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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 1lin:A (2.0) BS04 CA ? GO:0000922 ... P62157 7634090
    8602 1lka:A (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 12198296
    8603 1lkb:A (1.7) BS02 NA 3.4.21.36 GO:0004252 ... P00772 12198296
    8604 1lkd:A (1.7) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    8605 1lkd:A (1.7) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    8606 1lkm:A (1.69) BS01 FE ? GO:0005506 ... P24931 12175244
    8607 1lkm:A (1.69) BS02 FE ? GO:0005506 ... P24931 12175244
    8608 1lkm:A (1.69) BS03 FE ? GO:0005506 ... P24931 12175244
    8609 1lko:A (1.63) BS01 FE2 ? GO:0005506 ... P24931 12175244
    8610 1lko:A (1.63) BS02 FE2 ? GO:0005506 ... P24931 12175244
    8611 1lko:A (1.63) BS03 FE2 ? GO:0005506 ... P24931 12175244
    8612 1lkp:A (1.64) BS03 FE2 ? GO:0005506 ... P24931 12175244
    8613 1lkp:A (1.64) BS04 FE2 ? GO:0005506 ... P24931 12175244
    8614 1lkp:A (1.64) BS05 FE2 ? GO:0005506 ... P24931 12175244
    8615 1lkx:A (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    8616 1lkx:B (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    8617 1lkx:C (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    8618 1lkx:D (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    8619 1ll1:A (2.55) BS01 CU ? GO:0005344 ... P04253 N/A
    8620 1ll1:A (2.55) BS02 CU ? GO:0005344 ... P04253 N/A
    8621 1ll2:A (1.9) BS01 MN 2.4.1.186 GO:0005737 ... P13280 12051921
    8622 1lla:A (2.18) BS01 CU ? GO:0005344 ... P04253 8518732
    8623 1lla:A (2.18) BS02 CU ? GO:0005344 ... P04253 8518732
    8624 1llm:C (1.5) BS03 ZN ? GO:0003700 ... P03069
    P08046
    14621985
    8625 1llm:C (1.5) BS04 ZN ? GO:0003700 ... P03069
    P08046
    14621985
    8626 1llm:D (1.5) BS03 ZN ? GO:0003700 ... P03069
    P08046
    14621985
    8627 1llm:D (1.5) BS04 ZN ? GO:0003700 ... P03069
    P08046
    14621985
    8628 1llp:A (1.7) BS02 CA 1.11.1.14 GO:0000302 ... P49012 10024453
    8629 1llp:A (1.7) BS03 CA 1.11.1.14 GO:0000302 ... P49012 10024453
    8630 1llu:A (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8631 1llu:A (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8632 1llu:B (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8633 1llu:B (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8634 1llu:C (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8635 1llu:C (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8636 1llu:D (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8637 1llu:D (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8638 1llu:E (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8639 1llu:E (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8640 1llu:F (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8641 1llu:F (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8642 1llu:G (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8643 1llu:G (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8644 1llu:H (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8645 1llu:H (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    8646 1lm3:B (2.7) BS01 MG ? GO:0005506 ... P0ABE7 11914078
    8647 1lm4:A (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    8648 1lm4:B (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    8649 1lm6:A (1.75) BS01 FE 3.5.1.88 GO:0006412 ... Q9F2F0 12823970
    8650 1lmh:A (1.9) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12048187
    8651 1lmj:A (-1.00) BS01 CA ? GO:0005509 ... P35555 12511552
    8652 1lmj:A (-1.00) BS02 CA ? GO:0005509 ... P35555 12511552
    8653 1lml:A (1.86) BS01 ZN 3.4.24.36 GO:0004222 ... P08148 9739094
    8654 1ln8:A (1.65) BS01 CA 3.1.1.4 GO:0004623 ... P60045 N/A
    8655 1lna:E (1.9) BS03 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    8656 1lna:E (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8657 1lna:E (1.9) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8658 1lna:E (1.9) BS06 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    8659 1lna:E (1.9) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8660 1lnb:E (1.8) BS02 FE 3.4.24.27 GO:0004222 ... P00800 8535232
    8661 1lnb:E (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8662 1lnb:E (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8663 1lnb:E (1.8) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8664 1lnb:E (1.8) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8665 1lnc:E (1.8) BS02 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    8666 1lnc:E (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8667 1lnc:E (1.8) BS04 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    8668 1lnc:E (1.8) BS05 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    8669 1lnc:E (1.8) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8670 1lnd:E (1.7) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    8671 1lnd:E (1.7) BS04 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    8672 1lnd:E (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8673 1lnd:E (1.7) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8674 1lnd:E (1.7) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8675 1lnd:E (1.7) BS08 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8676 1lne:E (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8677 1lne:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8678 1lnf:E (1.7) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    8679 1lnf:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8680 1lnf:E (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8681 1lnf:E (1.7) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8682 1lnf:E (1.7) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    8683 1lnh:A (2.6) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 9294864
    8684 1lnl:A (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    8685 1lnl:A (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    8686 1lnl:B (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    8687 1lnl:B (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    8688 1lnl:B (3.3) BS03 CU ? GO:0005344 ... P83040 12767214
    8689 1lnl:C (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    8690 1lnl:C (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    8691 1lnl:C (3.3) BS03 CU ? GO:0005344 ... P83040 12767214
    8692 1lnq:A (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8693 1lnq:B (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8694 1lnq:C (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8695 1lnq:D (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8696 1lnq:E (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8697 1lnq:F (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8698 1lnq:G (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8699 1lnq:H (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    8700 1lny:A (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    8701 1lny:B (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    8702 1lnz:A (2.6) BS01 MG 3.6.5.- GO:0000287 ... P20964 12429099
