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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    104801 5omf:A (2.092) BS05 MG 2.7.7.7
    3.1.-.-    		 GO:0000166 ... P77933 29211756
    104802 5omj:A (2.005) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    104803 5omj:A (2.005) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    104804 5omk:A (1.704) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    104805 5omk:A (1.704) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    104806 5omq:A (2.199) BS03 MG 2.7.7.7 GO:0000166 ... Q56366 29211756
    104807 5omq:A (2.199) BS04 MG 2.7.7.7 GO:0000166 ... Q56366 29211756
    104808 5omq:A (2.199) BS05 MN 2.7.7.7 GO:0000166 ... Q56366 29211756
    104809 5omv:A (2.003) BS03 MN 2.7.7.7 GO:0000166 ... Q56366 29211756
    104810 5omv:A (2.003) BS04 MG 2.7.7.7 GO:0000166 ... Q56366 29211756
    104811 5omw:D (2.6) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    104812 5on2:A (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    104813 5on2:D (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    104814 5on3:A (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    104815 5on6:AB (3.1) BS02 MG ? GO:0002181 ... P02406 29429877
    104816 5on6:AB (3.1) BS03 MG ? GO:0002181 ... P02406 29429877
    104817 5on6:AB (3.1) BS04 MG ? GO:0002181 ... P02406 29429877
    104818 5on6:AF (3.1) BS03 MG ? GO:0002181 ... P38061 29429877
    104819 5on6:AK (3.1) BS04 ZN ? GO:0000448 ... P49166 29429877
    104820 5on6:AN (3.1) BS02 ZN ? GO:0003735 ... P0CH08 29429877
    104821 5on6:AP (3.1) BS02 ZN ? GO:0002181 ... P0CX27 29429877
    104822 5on6:AQ (3.1) BS02 ZN ? GO:0002181 ... P0CX25 29429877
    104823 5on6:CD (3.1) BS03 MG ? GO:0002181 ... P0CX45 29429877
    104824 5on6:CD (3.1) BS04 MG ? GO:0002181 ... P0CX45 29429877
    104825 5on6:CD (3.1) BS05 MG ? GO:0002181 ... P0CX45 29429877
    104826 5on6:CE (3.1) BS05 MG ? GO:0000027 ... P14126 29429877
    104827 5on6:CE (3.1) BS06 MG ? GO:0000027 ... P14126 29429877
    104828 5on6:CE (3.1) BS07 MG ? GO:0000027 ... P14126 29429877
    104829 5on6:CG (3.1) BS04 MG ? GO:0000027 ... P26321 29429877
    104830 5on6:CP (3.1) BS04 MG ? GO:0002181 ... P05748 29429877
    104831 5on6:CQ (3.1) BS02 MG ? GO:0000470 ... P26784 29429877
    104832 5on6:CV (3.1) BS03 MG ? GO:0002181 ... Q02753 29429877
    104833 5on6:CX (3.1) BS04 MG ? GO:0002181 ... P0CX41 29429877
    104834 5on6:DH (3.1) BS03 MG ? GO:0000027 ... P05744 29429877
    104835 5on6:DI (3.1) BS02 MG ? GO:0002181 ... P87262 29429877
    104836 5on6:DL (3.1) BS04 ZN ? GO:0000448 ... P49166 29429877
    104837 5on6:DO (3.1) BS02 MG ? GO:0003735 ... P0CH08 29429877
    104838 5on6:DO (3.1) BS03 ZN ? GO:0003735 ... P0CH08 29429877
    104839 5on6:DQ (3.1) BS03 ZN ? GO:0002181 ... P0CX27 29429877
    104840 5on6:DR (3.1) BS03 ZN ? GO:0002181 ... P0CX25 29429877
    104841 5on6:T (3.1) BS02 MG ? GO:0000054 ... P0CX55 29429877
    104842 5on6:b (3.1) BS02 ZN ? GO:0003735 ... P39939 29429877
    104843 5on6:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 29429877
    104844 5on6:d6 (3.1) BS02 MG ? GO:0003735 ... P39939 29429877
    104845 5on6:d6 (3.1) BS03 ZN ? GO:0003735 ... P39939 29429877
    104846 5on6:d7 (3.1) BS02 ZN ? GO:0000028 ... P35997 29429877
    104847 5on6:d9 (3.1) BS03 ZN ? GO:0002181 ... P41057 29429877
    104848 5on6:e (3.1) BS03 ZN ? GO:0002181 ... P41057 29429877
    104849 5on6:e1 (3.1) BS02 ZN ? GO:0003735 ... P05759 29429877
    104850 5on6:g (3.1) BS02 ZN ? GO:0003735 ... P05759 29429877
    104851 5on6:i (3.1) BS03 MG ? GO:0000723 ... P39015 29429877
    104852 5on6:j (3.1) BS03 MG ? GO:0002181 ... P0CX45 29429877
    104853 5on6:k (3.1) BS04 MG ? GO:0000027 ... P14126 29429877
    104854 5on6:l (3.1) BS04 MG ? GO:0002181 ... P10664 29429877
    104855 5on6:n (3.1) BS02 MG ? GO:0000027 ... Q02326 29429877
    104856 5on6:r (3.1) BS04 MG ? GO:0000027 ... P41805 29429877
    104857 5on6:s4 (3.1) BS02 MG ? GO:0002181 ... P0CX35 29429877
    104858 5on6:sM (3.1) BS03 MG ? N/A P39015 29429877
    104859 5on6:x (3.1) BS04 MG ? GO:0000448 ... P05740 29429877
    104860 5onh:A (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    104861 5onh:D (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    104862 5onj:A (1.7) BS02 ZN ? N/A O31815 30387270
    104863 5onk:A (1.03) BS01 ZN ? N/A O31815 30387270
    104864 5onm:A (1.52) BS01 FE 4.2.1.108 GO:0016829 ... A0A1R1AV52 30674920
    104865 5onn:A (1.4) BS01 FE 4.2.1.108 GO:0016829 ... A0A1R1AV52 30674920
    104866 5ono:A (2.5) BS01 FE 4.2.1.108 GO:0016829 ... A0A1R1AV52 30674920
