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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172601 8a7k:A (1.3) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172602 8a7k:A (1.3) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172603 8a7k:A (1.3) BS03 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172604 8a7k:A (1.3) BS04 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172605 8a7k:B (1.3) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172606 8a7k:B (1.3) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172607 8a7k:B (1.3) BS03 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172608 8a7k:B (1.3) BS04 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172609 8a7l:A (1.85) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172610 8a7l:A (1.85) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172611 8a7r:A (2.0) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172612 8a7r:A (2.0) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172613 8a7s:A (1.542) BS02 MG ? N/A A9WIU3 37952891
    172614 8a7u:A (1.55) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172615 8a7u:A (1.55) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172616 8a82:A (2.05) BS01 FE ? GO:0046872 ... K7WEY7 36917986
    172617 8a8d:A (2.1) BS01 ZN N/A GO:0000103 ... N/A 37277534
    172618 8a8d:A (2.1) BS02 CA N/A GO:0000103 ... N/A 37277534
    172619 8a8d:B (2.1) BS01 ZN N/A GO:0000103 ... N/A 37277534
    172620 8a8d:B (2.1) BS02 CA N/A GO:0000103 ... N/A 37277534
    172621 8a8f:A (1.85) BS01 MN 3.1.3.16 GO:0000076 ... P32598 38029752
    172622 8a8f:A (1.85) BS02 MN 3.1.3.16 GO:0000076 ... P32598 38029752
    172623 8a8g:A (1.97) BS01 ZN N/A GO:0000103 ... N/A 37277534
    172624 8a8k:D (3.1) BS02 MN N/A N/A N/A 37277534
    172625 8a8k:E (3.1) BS02 MN N/A N/A N/A 37277534
    172626 8a8k:F (3.1) BS02 MN N/A N/A N/A 37277534
    172627 8a8m:A (4.0) BS02 MG 2.7.11.24 GO:0000077 ... Q16539 37708276
    172628 8a8m:B (4.0) BS02 MG 2.7.12.2 GO:0000165 ... P52564 37708276
    172629 8a8o:A (1.45) BS02 CA N/A GO:0016491 ... N/A 37277534
    172630 8a8o:B (1.45) BS02 CA N/A GO:0016491 ... N/A 37277534
    172631 8a8z:A (1.6) BS02 ZN ? N/A F8W4B7 36528061
    172632 8a8z:B (1.6) BS02 ZN ? N/A F8W4B7 36528061
    172633 8a90:A (2.574) BS01 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    172634 8a90:A (2.574) BS02 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    172635 8a90:B (2.574) BS01 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    172636 8a90:B (2.574) BS02 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    172637 8a92:A (1.37) BS02 ZN ? GO:0000976 ... P04637 36561072
    172638 8a92:B (1.37) BS01 ZN ? GO:0000976 ... P04637 36561072
    172639 8a98:Sb (2.46) BS02 ZN ? GO:0003729 ... Q4Q8L6 38722744
    172640 8a98:Sc (2.46) BS02 ZN ? GO:0000028 ... Q4Q140 38722744
    172641 8a98:j (2.46) BS04 ZN ? GO:0003723 ... E9AEH2 38722744
    172642 8a98:o (2.46) BS04 ZN ? GO:0003735 ... Q4QC01 38722744
    172643 8a9c:B (1.8) BS02 MG 2.2.1.7 GO:0003824 ... A6T5F3 N/A
    172644 8a9j:D (2.8) BS01 ZN 3.4.19.12 GO:0001501 ... O94782 36170365
    172645 8a9k:D (2.85) BS01 ZN 3.4.19.12 GO:0001501 ... O94782 36170365
    172646 8a9t:A (2.304) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    172647 8a9t:C (2.304) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    172648 8a9t:C (2.304) BS03 CA 3.6.5.- GO:0000226 ... P81947 36242921
    172649 8a9y:A (3.5) BS01 MG ? N/A Q8A6W3 37286596
    172650 8a9y:I (3.5) BS01 MG ? N/A Q8A6W3 37286596
    172651 8a9z:A (2.294) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    172652 8a9z:C (2.294) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    172653 8a9z:C (2.294) BS03 CA 3.6.5.- GO:0000226 ... P81947 36242921
    172654 8aa0:A (3.2) BS03 MG ? N/A Q8A6W3 37286596
    172655 8aa0:B (3.2) BS04 MG ? GO:0016020 ... Q8A6W4 37286596
    172656 8aa0:I (3.2) BS03 MG ? N/A Q8A6W3 37286596
    172657 8aa0:J (3.2) BS04 MG ? GO:0016020 ... Q8A6W4 37286596
    172658 8aa1:A (2.9) BS06 MG ? N/A Q8A6W3 37286596
    172659 8aa1:B (2.9) BS05 MG ? GO:0016020 ... Q8A6W4 37286596
    172660 8aa1:I (2.9) BS06 MG ? N/A Q8A6W3 37286596
    172661 8aa1:J (2.9) BS05 MG ? GO:0016020 ... Q8A6W4 37286596
    172662 8aa2:A (3.1) BS04 MG ? N/A Q8A6W3 37286596
    172663 8aa2:B (3.1) BS04 MG ? GO:0016020 ... Q8A6W4 37286596
    172664 8aa2:I (3.1) BS05 MG ? N/A Q8A6W3 37286596
    172665 8aa2:J (3.1) BS04 MG ? GO:0016020 ... Q8A6W4 37286596
    172666 8aa3:A (2.7) BS05 MG ? N/A Q8A6W3 37286596
    172667 8aa3:B (2.7) BS04 MG ? GO:0016020 ... Q8A6W4 37286596
