546783
    177810 8ekb:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 36546783
    177811 8ekb:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 36546783
    177812 8ekb:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 36546783
    177813 8ekb:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 36546783
    177814 8ekb:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 36546783
    177815 8ekb:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 36546783
    177816 8ekb:1P (2.7) BS07 MG ? GO:0003735 ... Q5SHQ7 36546783
    177817 8ekb:1Q (2.7) BS03 MG ? GO:0000049 ... P60489 36546783
    177818 8ekb:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 36546783
    177819 8ekb:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 36546783
    177820 8ekb:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 36546783
    177821 8ekb:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 36546783
    177822 8ekb:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 36546783
    177823 8ekb:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 36546783
    177824 8ekb:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 36546783
    177825 8ekb:1T (2.7) BS03 MG ? GO:0003735 ... P60490 36546783
    177826 8ekb:1U (2.7) BS02 MG ? GO:0000027 ... P60491 36546783
    177827 8ekb:1U (2.7) BS03 MG ? GO:0000027 ... P60491 36546783
    177828 8ekb:1U (2.7) BS04 MG ? GO:0000027 ... P60491 36546783
    177829 8ekb:1U (2.7) BS05 MG ? GO:0000027 ... P60491 36546783
    177830 8ekb:1U (2.7) BS06 MG ? GO:0000027 ... P60491 36546783
    177831 8ekb:1U (2.7) BS07 MG ? GO:0000027 ... P60491 36546783
    177832 8ekb:1U (2.7) BS08 MG ? GO:0000027 ... P60491 36546783
    177833 8ekb:1V (2.7) BS02 MG ? GO:0003723 ... P60492 36546783
    177834 8ekb:1V (2.7) BS03 MG ? GO:0003723 ... P60492 36546783
    177835 8ekb:1V (2.7) BS04 MG ? GO:0003723 ... P60492 36546783
    177836 8ekb:1V (2.7) BS05 MG ? GO:0003723 ... P60492 36546783
    177837 8ekb:1V (2.7) BS06 MG ? GO:0003723 ... P60492 36546783
    177838 8ekb:1V (2.7) BS07 MG ? GO:0003723 ... P60492 36546783
    177839 8ekb:1V (2.7) BS08 MG ? GO:0003723 ... P60492 36546783
    177840 8ekb:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 36546783
    177841 8ekb:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 36546783
    177842 8ekb:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 36546783
    177843 8ekb:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 36546783
    177844 8ekb:1W (2.7) BS06 MG ? GO:0003735 ... Q5SHP3 36546783
    177845 8ekb:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 36546783
    177846 8ekb:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 36546783
    177847 8ekb:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 36546783
    177848 8ekb:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 36546783
    177849 8ekb:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 36546783
    177850 8ekb:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 36546783
    177851 8ekb:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 36546783
    177852 8ekb:1b (2.7) BS02 MG ? GO:0003735 ... P80371 36546783
    177853 8ekb:1k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    177854 8ekb:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    177855 8ekb:1m (2.7) BS04 MG ? GO:0000049 ... P80377 36546783
    177856 8ekb:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 36546783
    177857 8ekb:1t (2.7) BS02 MG ? GO:0003723 ... P80380 36546783
    177858 8ekb:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 36546783
    177859 8ekb:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 36546783
    177860 8ekb:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 36546783
    177861 8ekb:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 36546783
    177862 8ekb:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 36546783
    177863 8ekb:2D (2.7) BS03 MG ? GO:0002181 ... P60405 36546783
    177864 8ekb:2D (2.7) BS04 MG ? GO:0002181 ... P60405 36546783
    177865 8ekb:2D (2.7) BS05 MG ? GO:0002181 ... P60405 36546783
    177866 8ekb:2D (2.7) BS06 MG ? GO:0002181 ... P60405 36546783
    177867 8ekb:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 36546783
    177868 8ekb:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 36546783
    177869 8ekb:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 36546783
    177870 8ekb:2G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 36546783
    177871 8ekb:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 36546783
    177872 8ekb:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 36546783
    177873 8ekb:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 36546783
    177874 8ekb:2U (2.7) BS02 MG ? GO:0000027 ... P60491 36546783
    177875 8ekb:2V (2.7) BS02 MG ? GO:0003723 ... P60492 36546783
    177876 8ekb:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 36546783
    177877 8ekb:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 36546783
    177878 8ekb:2Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 36546783
    177879 8ekb:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 36546783
    177880 8ekb:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 36546783
    177881 8ekb:2k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    177882 8ekb:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    177883 8ekb:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 36546783
    177884 8ekb:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 36546783
    177885 8ekc:3 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 36546783
    177886 8ekc:8 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 36546783
    177887 8ekc:C (2.7) BS02 MG ? GO:0000027 ... P60422 36546783
    177888 8ekc:D (2.7) BS02 MG ? GO:0000027 ... P60438 36546783
    177889 8ekg:A (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    177890 8ekg:B (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    177891 8ekg:C (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    177892 8ekg:D (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    177893 8ekg:E (2.65) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    177894 8ekg:F (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    177895 8ekk:A (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177896 8ekk:A (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177897 8ekk:B (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177898 8ekk:B (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177899 8ekk:C (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177900 8ekk:C (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177901 8ekk:D (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177902 8ekk:D (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177903 8ekk:E (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177904 8ekk:E (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177905 8ekk:F (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177906 8ekk:F (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177907 8ekk:G (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177908 8ekk:G (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177909 8ekl:A (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177910 8ekl:A (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177911 8ekl:B (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177912 8ekl:B (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177913 8ekl:C (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177914 8ekl:C (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177915 8ekl:D (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177916 8ekl:D (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177917 8ekl:E (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177918 8ekl:E (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177919 8ekl:F (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177920 8ekl:F (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177921 8ekl:G (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177922 8ekl:G (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177923 8ekm:A (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177924 8ekm:A (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177925 8ekm:B (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177926 8ekm:B (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177927 8ekm:C (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177928 8ekm:C (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177929 8ekm:D (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177930 8ekm:D (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177931 8ekm:E (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177932 8ekm:E (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177933 8ekm:F (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177934 8ekm:F (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177935 8ekm:G (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177936 8ekm:G (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    177937 8ela:A (1.5) BS01 ZN 3.5.2.6 GO:0008800 ... Q9L5C7 36963495
    177938 8ela:B (1.5) BS01 ZN 3.5.2.6 GO:0008800 ... Q9L5C7 36963495
    177939 8elf:A (2.0) BS01 MG ? N/A Q6DYE4 37100288
    177940 8elf:B (2.0) BS01 MG ? N/A Q6DYE4 37100288
    177941 8elk:A (1.8) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177942 8elk:A (1.8) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177943 8elk:A (1.8) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177944 8elr:A (2.05) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177945 8elr:A (2.05) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177946 8els:A (2.267) BS02 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177947 8els:A (2.267) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177948 8elt:A (1.66) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177949 8elt:A (1.66) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177950 8elt:A (1.66) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177951 8elu:A (1.93) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177952 8elu:A (1.93) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177953 8elv:A (2.153) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177954 8elv:A (2.153) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177955 8elv:A (2.153) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177956 8elw:A (1.699) BS01 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177957 8elw:A (1.699) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177958 8elw:A (1.699) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177959 8elx:A (1.975) BS02 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177960 8elx:A (1.975) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177961 8ely:A (1.75) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177962 8ely:A (1.75) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177963 8ely:A (1.75) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177964 8elz:A (1.961) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177965 8elz:A (1.961) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177966 8em0:A (2.109) BS02 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    177967 8em0:A (2.109) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    177968 8em3:A (1.62) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    177969 8em4:A (2.83) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    177970 8em4:A (2.83) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    177971 8em4:A (2.83) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    177972 8em4:A (2.83) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    177973 8em4:A (2.83) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    177974 8em4:A (2.83) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    177975 8em4:A (2.83) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    177976 8em4:A (2.83) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    177977 8em4:A (2.83) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    177978 8em4:A (2.83) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    177979 8em4:A (2.83) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    177980 8em4:A (2.83) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    177981 8em4:A (2.83) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    177982 8em4:A (2.83) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    177983 8em4:A (2.83) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    177984 8em4:A (2.83) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    177985 8em4:A (2.83) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    177986 8em4:A (2.83) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    177987 8em4:A (2.83) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    177988 8em4:A (2.83) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    177989 8em4:A (2.83) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    177990 8em4:A (2.83) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    177991 8em4:A (2.83) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    177992 8em4:A (2.83) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    177993 8em4:A (2.83) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    177994 8em4:A (2.83) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    177995 8em4:A (2.83) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    177996 8em4:A (2.83) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    177997 8em4:A (2.83) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    177998 8em4:A (2.83) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    177999 8em4:A (2.83) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    178000 8em4:A (2.83) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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