    104867 5onp:A (1.34) BS02 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    104868 5onp:A (1.34) BS03 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    104869 5onp:A (1.34) BS04 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    104870 5onq:A (1.17) BS02 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    104871 5onr:A (1.39) BS02 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    104872 5onr:A (1.39) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    104873 5onr:A (1.39) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    104874 5onr:A (1.39) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    104875 5onr:A (1.39) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30403288
    104876 5onx:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... O68601 29354268
    104877 5onx:A (1.6) BS02 CU 1.7.2.1 GO:0005507 ... O68601 29354268
    104878 5onx:A (1.6) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 29354268
    104879 5ony:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... O68601 29354268
    104880 5ony:A (1.6) BS02 CU 1.7.2.1 GO:0005507 ... O68601 29354268
    104881 5ool:0 (3.06) BS02 ZN ? GO:0003723 ... Q9BYC8 28892042
    104882 5ool:4 (3.06) BS02 ZN ? GO:0003735 ... Q9P0J6 28892042
    104883 5ool:o (3.06) BS02 MG ? GO:0003735 ... Q9BQC6 28892042
    104884 5ool:r (3.06) BS02 ZN ? GO:0003735 ... Q9NVS2 28892042
    104885 5oom:0 (3.03) BS02 ZN ? GO:0003723 ... Q9BYC8 28892042
    104886 5oom:r (3.03) BS02 ZN ? GO:0003735 ... Q9NVS2 28892042
    104887 5op6:A (2.45) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 29435217
    104888 5op8:A (2.3) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 29435217
    104889 5opc:A (2.3) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 29435217
    104890 5opf:A (1.081) BS01 CU ? N/A N/A 29222333
    104891 5opj:A (2.05) BS02 ZN ? GO:0005975 ... Q8AAW3 29255254
    104892 5opk:A (1.74) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 N/A P49902 29535428
    104893 5opl:A (1.8) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 29535428
    104894 5opm:A (1.68) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 N/A P49902 29535428
    104895 5opo:A (2.0) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 N/A P49902 29535428
    104896 5opz:A (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    104897 5opz:B (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    104898 5oq1:A (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    104899 5oq1:B (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    104900 5oqd:A (2.447) BS01 ZN ? N/A Q24459 29058710
    104901 5oqd:A (2.447) BS02 ZN ? N/A Q24459 29058710
    104902 5oqd:B (2.447) BS01 ZN ? N/A Q24459 29058710
    104903 5oqd:B (2.447) BS02 ZN ? N/A Q24459 29058710
    104904 5oqd:C (2.447) BS01 ZN ? N/A Q24459 29058710
    104905 5oqd:C (2.447) BS02 ZN ? N/A Q24459 29058710
    104906 5oqd:D (2.447) BS01 ZN ? N/A Q24459 29058710
    104907 5oqd:D (2.447) BS02 ZN ? N/A Q24459 29058710
    104908 5oqd:E (2.447) BS01 ZN ? N/A Q24459 29058710
    104909 5oqd:E (2.447) BS02 ZN ? N/A Q24459 29058710
    104910 5oqd:F (2.447) BS01 ZN ? N/A Q24459 29058710
    104911 5oqd:F (2.447) BS02 ZN ? N/A Q24459 29058710
    104912 5oqj:3 (4.7) BS01 ZN ? GO:0000993 ... Q03290 29088706
    104913 5oqj:3 (4.7) BS02 ZN ? GO:0000993 ... Q03290 29088706
    104914 5oqj:4 (4.7) BS01 ZN ? GO:0000112 ... Q12004 29088706
    104915 5oqj:6 (4.7) BS01 ZN ? GO:0000112 ... Q04673 29088706
    104916 5oqj:6 (4.7) BS02 ZN ? GO:0000112 ... Q04673 29088706
    104917 5oqj:A (4.7) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    104918 5oqj:A (4.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    104919 5oqj:A (4.7) BS04 MG 2.7.7.6 GO:0000428 ... P04050 29088706
    104920 5oqj:B (4.7) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 29088706
    104921 5oqj:C (4.7) BS01 ZN ? GO:0000428 ... P16370 29088706
    104922 5oqj:I (4.7) BS01 ZN ? GO:0000428 ... P27999 29088706
    104923 5oqj:I (4.7) BS02 ZN ? GO:0000428 ... P27999 29088706
    104924 5oqj:J (4.7) BS01 ZN ? GO:0000428 ... P22139 29088706
    104925 5oqj:M (4.7) BS01 ZN ? GO:0000993 ... P29055 29088706
    104926 5oqj:W (4.7) BS01 ZN ? GO:0006367 ... P36100 29088706
    104927 5oql:P (3.2) BS03 ZN ? GO:0004540 ... G0SE30 28967883
    104928 5oqm:3 (5.8) BS01 ZN ? GO:0000993 ... Q03290 29088706
    104929 5oqm:3 (5.8) BS02 ZN ? GO:0000993 ... Q03290 29088706
    104930 5oqm:4 (5.8) BS01 ZN ? GO:0000112 ... Q12004 29088706
    104931 5oqm:6 (5.8) BS01 ZN ? GO:0000112 ... Q04673 29088706
    104932 5oqm:6 (5.8) BS02 ZN ? GO:0000112 ... Q04673 29088706
    104933 5oqm:A (5.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    104934 5oqm:A (5.8) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    104935 5oqm:A (5.8) BS05 MG 2.7.7.6 GO:0000428 ... P04050 29088706
    104936 5oqm:B (5.8) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 29088706
