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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    145001 6y8n:A (1.5) BS02 ZN 5.6.2.2 GO:0003677 ... G7CIP8 32728686
    145002 6y8n:B (1.5) BS02 ZN 5.6.2.2 GO:0003677 ... G7CIP8 32728686
    145003 6y8p:A (2.3) BS01 ZN 2.1.1.63 GO:0003677 ... E5BBQ0 34339177
    145004 6y8s:A (1.629) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145005 6y8x:AA (2.25) BS01 CA N/A GO:0004614 ... N/A 33287293
    145006 6y8y:A (1.95) BS01 CA ? GO:0004614 ... A0A6P3VN15 33287293
    145007 6y8z:A (2.05) BS01 CA ? GO:0004614 ... A0A6P3VN15 33287293
    145008 6y94:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 32317284
    145009 6y94:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 32317284
    145010 6y94:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 32317284
    145011 6y94:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 32317284
    145012 6y98:A (2.8) BS03 CA ? N/A B4UMX2 32669365
    145013 6y9c:A (1.8) BS01 FE 1.14.13.239 GO:0005506 ... D0C9N6 36617384
    145014 6y9d:A (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145015 6y9d:B (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145016 6y9d:C (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145017 6y9d:D (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145018 6y9d:E (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145019 6y9d:F (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145020 6y9d:G (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145021 6y9d:H (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145022 6y9d:I (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145023 6y9d:J (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145024 6y9d:K (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145025 6y9d:L (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    145026 6y9i:CCC (1.9) BS01 MG N/A GO:0005198 ... N/A 32723915
    145027 6y9j:A (1.1) BS03 CA ? N/A Q6FUW5 32669365
    145028 6y9t:A (2.78) BS01 CA 3.2.1.10 GO:0004556 ... Q5FI02 32444471
    145029 6y9t:B (2.78) BS01 CA 3.2.1.10 GO:0004556 ... Q5FI02 32444471
    145030 6ya1:A (1.48) BS01 ZN 3.4.24.- GO:0004222 ... P21347 33491325
    145031 6ya1:A (1.48) BS02 ZN 3.4.24.- GO:0004222 ... P21347 33491325
    145032 6ya1:A (1.48) BS03 ZN 3.4.24.- GO:0004222 ... P21347 33491325
    145033 6ya1:A (1.48) BS04 ZN 3.4.24.- GO:0004222 ... P21347 33491325
    145034 6ya5:A (2.0) BS01 MN 3.1.-.- GO:0003723 ... C3W5X6 32883638
    145035 6ya5:A (2.0) BS02 MG 3.1.-.- GO:0003723 ... C3W5X6 32883638
    145036 6ya6:A (1.44) BS02 ZN 2.7.11.1 GO:0004672 ... O00311 32521228
    145037 6ya6:B (1.44) BS01 ZN ? GO:0003676 ... Q9UBU7 32521228
    145038 6ya7:A (1.67) BS02 ZN 2.7.11.1 GO:0004672 ... O00311 32521228
    145039 6ya7:A (1.67) BS03 ZN 2.7.11.1 GO:0004672 ... O00311 32521228
    145040 6ya7:B (1.67) BS01 ZN ? GO:0003676 ... Q9UBU7 32521228
    145041 6ya8:A (1.79) BS02 MG 2.7.11.1 GO:0004672 ... O00311 32521228
    145042 6ya8:A (1.79) BS04 ZN 2.7.11.1 GO:0004672 ... O00311 32521228
    145043 6ya8:B (1.79) BS01 ZN ? GO:0003676 ... Q9UBU7 32521228
    145044 6ya9:A (2.15) BS01 CA ? GO:0000086 ... P0DP23 34845372
    145045 6ya9:A (2.15) BS02 CA ? GO:0000086 ... P0DP23 34845372
    145046 6ya9:A (2.15) BS03 CA ? GO:0000086 ... P0DP23 34845372
    145047 6ya9:A (2.15) BS04 CA ? GO:0000086 ... P0DP23 34845372
    145048 6ya9:A (2.15) BS05 CA ? GO:0000086 ... P0DP23 34845372
    145049 6ya9:A (2.15) BS06 CA ? GO:0000086 ... P0DP23 34845372
    145050 6yac:B (2.5) BS45 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    145051 6yak:AAA (1.34) BS02 CA N/A N/A N/A 33193259
    145052 6yak:AAA (1.34) BS03 CA N/A N/A N/A 33193259
    145053 6yak:CCC (1.34) BS02 CA N/A N/A N/A 33193259
    145054 6yak:CCC (1.34) BS03 CA N/A N/A N/A 33193259
    145055 6yau:A (1.397) BS01 CA ? N/A P07306 33344141
    145056 6yau:A (1.397) BS02 CA ? N/A P07306 33344141
    145057 6yau:A (1.397) BS03 CA ? N/A P07306 33344141
    145058 6yav:E (1.65) BS02 MG ? GO:0005737 ... Q44501 N/A
    145059 6yb9:A (2.406) BS03 MG 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    145060 6yb9:B (2.406) BS03 MG 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    145061 6ybo:A (1.06) BS01 MG 5.3.1.5 GO:0000287 ... P24300 32744257
    145062 6ybo:A (1.06) BS02 MG 5.3.1.5 GO:0000287 ... P24300 32744257
    145063 6ybr:A (1.2) BS01 MG 5.3.1.5 GO:0000287 ... P24300 32744257
    145064 6ybr:A (1.2) BS02 MG 5.3.1.5 GO:0000287 ... P24300 32744257
    145065 6ybs:V (3.1) BS02 MG ? GO:0000028 ... P46782 32883864
    145066 6ybs:f (3.1) BS02 MG ? GO:0002181 ... P62269 32883864
    145067 6ybs:k (3.1) BS02 ZN ? GO:0002181 ... P62979 32883864
