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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175401 8cpt:U (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175402 8cpt:X (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175403 8cpt:Y (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175404 8cpt:e (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175405 8cpt:r (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175406 8cpu:1 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175407 8cpu:2 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175408 8cpu:4 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175409 8cpu:A (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175410 8cpu:B (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175411 8cpu:E (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175412 8cpu:F (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175413 8cpu:H (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175414 8cpu:I (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175415 8cpu:K (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175416 8cpu:O (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175417 8cpu:P (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175418 8cpu:S (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175419 8cpu:U (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175420 8cpu:X (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175421 8cpu:Y (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175422 8cpu:e (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175423 8cpu:r (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175424 8cpw:1 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175425 8cpw:2 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175426 8cpw:4 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175427 8cpw:A (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175428 8cpw:B (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175429 8cpw:E (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175430 8cpw:F (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175431 8cpw:H (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175432 8cpw:I (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175433 8cpw:K (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175434 8cpw:O (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175435 8cpw:P (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175436 8cpw:S (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175437 8cpw:U (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175438 8cpw:X (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175439 8cpw:Y (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175440 8cpw:e (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175441 8cpw:r (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175442 8cpx:1 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175443 8cpx:2 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175444 8cpx:4 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175445 8cpx:A (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175446 8cpx:B (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175447 8cpx:E (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175448 8cpx:F (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175449 8cpx:H (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175450 8cpx:I (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175451 8cpx:K (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175452 8cpx:O (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175453 8cpx:P (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175454 8cpx:S (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175455 8cpx:U (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175456 8cpx:X (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175457 8cpx:Y (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175458 8cpx:e (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175459 8cpx:r (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175460 8cq7:AB (3.2) BS02 MG N/A N/A A0A8H6BVY8 N/A
    175461 8cq7:AD (3.2) BS02 MG N/A N/A A0A1D8PM75 N/A
    175462 8cq7:AE (3.2) BS02 MG N/A N/A A0A8H6F1M1 N/A
    175463 8cq7:AF (3.2) BS02 MG N/A N/A O94008 N/A
    175464 8cq7:AF (3.2) BS03 MG N/A N/A O94008 N/A
    175465 8cq7:AG (3.2) BS02 MG N/A N/A A0A8H6BW57 N/A
    175466 8cq7:AG (3.2) BS03 MG N/A N/A A0A8H6BW57 N/A
    175467 8cq7:AH (3.2) BS02 MG N/A N/A A0A8H6F171 N/A
    175468 8cq7:AH (3.2) BS03 ZN N/A N/A A0A8H6F171 N/A
    175469 8cq7:AI (3.2) BS03 MG N/A N/A A0A8H6F6B7 N/A
    175470 8cq7:AJ (3.2) BS02 MG N/A N/A P47834 N/A
    175471 8cq7:AK (3.2) BS03 ZN N/A N/A A0A1D8PF45 N/A
    175472 8cq7:AM (3.2) BS03 MG N/A N/A Q96W55 N/A
    175473 8cq7:AN (3.2) BS02 ZN N/A N/A A0A1D8PL68 N/A
    175474 8cq7:AP (3.2) BS02 ZN N/A N/A A0A8H6BR69 N/A
    175475 8cq7:AP (3.2) BS03 MG N/A N/A A0A8H6BR69 N/A
    175476 8cq7:AQ (3.2) BS02 ZN N/A N/A A0A1D8PP14 N/A
    175477 8cq7:AW (3.2) BS02 MG N/A N/A A0A8H6F1X9 N/A
    175478 8cq7:AW (3.2) BS03 MG N/A N/A A0A8H6F1X9 N/A
    175479 8cq7:AZ (3.2) BS03 MG N/A N/A G1UAA6 N/A
    175480 8cq7:BB (3.2) BS03 MG N/A N/A A0A8H6BVN2 N/A
    175481 8cq7:BE (3.2) BS03 MG N/A N/A Q5AIB8 N/A
    175482 8cq7:BJ (3.2) BS02 MG N/A N/A A0A8H6BZ56 N/A
    175483 8cq7:BJ (3.2) BS03 MG N/A N/A A0A8H6BZ56 N/A
    175484 8cq7:BK (3.2) BS03 MG N/A N/A A0A8H6BUG0 N/A
    175485 8cq7:BQ (3.2) BS02 MG N/A N/A A0A8H6C444 N/A
    175486 8cq7:BS (3.2) BS03 MG N/A N/A A0A8H6F6A1 N/A
    175487 8cq7:BS (3.2) BS04 MG N/A N/A A0A8H6F6A1 N/A
    175488 8cq7:BV (3.2) BS02 MG N/A N/A A0A8H6BVY8 N/A
    175489 8cq7:BZ (3.2) BS02 MG N/A N/A O94008 N/A
    175490 8cq7:BZ (3.2) BS03 MG N/A N/A O94008 N/A
    175491 8cq7:BZ (3.2) BS04 MG N/A N/A O94008 N/A
    175492 8cq7:CA (3.2) BS02 MG N/A N/A A0A8H6BW57 N/A
    175493 8cq7:CE (3.2) BS03 ZN N/A N/A A0A1D8PF45 N/A
    175494 8cq7:CH (3.2) BS02 ZN N/A N/A A0A1D8PL68 N/A
    175495 8cq7:CJ (3.2) BS03 ZN N/A N/A A0A8H6BR69 N/A
    175496 8cq7:CK (3.2) BS02 ZN N/A N/A A0A1D8PP14 N/A