    8703 1lo1:A (-1.00) BS03 ZN ? GO:0003700 ... O95718 12654265
    8704 1lo1:A (-1.00) BS04 ZN ? GO:0003700 ... O95718 12654265
    8705 1loa:A (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    8706 1loa:A (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    8707 1loa:C (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    8708 1loa:C (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    8709 1loa:E (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    8710 1loa:G (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    8711 1loa:G (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    8712 1lob:A (2.0) BS01 CA ? GO:0005515 ... P04122 2091026
    8713 1lob:A (2.0) BS02 MN ? GO:0005515 ... P04122 2091026
    8714 1lob:C (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    8715 1lob:C (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    8716 1lob:E (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    8717 1lob:E (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    8718 1lob:G (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    8719 1lob:G (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    8720 1loc:A (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    8721 1loc:A (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    8722 1loc:C (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    8723 1loc:C (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    8724 1loc:E (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    8725 1loc:E (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    8726 1loc:G (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    8727 1loc:G (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    8728 1lod:A (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    8729 1lod:A (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    8730 1lod:C (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    8731 1lod:C (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    8732 1lod:E (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    8733 1lod:E (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    8734 1lod:G (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    8735 1lod:G (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    8736 1loe:A (1.9) BS01 CA ? GO:0005515 ... P04122 2380988
    8737 1loe:A (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    8738 1loe:C (1.9) BS01 CA ? GO:0005515 ... P04122 2380988
    8739 1loe:C (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    8740 1lof:A (2.3) BS02 CA ? GO:0005515 ... P04122 1730588
    8741 1lof:A (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    8742 1lof:C (2.3) BS02 CA ? GO:0005515 ... P04122 1730588
    8743 1lof:C (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    8744 1log:A (2.1) BS02 CA ? GO:0005515 ... P04122 2211692
    8745 1log:A (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    8746 1log:C (2.1) BS02 CA ? GO:0005515 ... P04122 2211692
    8747 1log:C (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    8748 1lok:A (1.2) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 12176384
    8749 1lok:A (1.2) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 12176384
    8750 1lok:A (1.2) BS03 NA 3.4.11.10 GO:0006508 ... Q01693 12176384
    8751 1lom:A (1.72) BS01 CA ? GO:0030246 ... P81180 12054761
    8752 1lon:A (2.1) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    8753 1lox:A (2.4) BS01 FE2 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33
    GO:0001503 ... P12530 9406550
    8754 1lp1:B (2.3) BS01 MG ? GO:0019865 ... P38507 12604795
    8755 1lp4:A (1.86) BS01 MG 2.7.11.1 GO:0004672 ... P28523 15740749
    8756 1lpa:B (3.04) BS01 CA 3.1.1.3 GO:0004806 ... P16233 8479519
    8757 1lpb:B (2.46) BS01 CA 3.1.1.3 GO:0004806 ... P16233 7893686
    8758 1lpg:B (2.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    8759 1lpi:A (2.0) BS01 NA 3.2.1.17 GO:0003796 ... P00698 9828016
    8760 1lpk:B (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    8761 1lpv:A (-1.00) BS01 ZN ? GO:0005634 ... P23023 10898790
    8762 1lpv:A (-1.00) BS02 ZN ? GO:0005634 ... P23023 10898790
    8763 1lpz:B (2.4) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    8764 1lqd:B (2.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    8765 1lqe:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00760 12061878
    8766 1lqk:A (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    8767 1lqk:B (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    8768 1lqo:A (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    8769 1lqo:B (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    8770 1lqp:A (1.19) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    8771 1lqp:B (1.19) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    8772 1lqv:C (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8773 1lqv:C (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8774 1lqv:C (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8775 1lqv:C (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8776 1lqv:C (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8777 1lqv:C (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8778 1lqv:D (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8779 1lqv:D (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8780 1lqv:D (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8781 1lqv:D (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8782 1lqv:D (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8783 1lqv:D (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    8784 1lqw:A (1.87) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12126617
    8785 1lqw:B (1.87) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12126617
    8786 1lr5:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8787 1lr5:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8788 1lr5:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8789 1lr5:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8790 1lrh:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8791 1lrh:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8792 1lrh:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8793 1lrh:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    8794 1lrm:A (2.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 N/A
    8795 1lru:A (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    8796 1lru:B (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    8797 1lru:C (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    8798 1lrw:A (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    8799 1lrw:C (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    8800 1lry:A (2.6) BS01 ZN 3.5.1.88 GO:0006412 ... Q9I7A8 12126617

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417