    172668 8aa3:I (2.7) BS04 MG ? N/A Q8A6W3 37286596
    172669 8aa3:J (2.7) BS04 MG ? GO:0016020 ... Q8A6W4 37286596
    172670 8aa6:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36594655
    172671 8aae:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36594655
    172672 8aaf:R (2.5) BS02 MG ? GO:0002181 ... P38061 36804914
    172673 8aaf:T (2.5) BS02 ZN ? GO:0002181 ... P87262 36804914
    172674 8aaf:W (2.5) BS03 ZN ? GO:0000448 ... P49166 36804914
    172675 8aaf:Z (2.5) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    172676 8aaf:b (2.5) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    172677 8aaf:c (2.5) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    172678 8aaf:e (2.5) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172679 8aaf:e (2.5) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    172680 8aaf:j (2.5) BS02 MG ? GO:0002181 ... P0CX45 36804914
    172681 8aaf:k (2.5) BS02 MG ? GO:0000027 ... P14126 36804914
    172682 8aaj:A (3.7) BS01 ZN ? GO:0000724 ... Q9V1Y9 37087464
    172683 8aan:A (2.19) BS04 MG ? GO:0003677 ... P03856 37713613
    172684 8aas:A (3.2) BS02 ZN ? GO:0003676 ... G8ZHS0 37087464
    172685 8aas:A (3.2) BS03 CA ? GO:0003676 ... G8ZHS0 37087464
    172686 8aau:L (1.74) BS02 MG 2.7.11.1 GO:0004672 ... P53667 36136092
    172687 8aav:A (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172688 8aav:A (2.0) BS04 MG 1.16.3.1 GO:0004322 ... P02794 36504125
    172689 8aav:B (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172690 8aav:C (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172691 8aav:D (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172692 8aav:E (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172693 8aav:F (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172694 8aav:F (2.0) BS04 MG 1.16.3.1 GO:0004322 ... P02794 36504125
    172695 8aav:G (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172696 8aav:G (2.0) BS04 MG 1.16.3.1 GO:0004322 ... P02794 36504125
    172697 8aav:H (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    172698 8aav:H (2.0) BS04 MG 1.16.3.1 GO:0004322 ... P02794 36504125
    172699 8ab0:D (6.09) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    172700 8ab0:E (6.09) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    172701 8ab0:F (6.09) BS02 ZN ? GO:0003677 ... Q5SHY0 37081315
    172702 8aby:D (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172703 8aby:D (3.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172704 8aby:D (3.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172705 8abz:D (3.4) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172706 8abz:D (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172707 8abz:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172708 8ac0:D (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172709 8ac0:D (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172710 8ac0:D (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172711 8ac1:D (4.06) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172712 8ac1:D (4.06) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172713 8ac1:D (4.06) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172714 8ac2:D (3.7) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172715 8ac2:D (3.7) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172716 8ac2:D (3.7) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172717 8ac7:A (1.4) BS01 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172718 8ac7:A (1.4) BS02 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172719 8ac7:A (1.4) BS03 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172720 8ac7:A (1.4) BS04 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172721 8ac7:B (1.4) BS01 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172722 8ac7:B (1.4) BS02 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172723 8ac7:B (1.4) BS03 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172724 8ac7:B (1.4) BS04 ZN 3.4.11.1 GO:0004177 ... Q02PA2 37386135
    172725 8ac9:A (2.351) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172726 8ac9:A (2.351) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172727 8ac9:A (2.351) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172728 8ac9:A (2.351) BS04 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172729 8ac9:B (2.351) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172730 8ac9:B (2.351) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172731 8ac9:B (2.351) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172732 8aca:A (2.54) BS01 CU ? N/A Q9RWM2 36502921
    172733 8aca:B (2.54) BS01 CU ? N/A Q9RWM2 36502921
