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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172801 8ad2:C (2.0) BS01 ZN ? GO:0046872 ... Q94EW1 N/A
    172802 8ad2:D (2.0) BS01 ZN ? GO:0046872 ... Q94EW1 N/A
    172803 8ad2:F (2.0) BS01 ZN ? GO:0046872 ... Q94EW1 N/A
    172804 8ad2:F (2.0) BS02 ZN ? GO:0046872 ... Q94EW1 N/A
    172805 8ad2:G (2.0) BS01 ZN ? GO:0046872 ... Q94EW1 N/A
    172806 8ad3:A (1.55) BS02 MG 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    172807 8ad4:A (1.5) BS04 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    172808 8ad4:A (1.5) BS05 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    172809 8ad4:B (1.5) BS05 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    172810 8ad4:B (1.5) BS06 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    172811 8ad5:A (1.65) BS02 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    172812 8ad5:B (1.65) BS02 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    172813 8adh:A (2.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    172814 8adh:A (2.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    172815 8adl:A (2.95) BS01 ZN ? GO:0000324 ... Q08281 36289347
    172816 8adl:A (2.95) BS02 ZN ? GO:0000324 ... Q08281 36289347
    172817 8adl:A (2.95) BS03 ZN ? GO:0000324 ... Q08281 36289347
    172818 8adl:B (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    172819 8adl:B (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    172820 8adl:B (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    172821 8adl:B (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    172822 8adl:C (2.95) BS01 ZN ? GO:0000329 ... Q03897 36289347
    172823 8adl:C (2.95) BS02 ZN ? GO:0000329 ... Q03897 36289347
    172824 8adl:C (2.95) BS03 ZN ? GO:0000329 ... Q03897 36289347
    172825 8adl:G (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    172826 8adl:G (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    172827 8adl:G (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    172828 8adl:G (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    172829 8adl:I (2.95) BS01 ZN ? GO:0000324 ... Q08281 36289347
    172830 8adl:I (2.95) BS02 ZN ? GO:0000324 ... Q08281 36289347
    172831 8adl:I (2.95) BS03 ZN ? GO:0000324 ... Q08281 36289347
    172832 8adl:J (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    172833 8adl:J (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    172834 8adl:J (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    172835 8adl:J (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    172836 8adl:O (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    172837 8adl:O (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    172838 8adl:O (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    172839 8adl:O (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    172840 8adl:Q (2.95) BS01 ZN ? GO:0000329 ... Q03897 36289347
    172841 8adl:Q (2.95) BS02 ZN ? GO:0000329 ... Q03897 36289347
    172842 8adl:Q (2.95) BS03 ZN ? GO:0000329 ... Q03897 36289347
    172843 8adq:A (1.6) BS04 MG ? GO:0003824 ... A0A9J9HGY6 36214476
    172844 8ae1:A (3.25) BS01 CA ? N/A Q9RRB6 35943982
    172845 8ae1:A (3.25) BS02 CA ? N/A Q9RRB6 35943982
    172846 8ae1:A (3.25) BS03 CA ? N/A Q9RRB6 35943982
    172847 8ae1:A (3.25) BS04 CA ? N/A Q9RRB6 35943982
    172848 8ae1:A (3.25) BS05 CA ? N/A Q9RRB6 35943982
    172849 8ae1:A (3.25) BS06 CA ? N/A Q9RRB6 35943982
    172850 8ae1:B (3.25) BS01 CA ? N/A Q9RRB6 35943982
    172851 8ae1:B (3.25) BS02 CA ? N/A Q9RRB6 35943982
    172852 8ae1:B (3.25) BS03 CA ? N/A Q9RRB6 35943982
    172853 8ae1:B (3.25) BS04 CA ? N/A Q9RRB6 35943982
    172854 8ae1:B (3.25) BS05 CA ? N/A Q9RRB6 35943982
    172855 8ae1:B (3.25) BS06 CA ? N/A Q9RRB6 35943982
    172856 8ae1:C (3.25) BS01 CA ? N/A Q9RRB6 35943982
    172857 8ae1:C (3.25) BS02 CA ? N/A Q9RRB6 35943982
    172858 8ae1:C (3.25) BS03 CA ? N/A Q9RRB6 35943982
    172859 8ae1:C (3.25) BS04 CA ? N/A Q9RRB6 35943982
    172860 8ae1:C (3.25) BS05 CA ? N/A Q9RRB6 35943982
    172861 8ae1:C (3.25) BS06 CA ? N/A Q9RRB6 35943982
    172862 8ae7:A (1.28) BS03 MG 2.7.11.1 GO:0004672 ... P68400 36426237
    172863 8aeh:AA1 (3.0) BS01 CA ? GO:0005576 ... O18873 N/A
    172864 8ael:A (2.2) BS02 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    172865 8ael:A (2.2) BS03 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    172866 8ael:A (2.2) BS04 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    172867 8ael:A (2.2) BS05 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    172868 8aen:A (3.01) BS02 ZN 3.1.1.7 GO:0001507 ... P22303 36193860