    175497 8cq7:CQ (3.2) BS02 MG N/A N/A A0A8H6BYS1 N/A
    175498 8cq7:CW (3.2) BS02 MG N/A N/A A0A8H6F1X2 N/A
    175499 8cq7:CY (3.2) BS02 MG N/A N/A A0A1D8PN83 N/A
    175500 8cq7:DB (3.2) BS02 MG N/A N/A A0A8H6F0V4 N/A
    175501 8cq7:DC (3.2) BS02 MG N/A N/A A0A1D8PK22 N/A
    175502 8cq7:DG (3.2) BS02 MG N/A N/A A0A8H6C5L4 N/A
    175503 8cq7:DG (3.2) BS03 MG N/A N/A A0A8H6C5L4 N/A
    175504 8cq7:DJ (3.2) BS02 MG N/A N/A A0A8H6F0N4 N/A
    175505 8cq7:DJ (3.2) BS03 MG N/A N/A A0A8H6F0N4 N/A
    175506 8cq7:DN (3.2) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    175507 8cq7:DQ (3.2) BS02 MG N/A N/A A0A1D8PTR4 N/A
    175508 8cq7:DQ (3.2) BS03 ZN N/A N/A A0A1D8PTR4 N/A
    175509 8cq7:DS (3.2) BS02 ZN N/A N/A Q5A109 N/A
    175510 8cq7:G (3.2) BS02 MG N/A N/A A0A1D8PCI6 N/A
    175511 8cq7:H (3.2) BS02 MG N/A N/A A0A8H6BS29 N/A
    175512 8cq7:I (3.2) BS02 MG N/A N/A A0A8H6BZ37 N/A
    175513 8cq7:J (3.2) BS02 MG N/A N/A A0A8H6C655 N/A
    175514 8cq7:K (3.2) BS03 MG N/A N/A A0A8H6F0S0 N/A
    175515 8cq7:P0 (3.2) BS02 MG N/A N/A G1UA71 N/A
    175516 8cq7:Q (3.2) BS02 MG N/A N/A A0A8H6F0V4 N/A
    175517 8cq7:R (3.2) BS03 MG N/A N/A A0A1D8PK22 N/A
    175518 8cq7:Y (3.2) BS02 MG N/A N/A A0A8H6F0N4 N/A
    175519 8cq7:Z (3.2) BS02 MG N/A N/A A0A8H6F0V0 N/A
    175520 8cq7:c (3.2) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    175521 8cq7:c (3.2) BS03 MG N/A N/A A0A8H6BTS1 N/A
    175522 8cq7:f (3.2) BS02 ZN N/A N/A A0A1D8PTR4 N/A
    175523 8cq7:i (3.2) BS03 MG N/A N/A A0A1D8PK71 N/A
    175524 8cq7:j (3.2) BS03 MG N/A N/A A0A8H6F1X9 N/A
    175525 8cq7:j (3.2) BS04 MG N/A N/A A0A8H6F1X9 N/A
    175526 8cq7:k (3.2) BS02 MG N/A N/A Q59LS1 N/A
    175527 8cq7:k (3.2) BS03 MG N/A N/A Q59LS1 N/A
    175528 8cq7:k (3.2) BS04 MG N/A N/A Q59LS1 N/A
    175529 8cq7:k (3.2) BS05 MG N/A N/A Q59LS1 N/A
    175530 8cq7:k (3.2) BS06 MG N/A N/A Q59LS1 N/A
    175531 8cq7:r (3.2) BS03 MG N/A N/A Q5AIB8 N/A
    175532 8cq7:v (3.2) BS03 MG N/A N/A Q5A6R1 N/A
    175533 8cq7:v (3.2) BS04 MG N/A N/A Q5A6R1 N/A
    175534 8cq7:v (3.2) BS05 MG N/A N/A Q5A6R1 N/A
    175535 8cq7:w (3.2) BS02 MG N/A N/A A0A8H6BZ56 N/A
    175536 8cq7:x (3.2) BS03 MG N/A N/A A0A8H6BUG0 N/A
    175537 8cq7:x (3.2) BS04 MG N/A N/A A0A8H6BUG0 N/A
    175538 8cq7:y (3.2) BS02 MG N/A N/A A0A8H6C4Y1 N/A
    175539 8cq7:y (3.2) BS03 MG N/A N/A A0A8H6C4Y1 N/A
    175540 8cq7:y (3.2) BS04 MG N/A N/A A0A8H6C4Y1 N/A
    175541 8cq7:z (3.2) BS03 MG N/A N/A A0A1D8PK40 N/A
    175542 8cqb:A (3.7) BS03 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 N/A
    175543 8cqb:B (3.7) BS03 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 N/A
    175544 8cqf:A (2.05) BS09 CA 3.2.1.1 GO:0003824 ... P29957 37379391
    175545 8cqg:A (1.74) BS01 CA 3.2.1.1 GO:0003824 ... P29957 37379391
    175546 8cqm:A (2.0) BS01 ZN 3.1.4.3 GO:0004629 ... P33378 37838694
    175547 8cqm:A (2.0) BS02 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    175548 8cqm:A (2.0) BS03 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    175549 8cqm:B (2.0) BS01 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    175550 8cqm:B (2.0) BS02 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    175551 8cqp:C (1.7) BS01 CA N/A GO:0006396 ... N/A 38591647
