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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8001 1kr3:A (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    8002 1kr3:B (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    8003 1kr3:B (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    8004 1kr6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8005 1kr6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8006 1kr6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8007 1kr6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8008 1kr6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    8009 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    8010 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    8011 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    8012 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    8013 1krj:A (2.0) BS01 K 1.11.1.5 GO:0004601 ... P00431 10608846
    8014 1krm:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 12554940
    8015 1kro:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8016 1kro:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8017 1kro:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8018 1kro:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8019 1kro:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    8020 1krp:A (2.2) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    8021 1krp:A (2.2) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    8022 1ks4:A (2.5) BS01 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    8023 1ks4:A (2.5) BS02 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    8024 1ks4:A (2.5) BS03 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    8025 1ks7:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8026 1ks7:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8027 1ks7:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8028 1ks7:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8029 1ks7:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    8030 1ksc:A (1.55) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    8031 1ksd:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    8032 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    8033 1ksg:A (2.3) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    8034 1ksh:A (1.8) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    8035 1ksi:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    8036 1ksi:A (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    8037 1ksi:B (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    8038 1ksi:B (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    8039 1ksj:A (2.6) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    8040 1ksn:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12039587
    8041 1ksp:A (2.3) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    8042 1ksp:A (2.3) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    8043 1kss:A (1.8) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    8044 1ksu:A (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    8045 1ksu:B (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    8046 1ksz:A (2.8) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9182542
    8047 1ktg:A (1.8) BS02 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    8048 1ktg:A (1.8) BS03 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    8049 1ktg:B (1.8) BS02 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    8050 1ktg:B (1.8) BS03 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    8051 1kto:A (1.9) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8052 1kto:A (1.9) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8053 1kto:A (1.9) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8054 1kto:A (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    8055 1kto:A (1.9) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    8056 1ktw:A (2.0) BS07 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8057 1ktw:A (2.0) BS08 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8058 1ktw:A (2.0) BS09 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8059 1ktw:A (2.0) BS10 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8060 1ktw:B (2.0) BS01 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8061 1ktw:B (2.0) BS02 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8062 1ktw:B (2.0) BS03 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8063 1ktw:B (2.0) BS04 CA 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    8064 1ku0:A (2.0) BS01 ZN 3.1.1.3 GO:0004806 ... O66015 11859083
    8065 1ku0:A (2.0) BS02 CA 3.1.1.3 GO:0004806 ... O66015 11859083
    8066 1ku0:B (2.0) BS01 ZN 3.1.1.3 GO:0004806 ... O66015 11859083
    8067 1ku0:B (2.0) BS02 CA 3.1.1.3 GO:0004806 ... O66015 11859083
    8068 1kuf:A (1.35) BS01 CD 3.4.24.- GO:0004222 ... O57413 12077431
    8069 1kuf:A (1.35) BS02 CD 3.4.24.- GO:0004222 ... O57413 12077431
    8070 1kuf:A (1.35) BS03 CD 3.4.24.- GO:0004222 ... O57413 12077431
    8071 1kuh:A (1.6) BS01 ZN 3.4.24.77 GO:0004222 ... P56406 9089404
    8072 1kuh:A (1.6) BS02 CA 3.4.24.77 GO:0004222 ... P56406 9089404
    8073 1kv7:A (1.4) BS01 CU 1.16.3.4 GO:0004322 ... P36649 11867755
    8074 1kv7:A (1.4) BS02 CU 1.16.3.4 GO:0004322 ... P36649 11867755
    8075 1kv8:A (1.62) BS02 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    8076 1kv9:A (1.9) BS01 CA 1.1.9.1 GO:0005509 ... Q8GR64 12057198