    172869 8aen:B (3.01) BS03 ZN 3.1.1.7 GO:0001507 ... P22303 36193860
    172870 8aen:B (3.01) BS04 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    172871 8aen:B (3.01) BS05 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    172872 8aen:B (3.01) BS06 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    172873 8aer:A (1.77) BS01 MG ? N/A A9WIU3 37952891
    172874 8aer:A (1.77) BS02 MG ? N/A A9WIU3 37952891
    172875 8aev:B (2.89) BS01 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    172876 8aev:B (2.89) BS02 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    172877 8aev:B (2.89) BS03 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    172878 8af1:A (1.57) BS01 ZN N/A GO:0004222 ... N/A 36555752
    172879 8afj:A (1.6) BS01 FE ? GO:0006400 ... A0A179QS89 N/A
    172880 8afj:A (1.6) BS02 FE ? GO:0006400 ... A0A179QS89 N/A
    172881 8afj:B (1.6) BS01 FE ? GO:0006400 ... A0A179QS89 N/A
    172882 8afj:B (1.6) BS02 FE ? GO:0006400 ... A0A179QS89 N/A
    172883 8afj:B (1.6) BS03 CA ? GO:0006400 ... A0A179QS89 N/A
    172884 8afj:B (1.6) BS04 CA ? GO:0006400 ... A0A179QS89 N/A
    172885 8agc:A (3.1) BS04 MG 2.4.99.18 GO:0004576 ... P39007 36435935
    172886 8agd:A (3.5) BS04 CU ? N/A Q9RRB6 36502921
    172887 8agd:A (3.5) BS05 CU ? N/A Q9RRB6 36502921
    172888 8agd:A (3.5) BS06 CU ? N/A Q9RRB6 36502921
    172889 8agd:A (3.5) BS07 FE ? N/A Q9RRB6 36502921
    172890 8agd:B (3.5) BS05 CU ? N/A Q9RRB6 36502921
    172891 8agd:B (3.5) BS06 CU ? N/A Q9RRB6 36502921
    172892 8agd:B (3.5) BS07 CU ? N/A Q9RRB6 36502921
    172893 8agd:B (3.5) BS08 FE ? N/A Q9RRB6 36502921
    172894 8agd:C (3.5) BS05 CU ? N/A Q9RRB6 36502921
    172895 8agd:C (3.5) BS06 CU ? N/A Q9RRB6 36502921
    172896 8agd:C (3.5) BS07 CU ? N/A Q9RRB6 36502921
    172897 8agd:C (3.5) BS08 FE ? N/A Q9RRB6 36502921
    172898 8agd:H (3.5) BS01 CU ? N/A Q9RWM2 36502921
    172899 8agd:I (3.5) BS01 CU ? N/A Q9RWM2 36502921
    172900 8agd:L (3.5) BS01 CU ? N/A Q9RWM2 36502921
    172901 8age:A (2.8) BS03 MG 2.4.99.18 GO:0004576 ... P39007 36435935
    172902 8agg:A (3.6) BS01 MG 3.1.3.- GO:0005576 ... Q5ZXN5 37076474
    172903 8agt:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    172904 8agt:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    172905 8agt:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    172906 8agt:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    172907 8agt:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    172908 8agt:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    172909 8agt:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172910 8agt:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172911 8agt:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    172912 8agt:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    172913 8agu:R (2.7) BS02 MG ? GO:0002181 ... P38061 36804914
    172914 8agu:T (2.7) BS02 ZN ? GO:0002181 ... P87262 36804914
    172915 8agu:W (2.7) BS03 ZN ? GO:0000448 ... P49166 36804914
    172916 8agu:Z (2.7) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    172917 8agu:b (2.7) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    172918 8agu:c (2.7) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    172919 8agu:e (2.7) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172920 8agu:e (2.7) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172921 8agu:j (2.7) BS02 MG ? GO:0002181 ... P0CX45 36804914
    172922 8agu:k (2.7) BS02 MG ? GO:0000027 ... P14126 36804914
    172923 8agv:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    172924 8agv:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    172925 8agv:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    172926 8agv:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    172927 8agv:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    172928 8agv:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    172929 8agv:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172930 8agv:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172931 8agv:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    172932 8agv:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    172933 8agw:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    172934 8agw:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    172935 8agw:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    172936 8agw:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    172937 8agw:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    172938 8agw:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    172939 8agw:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172940 8agw:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172941 8agw:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    172942 8agw:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    172943 8agx:R (2.4) BS02 MG ? GO:0002181 ... P38061 36804914
