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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    160001 7prl:A (2.48) BS01 CU ? N/A Q02817 36206754
    160002 7prr:A (1.8) BS02 CA ? N/A Q9HVF8 35254130
    160003 7prv:A (2.7) BS04 ZN ? GO:0003700 ... P04150 36747092
    160004 7prv:A (2.7) BS05 ZN ? GO:0003700 ... P04150 36747092
    160005 7prv:B (2.7) BS03 ZN ? GO:0003700 ... P04150 36747092
    160006 7prv:B (2.7) BS04 ZN ? GO:0003700 ... P04150 36747092
    160007 7prw:A (2.502) BS04 ZN ? GO:0003700 ... P04150 36747092
    160008 7prw:A (2.502) BS05 ZN ? GO:0003700 ... P04150 36747092
    160009 7prw:B (2.502) BS03 ZN ? GO:0003700 ... P04150 36747092
    160010 7prw:B (2.502) BS04 ZN ? GO:0003700 ... P04150 36747092
    160011 7ps9:A (1.8) BS01 ZN ? GO:0046872 ... A4TVL0 35234143
    160012 7ps9:B (1.8) BS01 ZN ? GO:0046872 ... A4TVL0 35234143
    160013 7ps9:C (1.8) BS01 ZN ? GO:0046872 ... A4TVL0 35234143
    160014 7psa:R (3.4) BS01 ZN ? GO:0001822 ... P52503 35063503
    160015 7psn:A (2.9) BS02 MG 7.-.-.- GO:0005524 ... P40416 34936443
    160016 7psn:B (2.9) BS03 MG 7.-.-.- GO:0005524 ... P40416 34936443
    160017 7pso:A (1.52) BS01 ZN ? GO:0046872 ... A4TVL0 35234143
    160018 7pso:B (1.52) BS01 ZN ? GO:0046872 ... A4TVL0 35234143
    160019 7pso:C (1.52) BS01 ZN ? GO:0046872 ... A4TVL0 35234143
    160020 7psp:A (2.61) BS02 CA ? GO:0001837 ... P26447 N/A
    160021 7psp:A (2.61) BS03 CA ? GO:0001837 ... P26447 N/A
    160022 7psp:B (2.61) BS03 CA ? GO:0001837 ... P26447 N/A
    160023 7psp:B (2.61) BS04 CA ? GO:0001837 ... P26447 N/A
    160024 7psq:A (1.91) BS01 CA ? GO:0001837 ... P26447 N/A
    160025 7psq:A (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    160026 7psq:C (1.91) BS01 CA ? GO:0001837 ... P26447 N/A
    160027 7psq:C (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    160028 7psq:E (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    160029 7psq:E (1.91) BS03 CA ? GO:0001837 ... P26447 N/A
    160030 7psq:G (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    160031 7psq:G (1.91) BS03 CA ? GO:0001837 ... P26447 N/A
    160032 7psq:G (1.91) BS04 CA ? GO:0001837 ... P26447 N/A
    160033 7psw:A (1.21) BS01 FE 1.21.3.1 GO:0005506 ... P05326 35835215
    160034 7psy:A (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    160035 7psy:A (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    160036 7psy:B (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    160037 7psy:B (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    160038 7psy:C (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    160039 7psy:C (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    160040 7psy:D (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    160041 7psy:D (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    160042 7psz:A (1.898) BS02 CA ? GO:0000086 ... P0DP23 35945584
    160043 7psz:A (1.898) BS03 CA ? GO:0000086 ... P0DP23 35945584
    160044 7psz:A (1.898) BS04 CA ? GO:0000086 ... P0DP23 35945584
    160045 7psz:A (1.898) BS05 CA ? GO:0000086 ... P0DP23 35945584
    160046 7pt1:A (1.553) BS03 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160047 7pt1:B (1.553) BS05 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160048 7pt2:A (1.762) BS03 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160049 7pt2:A (1.762) BS04 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160050 7pt2:B (1.762) BS05 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160051 7pt3:A (1.625) BS03 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160052 7pt3:B (1.625) BS04 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160053 7pt4:A (1.64) BS03 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160054 7pt4:B (1.64) BS02 MG 4.1.-.- GO:0000287 ... P0DUV9 34952003
    160055 7pt6:2 (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35614055
    160056 7pt6:4 (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 35614055
    160057 7pt6:5 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 35614055
    160058 7pt6:6 (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 35614055
    160059 7pt6:7 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 35614055
    160060 7pt6:8 (3.2) BS03 ZN 2.7.11.1 GO:0000727 ... P06243 35614055
    160061 7pt6:9 (3.2) BS01 ZN ? GO:0000775 ... P32325 35614055
    160062 7pt6:B (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35614055
    160063 7pt6:D (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 35614055
    160064 7pt6:E (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 35614055
    160065 7pt6:F (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 35614055
    160066 7pt6:G (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 35614055
    160067 7pt6:H (3.2) BS03 ZN 2.7.11.1 GO:0000727 ... P06243 35614055