    145068 6yby:A (1.8) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145069 6ybz:A (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145070 6ybz:B (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145071 6ybz:C (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145072 6ybz:D (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145073 6ybz:E (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145074 6yc0:A (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145075 6yc0:A (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145076 6yc0:B (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145077 6yc0:B (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145078 6yc0:C (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145079 6yc0:C (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145080 6yc0:D (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145081 6yc0:D (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145082 6yc0:E (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145083 6yc0:E (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145084 6yc1:A (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145085 6yc1:B (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145086 6yc1:C (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145087 6yc1:D (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145088 6yc1:E (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145089 6yc2:A (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145090 6yc2:B (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145091 6yc2:C (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145092 6yc2:D (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145093 6yc2:E (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145094 6yc3:A (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    145095 6yc3:B (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    145096 6yc3:C (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    145097 6yc3:D (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    145098 6yc3:E (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    145099 6yc4:A (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145100 6yc4:A (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145101 6yc4:B (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145102 6yc4:B (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145103 6yc4:C (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145104 6yc4:C (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145105 6yc4:D (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145106 6yc4:D (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145107 6yc4:E (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    145108 6yc4:E (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    145109 6ycu:A (1.35) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    145110 6ycu:A (1.35) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    145111 6ycw:A (1.34) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    145112 6ycw:A (1.34) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    145113 6ycx:A (3.99) BS02 MG ? GO:0000146 ... Q8IDR3 33046215
    145114 6ycy:A (2.55) BS01 MG ? GO:0000146 ... Q8IDR3 33046215
    145115 6ycz:A (3.27) BS01 MG ? GO:0000146 ... Q8IDR3 33046215
    145116 6yd0:D (1.95) BS01 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    145117 6yd0:D (1.95) BS02 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    145118 6yd2:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145119 6yd2:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145120 6yd2:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145121 6yd3:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145122 6yd3:A (2.0) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145123 6yd3:A (2.0) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145124 6yd4:A (1.7) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145125 6yd4:A (1.7) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145126 6yd4:A (1.7) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145127 6yd7:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145128 6yd7:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145129 6yd7:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    145130 6ydc:A (2.0) BS04 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145131 6ydc:B (2.0) BS05 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145132 6ydc:C (2.0) BS03 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145133 6ydc:D (2.0) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145134 6ydd:A (2.8) BS03 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145135 6ydd:B (2.8) BS03 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145136 6yde:A (2.2) BS06 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145137 6ydf:A (2.12) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145138 6ydf:B (2.12) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    145139 6ydg:A (1.9) BS05 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 32818374