    104937 5oqm:C (5.8) BS01 ZN ? GO:0000428 ... P16370 29088706
    104938 5oqm:I (5.8) BS01 ZN ? GO:0000428 ... P27999 29088706
    104939 5oqm:I (5.8) BS02 ZN ? GO:0000428 ... P27999 29088706
    104940 5oqm:J (5.8) BS01 ZN ? GO:0000428 ... P22139 29088706
    104941 5oqm:M (5.8) BS01 ZN ? GO:0000993 ... P29055 29088706
    104942 5oqm:W (5.8) BS01 ZN ? GO:0006367 ... P36100 29088706
    104943 5oqu:A (2.324) BS03 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104944 5oqw:A (2.31) BS01 ZN 2.3.2.27 N/A P98170 29695633
    104945 5oqw:B (2.31) BS01 ZN 2.3.2.27 N/A P98170 29695633
    104946 5or2:B (2.5) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    104947 5or2:B (2.5) BS02 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    104948 5or2:B (2.5) BS03 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    104949 5or3:A (1.795) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    104950 5or3:A (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104951 5or3:B (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104952 5or3:B (1.795) BS03 CU ? GO:0004097 ... Q2UNF9 29715329
    104953 5or3:C (1.795) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    104954 5or3:C (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104955 5or3:D (1.795) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    104956 5or3:D (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104957 5or4:A (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    104958 5or4:A (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104959 5or4:B (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    104960 5or4:B (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104961 5or4:C (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    104962 5or4:C (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104963 5or4:D (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    104964 5or4:D (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    104965 5or6:B (2.4) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    104966 5or6:B (2.4) BS02 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    104967 5or6:B (2.4) BS03 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    104968 5orj:A (1.99) BS01 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104969 5orj:A (1.99) BS02 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104970 5orj:A (1.99) BS03 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104971 5orj:B (1.99) BS01 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104972 5orj:B (1.99) BS02 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104973 5ork:A (2.143) BS02 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104974 5orl:A (1.69) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104975 5orn:A (2.19) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104976 5oro:A (2.12) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104977 5orp:A (2.19) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104978 5orr:A (2.09) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104979 5ors:A (1.98) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104980 5ort:A (2.56) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104981 5orv:A (1.88) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104982 5orw:A (2.0) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104983 5orx:A (1.88) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104984 5ory:A (1.99) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104985 5orz:A (1.92) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104986 5os0:A (1.74) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104987 5os1:A (1.9) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104988 5os2:A (1.92) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104989 5os3:A (1.81) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104990 5os4:A (1.88) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104991 5os5:A (1.74) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104992 5os6:A (2.2) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104993 5osd:A (1.99) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104994 5ose:A (1.9) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104995 5osf:A (1.89) BS02 MG 2.7.11.1 GO:0004672 ... O14965 29045126
    104996 5osk:C (2.11) BS02 CA 3.6.5.- GO:0000226 ... P81947 29227648
    104997 5osl:A (1.95) BS02 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    104998 5osq:A (2.05) BS03 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    104999 5osq:A (2.05) BS04 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    105000 5osq:A (2.05) BS05 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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