    160068 7pt6:I (3.2) BS01 ZN ? GO:0000775 ... P32325 35614055
    160069 7pt7:2 (3.8) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35614055
    160070 7pt7:4 (3.8) BS01 ZN 3.6.4.12 GO:0000727 ... P30665 35614055
    160071 7pt7:5 (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 35614055
    160072 7pt7:6 (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 35614055
    160073 7pt7:7 (3.8) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 35614055
    160074 7pt7:8 (3.8) BS03 MG 2.7.11.1 GO:0000727 ... P06243 35614055
    160075 7pt7:8 (3.8) BS05 MG 2.7.11.1 GO:0000727 ... P06243 35614055
    160076 7pt7:8 (3.8) BS06 ZN 2.7.11.1 GO:0000727 ... P06243 35614055
    160077 7pt7:9 (3.8) BS01 ZN ? GO:0000775 ... P32325 35614055
    160078 7pt7:B (3.8) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35614055
    160079 7pt7:D (3.8) BS01 ZN 3.6.4.12 GO:0000727 ... P30665 35614055
    160080 7pt7:E (3.8) BS04 ZN 3.6.4.12 GO:0000727 ... P29496 35614055
    160081 7pt7:F (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 35614055
    160082 7pt7:G (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 35614055
    160083 7pth:A (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160084 7pth:B (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160085 7pth:C (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160086 7pth:D (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160087 7ptj:A (2.1) BS04 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160088 7ptj:B (2.1) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160089 7ptj:C (2.1) BS03 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160090 7ptj:D (2.1) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    160091 7ptm:A (1.85) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160092 7ptm:A (1.85) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160093 7ptm:A (1.85) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160094 7ptm:B (1.85) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160095 7ptm:B (1.85) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160096 7ptm:B (1.85) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160097 7ptm:B (1.85) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160098 7ptm:C (1.85) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160099 7ptm:C (1.85) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160100 7ptm:C (1.85) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160101 7ptm:D (1.85) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160102 7ptm:D (1.85) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160103 7ptm:D (1.85) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160104 7ptm:E (1.85) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160105 7ptm:E (1.85) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160106 7ptm:E (1.85) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160107 7ptm:E (1.85) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160108 7ptm:F (1.85) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160109 7ptm:F (1.85) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160110 7ptm:F (1.85) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160111 7ptr:A (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    160112 7ptr:A (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    160113 7ptr:A (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    160114 7ptr:B (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    160115 7ptr:B (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    160116 7ptr:B (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    160117 7ptr:C (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    160118 7ptr:C (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    160119 7ptr:C (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    160120 7ptr:D (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    160121 7ptr:D (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    160122 7ptr:D (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    160123 7ptr:E (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    160124 7ptr:E (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    160125 7ptr:E (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    160126 7ptr:F (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    160127 7ptr:F (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    160128 7ptr:F (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    160129 7ptz:AAA (1.093) BS01 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 35204695