    175552 8cqq:A (2.6) BS01 CU N/A GO:0006396 ... N/A 38591647
    175553 8cqw:2 (3.05) BS03 MG N/A N/A A0A8H6F1C8 N/A
    175554 8cqw:AB (3.05) BS02 MG N/A N/A A0A8H6BVY8 N/A
    175555 8cqw:AE (3.05) BS02 MG N/A N/A A0A8H6F1M1 N/A
    175556 8cqw:AF (3.05) BS02 MG N/A N/A O94008 N/A
    175557 8cqw:AG (3.05) BS02 MG N/A N/A A0A8H6BW57 N/A
    175558 8cqw:AG (3.05) BS03 MG N/A N/A A0A8H6BW57 N/A
    175559 8cqw:AH (3.05) BS02 ZN N/A N/A A0A8H6F171 N/A
    175560 8cqw:AH (3.05) BS03 MG N/A N/A A0A8H6F171 N/A
    175561 8cqw:AK (3.05) BS03 ZN N/A N/A A0A1D8PF45 N/A
    175562 8cqw:AM (3.05) BS03 MG N/A N/A Q96W55 N/A
    175563 8cqw:AN (3.05) BS02 ZN N/A N/A A0A1D8PL68 N/A
    175564 8cqw:AP (3.05) BS03 ZN N/A N/A A0A8H6BR69 N/A
    175565 8cqw:AP (3.05) BS04 MG N/A N/A A0A8H6BR69 N/A
    175566 8cqw:AQ (3.05) BS02 ZN N/A N/A A0A1D8PP14 N/A
    175567 8cqw:AR (3.05) BS02 MG N/A N/A A0A8H6C3E7 N/A
    175568 8cqw:AW (3.05) BS02 MG N/A N/A A0A8H6F1X9 N/A
    175569 8cqw:AW (3.05) BS03 MG N/A N/A A0A8H6F1X9 N/A
    175570 8cqw:AZ (3.05) BS03 MG N/A N/A G1UAA6 N/A
    175571 8cqw:BE (3.05) BS03 MG N/A N/A Q5AIB8 N/A
    175572 8cqw:BJ (3.05) BS02 MG N/A N/A A0A8H6BZ56 N/A
    175573 8cqw:BQ (3.05) BS02 MG N/A N/A A0A8H6C444 N/A
    175574 8cqw:BV (3.05) BS02 MG N/A N/A A0A8H6BVY8 N/A
    175575 8cqw:BZ (3.05) BS02 MG N/A N/A O94008 N/A
    175576 8cqw:BZ (3.05) BS03 MG N/A N/A O94008 N/A
    175577 8cqw:CE (3.05) BS03 ZN N/A N/A A0A1D8PF45 N/A
    175578 8cqw:CH (3.05) BS02 ZN N/A N/A A0A1D8PL68 N/A
    175579 8cqw:CJ (3.05) BS03 ZN N/A N/A A0A8H6BR69 N/A
    175580 8cqw:CK (3.05) BS02 ZN N/A N/A A0A1D8PP14 N/A
    175581 8cqw:DB (3.05) BS02 MG N/A N/A A0A8H6F0V4 N/A
    175582 8cqw:DC (3.05) BS02 MG N/A N/A A0A1D8PK22 N/A
    175583 8cqw:DG (3.05) BS02 MG N/A N/A A0A8H6C5L4 N/A
    175584 8cqw:DN (3.05) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    175585 8cqw:DQ (3.05) BS02 ZN N/A N/A A0A1D8PTR4 N/A
    175586 8cqw:DS (3.05) BS02 ZN N/A N/A Q5A109 N/A
    175587 8cqw:E (3.05) BS02 MG N/A N/A A0A8H6BZ90 N/A
    175588 8cqw:G (3.05) BS02 MG N/A N/A A0A1D8PCI6 N/A
    175589 8cqw:H (3.05) BS02 MG N/A N/A A0A8H6BS29 N/A
    175590 8cqw:J (3.05) BS02 MG N/A N/A A0A8H6C655 N/A
    175591 8cqw:K (3.05) BS03 MG N/A N/A A0A8H6F0S0 N/A
    175592 8cqw:Q (3.05) BS02 MG N/A N/A A0A8H6F0V4 N/A
    175593 8cqw:R (3.05) BS03 MG N/A N/A A0A1D8PK22 N/A
    175594 8cqw:Y (3.05) BS02 MG N/A N/A A0A8H6F0N4 N/A
    175595 8cqw:Z (3.05) BS02 MG N/A N/A A0A8H6F0V0 N/A
    175596 8cqw:c (3.05) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    175597 8cqw:f (3.05) BS02 ZN N/A N/A A0A1D8PTR4 N/A
    175598 8cqw:i (3.05) BS03 MG N/A N/A A0A1D8PK71 N/A
    175599 8cqw:j (3.05) BS03 MG N/A N/A A0A8H6F1X9 N/A
    175600 8cqw:k (3.05) BS02 MG N/A N/A Q59LS1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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