    172734 8aca:C (2.54) BS01 CU ? N/A Q9RWM2 36502921
    172735 8acf:H (1.8) BS01 CA N/A N/A N/A N/A
    172736 8acg:A (2.84) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172737 8acg:A (2.84) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172738 8acg:A (2.84) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172739 8acg:A (2.84) BS04 MG 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172740 8acg:B (2.84) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172741 8acg:B (2.84) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172742 8acg:B (2.84) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172743 8acg:C (2.84) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172744 8acg:C (2.84) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172745 8acg:C (2.84) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172746 8acg:D (2.84) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172747 8acg:D (2.84) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172748 8acg:D (2.84) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172749 8acg:D (2.84) BS04 MG 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172750 8acg:E (2.84) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172751 8acg:E (2.84) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172752 8acg:E (2.84) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172753 8acg:F (2.84) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172754 8acg:F (2.84) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172755 8acg:F (2.84) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172756 8acg:F (2.84) BS04 MG 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172757 8aci:H (1.85) BS01 CA N/A N/A N/A N/A
    172758 8ack:A (1.784) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172759 8ack:A (1.784) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172760 8ack:A (1.784) BS04 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172761 8ack:A (1.784) BS05 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172762 8ack:B (1.784) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172763 8ack:B (1.784) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172764 8ack:B (1.784) BS04 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172765 8acm:AAA (2.14) BS01 MG 2.7.11.24 GO:0000077 ... P47811 N/A
    172766 8acm:AAA (2.14) BS02 MG 2.7.11.24 GO:0000077 ... P47811 N/A
    172767 8acm:AAA (2.14) BS03 MG 2.7.11.24 GO:0000077 ... P47811 N/A
    172768 8aco:AAA (2.65) BS02 MG 2.7.11.24 GO:0000077 ... P47811 N/A
    172769 8acp:D (4.5) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172770 8acp:D (4.5) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172771 8acp:D (4.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172772 8acq:A (2.54) BS04 CU ? N/A Q9RRB6 36502921
    172773 8acq:A (2.54) BS05 CU ? N/A Q9RRB6 36502921
    172774 8acq:A (2.54) BS06 CU ? N/A Q9RRB6 36502921
    172775 8acq:A (2.54) BS07 FE ? N/A Q9RRB6 36502921
    172776 8acq:B (2.54) BS05 CU ? N/A Q9RRB6 36502921
    172777 8acq:B (2.54) BS06 CU ? N/A Q9RRB6 36502921
    172778 8acq:B (2.54) BS07 CU ? N/A Q9RRB6 36502921
    172779 8acq:B (2.54) BS08 FE ? N/A Q9RRB6 36502921
    172780 8acq:C (2.54) BS05 CU ? N/A Q9RRB6 36502921
    172781 8acq:C (2.54) BS06 CU ? N/A Q9RRB6 36502921
    172782 8acq:C (2.54) BS07 CU ? N/A Q9RRB6 36502921
    172783 8acq:C (2.54) BS08 FE ? N/A Q9RRB6 36502921
    172784 8acq:H (2.54) BS01 CU ? N/A Q9RWM2 36502921
    172785 8acq:I (2.54) BS01 CU ? N/A Q9RWM2 36502921
    172786 8acq:L (2.54) BS01 CU ? N/A Q9RWM2 36502921
    172787 8acr:A (2.1) BS01 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172788 8acr:A (2.1) BS02 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172789 8acr:A (2.1) BS03 ZN 3.4.11.1 GO:0004177 ... Q9HZQ8 37386135
    172790 8act:B (3.6) BS02 MG ? GO:0003774 ... P12883 37258552
    172791 8acu:A (2.97) BS01 MN 2.7.6.5 GO:0015969 ... O54408 N/A
    172792 8acu:B (2.97) BS01 MN 2.7.6.5 GO:0015969 ... O54408 N/A
    172793 8acv:A (2.26) BS02 ZN ? GO:0046872 ... A0A075X7C6 N/A
    172794 8acv:B (2.26) BS02 ZN ? GO:0046872 ... A0A075X7C6 N/A
    172795 8acy:B (3.5) BS03 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    172796 8ad1:D (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172797 8ad1:D (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172798 8ad1:D (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    172799 8ad2:A (2.0) BS01 ZN ? GO:0046872 ... Q94EW1 N/A
    172800 8ad2:B (2.0) BS01 ZN ? GO:0046872 ... Q94EW1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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