    145140 6ydi:D (1.95) BS01 FE2 1.14.13.25 GO:0004497 ... P27353 N/A
    145141 6ydi:D (1.95) BS02 FE2 1.14.13.25 GO:0004497 ... P27353 N/A
    145142 6ydj:A (1.04) BS03 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    145143 6ydk:A (2.02) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    145144 6ydl:A (1.52) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    145145 6ydm:A (2.1) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    145146 6ydm:B (2.1) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    145147 6ydp:AB (3.0) BS02 MG ? GO:0003735 ... F1S001 32602580
    145148 6ydp:AR (3.0) BS02 ZN ? GO:0003735 ... A0A0M3KL54 32602580
    145149 6ydp:Ac (3.0) BS02 ZN ? GO:0003735 ... A0A0M3KL55 32602580
    145150 6ydp:Ap (3.0) BS02 ZN ? GO:0003735 ... Q767K8 32602580
    145151 6ydp:B5 (3.0) BS02 ZN ? GO:0003735 ... I3LTC4 32602580
    145152 6ydp:B9 (3.0) BS02 ZN ? GO:0003735 ... A0A287A731 32602580
    145153 6ydp:BC (3.0) BS04 MG ? GO:0003723 ... Q96RP9 32602580
    145154 6ydp:BD (3.0) BS02 MG ? GO:0003735 ... F1RRN2 32602580
    145155 6ydp:BP (3.0) BS02 MG N/A GO:0003735 ... N/A 32602580
    145156 6ydp:BQ (3.0) BS02 MG ? GO:0003735 ... F1RI89 32602580
    145157 6ydp:Be (3.0) BS02 MG ? GO:0003735 ... A0A8D1F1K9 32602580
    145158 6ydp:Bt (3.0) BS02 MG ? GO:0003735 ... A0A287BP93 32602580
    145159 6ydp:Bx (3.0) BS02 ZN ? GO:0003735 ... F1RRH6 32602580
    145160 6ydu:D (1.95) BS01 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    145161 6ydu:D (1.95) BS02 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    145162 6ydv:AAA (2.07) BS02 MN 1.14.11.65 GO:0032454 ... A4FUT8 N/A
    145163 6ydv:BBB (2.07) BS01 MN 1.14.11.65 GO:0032454 ... A4FUT8 N/A
    145164 6ydw:AB (4.2) BS02 MG ? GO:0003735 ... F1S001 32602580
    145165 6ydw:AR (4.2) BS02 ZN ? GO:0003735 ... A0A0M3KL54 32602580
    145166 6ydw:Ac (4.2) BS02 ZN ? GO:0003735 ... A0A0M3KL55 32602580
    145167 6ydw:Ap (4.2) BS02 ZN ? GO:0003735 ... Q767K8 32602580
    145168 6ydw:B5 (4.2) BS02 ZN ? GO:0003735 ... I3LTC4 32602580
    145169 6ydw:B9 (4.2) BS02 ZN ? GO:0003735 ... A0A287A731 32602580
    145170 6ydw:BC (4.2) BS05 MG ? GO:0003723 ... Q96RP9 32602580
    145171 6ydw:BD (4.2) BS02 MG ? GO:0003735 ... F1RRN2 32602580
    145172 6ydw:BP (4.2) BS02 MG N/A GO:0003735 ... N/A 32602580
    145173 6ydw:BQ (4.2) BS02 MG ? GO:0003735 ... F1RI89 32602580
    145174 6ydw:Be (4.2) BS02 MG ? GO:0003735 ... A0A8D1F1K9 32602580
    145175 6ydw:Bt (4.2) BS02 MG ? GO:0003735 ... A0A287BP93 32602580
    145176 6ydw:Bx (4.2) BS02 ZN ? GO:0003735 ... F1RRH6 32602580
    145177 6ydx:A (3.2) BS02 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 32676150
    145178 6ydx:B (3.2) BS02 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 32676150
    145179 6ydy:A (1.45) BS01 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    145180 6ye1:A (2.66) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145181 6ye1:A (2.66) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145182 6ye1:B (2.66) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145183 6ye1:B (2.66) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145184 6ye2:A (2.44) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145185 6ye2:A (2.44) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145186 6ye2:A (2.44) BS04 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145187 6ye2:B (2.44) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145188 6ye2:B (2.44) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145189 6ye2:B (2.44) BS04 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33399453
    145190 6yeh:A (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145191 6yeh:B (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145192 6yeh:C (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145193 6yeh:D (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145194 6yeh:E (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145195 6yeh:F (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145196 6yei:A (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145197 6yei:B (2.02) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145198 6yei:C (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145199 6yei:D (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145200 6yei:E (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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