    160130 7pu0:A (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160131 7pu0:A (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160132 7pu0:A (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160133 7pu0:A (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160134 7pu0:B (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160135 7pu0:B (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160136 7pu0:B (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160137 7pu0:C (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160138 7pu0:C (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160139 7pu0:C (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160140 7pu0:D (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160141 7pu0:D (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160142 7pu0:D (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160143 7pu0:D (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160144 7pu0:E (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160145 7pu0:E (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160146 7pu0:E (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160147 7pu0:E (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160148 7pu0:F (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160149 7pu0:F (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160150 7pu0:F (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160151 7pu0:F (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160152 7pu1:AAA (1.06) BS01 CU 3.2.1.4 GO:0004497 ... G3XAP7 35204695
    160153 7pu1:BBB (1.06) BS01 CU 3.2.1.4 GO:0004497 ... G3XAP7 35204695
    160154 7pu5:B (2.999) BS01 MG ? GO:0003676 ... P23246 35245601
    160155 7pu5:D (2.999) BS01 MG ? GO:0003676 ... P23246 35245601
    160156 7pu5:H (2.999) BS01 MG ? GO:0003676 ... P23246 35245601
    160157 7pu5:J (2.999) BS01 MG ? GO:0003676 ... P23246 35245601
    160158 7pu5:L (2.999) BS01 MG ? GO:0003676 ... P23246 35245601
    160159 7pu7:A (2.9) BS03 ZN 2.7.7.7 GO:0003676 ... P9WNT7 35143160
    160160 7pu7:A (2.9) BS04 ZN 2.7.7.7 GO:0003676 ... P9WNT7 35143160
    160161 7pu9:A (2.279) BS03 CA ? GO:0000086 ... P0DP23 35945584
    160162 7pu9:A (2.279) BS04 CA ? GO:0000086 ... P0DP23 35945584
    160163 7pu9:A (2.279) BS05 CA ? GO:0000086 ... P0DP23 35945584
    160164 7pu9:A (2.279) BS06 CA ? GO:0000086 ... P0DP23 35945584
    160165 7pua:Fd (3.6) BS02 ZN ? GO:0005739 ... Q581T4 35042777
    160166 7pua:IA (3.6) BS04 MG ? GO:0000166 ... C9ZSN7 35042777
    160167 7pub:Cr (3.7) BS01 ZN ? GO:0004784 ... Q585I1 35042777
    160168 7pub:DA (3.7) BS02 ZN ? GO:0005739 ... Q57UJ2 35042777
    160169 7pub:DS (3.7) BS02 ZN ? GO:0005739 ... Q388L7 35042777
    160170 7pub:IA (3.7) BS04 MG ? GO:0000166 ... Q57WE3 35042777
    160171 7pug:A (2.66) BS03 CA N/A N/A N/A 35503213
    160172 7puh:A (1.3) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160173 7puh:A (1.3) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160174 7puh:A (1.3) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160175 7puh:A (1.3) BS06 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160176 7puh:B (1.3) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160177 7puh:B (1.3) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160178 7puh:B (1.3) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160179 7puh:B (1.3) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160180 7puh:C (1.3) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160181 7puh:C (1.3) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160182 7puh:C (1.3) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160183 7puh:C (1.3) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160184 7puh:D (1.3) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160185 7puh:D (1.3) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160186 7puh:D (1.3) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160187 7puh:D (1.3) BS06 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160188 7puh:E (1.3) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160189 7puh:E (1.3) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160190 7puh:E (1.3) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160191 7puh:E (1.3) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160192 7puh:F (1.3) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160193 7puh:F (1.3) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160194 7puh:F (1.3) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160195 7puh:F (1.3) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    160196 7puj:A (1.752) BS01 ZN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    160197 7puj:A (1.752) BS02 ZN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    160198 7pul:A (1.4) BS01 CA 3.2.1.52 GO:0004553 ... Q839P8 35241669
    160199 7pul:A (1.4) BS02 MG 3.2.1.52 GO:0004553 ... Q839P8 35241669
    160200 7pul:A (1.4) BS03 MG 3.2.1.52 GO:0004553 ... Q839P8 35241669
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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