    172944 8agx:T (2.4) BS02 ZN ? GO:0002181 ... P87262 36804914
    172945 8agx:W (2.4) BS03 ZN ? GO:0000448 ... P49166 36804914
    172946 8agx:Z (2.4) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    172947 8agx:b (2.4) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    172948 8agx:c (2.4) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    172949 8agx:e (2.4) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172950 8agx:e (2.4) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172951 8agx:j (2.4) BS02 MG ? GO:0002181 ... P0CX45 36804914
    172952 8agx:k (2.4) BS02 MG ? GO:0000027 ... P14126 36804914
    172953 8agz:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    172954 8agz:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    172955 8agz:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    172956 8agz:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    172957 8agz:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    172958 8agz:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    172959 8agz:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172960 8agz:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172961 8agz:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    172962 8agz:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    172963 8ah3:A (1.4) BS01 CA ? GO:0046872 ... F5IZG2 N/A
    172964 8ah3:A (1.4) BS02 CA ? GO:0046872 ... F5IZG2 N/A
    172965 8ahm:A (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    172966 8ahm:C (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    172967 8ahm:F (2.42) BS02 MG N/A GO:0036211 ... N/A 36281761
    172968 8ahs:A (2.48) BS02 CA ? GO:0000086 ... P0DP23 36906144
    172969 8ahs:A (2.48) BS03 CA ? GO:0000086 ... P0DP23 36906144
    172970 8ahs:A (2.48) BS04 CA ? GO:0000086 ... P0DP23 36906144
    172971 8ahs:A (2.48) BS05 CA ? GO:0000086 ... P0DP23 36906144
    172972 8aht:A (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    172973 8aht:A (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    172974 8aht:A (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    172975 8aht:A (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    172976 8aht:B (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    172977 8aht:B (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    172978 8aht:B (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    172979 8aht:B (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    172980 8aht:C (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    172981 8aht:C (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    172982 8aht:C (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    172983 8aht:C (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    172984 8aht:D (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    172985 8aht:D (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    172986 8aht:D (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    172987 8aht:D (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    172988 8ahy:B (1.7) BS02 CA ? GO:0005245 ... P62166 38018500
    172989 8ahy:B (1.7) BS03 CA ? GO:0005245 ... P62166 38018500
    172990 8aii:A (1.82) BS03 MG 2.7.7.18 GO:0003824 ... A0A133MWI0 37544558
    172991 8aij:AAA (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    172992 8aij:AAA (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    172993 8aij:BBB (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    172994 8aij:BBB (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    172995 8aij:CCC (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    172996 8aij:CCC (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    172997 8aij:DDD (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    172998 8aij:DDD (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    172999 8aio:A (1.52) BS07 MG 1.12.7.2 GO:0005506 ... P29166 36464641
    173000 8aio:B (1.52) BS07 MG 1.12.7.2 GO:0005506 ... P29166 36464641
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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