    8077 1kvj:A (-1.00) BS01 CU1 7.2.2.8 GO:0005507 ... Q04656 16211579
    8078 1kvk:A (2.4) BS01 MG 2.7.1.36 GO:0000287 ... P17256 11877411
    8079 1kvo:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8080 1kvo:A (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8081 1kvo:B (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8082 1kvo:B (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8083 1kvo:C (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8084 1kvo:C (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8085 1kvo:D (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8086 1kvo:D (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8087 1kvo:E (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8088 1kvo:E (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8089 1kvo:F (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8090 1kvo:F (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    8091 1kvw:A (1.95) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    8092 1kvx:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    8093 1kvy:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    8094 1kw0:A (2.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 12126628
    8095 1kw1:A (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    8096 1kw1:B (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    8097 1kw3:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    8098 1kw6:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    8099 1kw8:B (2.0) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    8100 1kw9:B (1.95) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    8101 1kwg:A (1.6) BS01 ZN 3.2.1.23 GO:0004565 ... O69315 12215416
    8102 1kwh:A (2.0) BS01 CA ? GO:0042597 ... Q9KWT5 11884143
    8103 1kwk:A (2.2) BS02 ZN 3.2.1.23 GO:0004565 ... O69315 12215416
    8104 1kwm:A (1.6) BS01 ZN 3.4.17.2 GO:0004180 ... P15086 12162965
    8105 1kwm:B (1.6) BS01 ZN 3.4.17.2 GO:0004180 ... P15086 12162965
    8106 1kwo:A (3.8) BS01 MG ? GO:0003774 ... P24733 12297624
    8107 1kwo:B (3.8) BS01 MG ? GO:0005509 ... P13543 12297624
    8108 1kwo:C (3.8) BS01 CA ? GO:0005509 ... P07291 12297624
    8109 1kwq:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 12166932
    8110 1kwr:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 12166932
    8111 1kws:A (2.1) BS01 MN 2.4.1.135 GO:0015018 ... O94766 11950836
    8112 1kwt:A (1.95) BS01 CA ? N/A P19999 11850428
    8113 1kwt:A (1.95) BS02 CA ? N/A P19999 11850428
    8114 1kwt:A (1.95) BS03 CA ? N/A P19999 11850428
    8115 1kwt:B (1.95) BS01 CA ? N/A P19999 11850428
    8116 1kwt:B (1.95) BS02 CA ? N/A P19999 11850428
    8117 1kwt:B (1.95) BS03 CA ? N/A P19999 11850428
    8118 1kwt:C (1.95) BS01 CA ? N/A P19999 11850428
    8119 1kwt:C (1.95) BS02 CA ? N/A P19999 11850428
    8120 1kwt:C (1.95) BS03 CA ? N/A P19999 11850428
    8121 1kwu:A (1.95) BS02 CA ? N/A P19999 11850428
    8122 1kwu:A (1.95) BS03 CA ? N/A P19999 11850428
    8123 1kwu:A (1.95) BS04 CA ? N/A P19999 11850428
    8124 1kwu:B (1.95) BS02 CA ? N/A P19999 11850428
    8125 1kwu:B (1.95) BS03 CA ? N/A P19999 11850428
    8126 1kwu:B (1.95) BS04 CA ? N/A P19999 11850428
    8127 1kwu:C (1.95) BS02 CA ? N/A P19999 11850428
    8128 1kwu:C (1.95) BS03 CA ? N/A P19999 11850428
    8129 1kwu:C (1.95) BS04 CA ? N/A P19999 11850428
    8130 1kwv:A (2.0) BS01 CA ? N/A P19999 11850428
    8131 1kwv:A (2.0) BS02 CA ? N/A P19999 11850428
    8132 1kwv:A (2.0) BS03 CA ? N/A P19999 11850428
    8133 1kwv:B (2.0) BS01 CA ? N/A P19999 11850428
    8134 1kwv:B (2.0) BS02 CA ? N/A P19999 11850428
    8135 1kwv:B (2.0) BS03 CA ? N/A P19999 11850428
    8136 1kwv:C (2.0) BS01 CA ? N/A P19999 11850428
    8137 1kwv:C (2.0) BS02 CA ? N/A P19999 11850428
    8138 1kwv:C (2.0) BS03 CA ? N/A P19999 11850428
    8139 1kww:A (1.9) BS02 CA ? N/A P19999 11850428
    8140 1kww:A (1.9) BS03 CA ? N/A P19999 11850428
    8141 1kww:A (1.9) BS04 CA ? N/A P19999 11850428
    8142 1kww:B (1.9) BS02 CA ? N/A P19999 11850428
    8143 1kww:B (1.9) BS03 CA ? N/A P19999 11850428
    8144 1kww:B (1.9) BS04 CA ? N/A P19999 11850428
    8145 1kww:C (1.9) BS02 CA ? N/A P19999 11850428
    8146 1kww:C (1.9) BS03 CA ? N/A P19999 11850428
    8147 1kww:C (1.9) BS04 CA ? N/A P19999 11850428
    8148 1kwx:A (2.0) BS02 CA ? N/A P19999 11850428
    8149 1kwx:A (2.0) BS03 CA ? N/A P19999 11850428
    8150 1kwx:A (2.0) BS04 CA ? N/A P19999 11850428
    8151 1kwx:B (2.0) BS02 CA ? N/A P19999 11850428
    8152 1kwx:B (2.0) BS03 CA ? N/A P19999 11850428
    8153 1kwx:B (2.0) BS04 CA ? N/A P19999 11850428
    8154 1kwx:C (2.0) BS02 CA ? N/A P19999 11850428
    8155 1kwx:C (2.0) BS03 CA ? N/A P19999 11850428
    8156 1kwx:C (2.0) BS04 CA ? N/A P19999 11850428
    8157 1kwy:A (2.0) BS02 CA ? N/A P19999 11850428
    8158 1kwy:A (2.0) BS03 CA ? N/A P19999 11850428
    8159 1kwy:A (2.0) BS04 CA ? N/A P19999 11850428
    8160 1kwy:B (2.0) BS02 CA ? N/A P19999 11850428
    8161 1kwy:B (2.0) BS03 CA ? N/A P19999 11850428
    8162 1kwy:B (2.0) BS04 CA ? N/A P19999 11850428
    8163 1kwy:C (2.0) BS02 CA ? N/A P19999 11850428
    8164 1kwy:C (2.0) BS03 CA ? N/A P19999 11850428
    8165 1kwy:C (2.0) BS04 CA ? N/A P19999 11850428
    8166 1kwz:A (1.9) BS02 CA ? N/A P19999 11850428
    8167 1kwz:A (1.9) BS03 CA ? N/A P19999 11850428
    8168 1kwz:A (1.9) BS04 CA ? N/A P19999 11850428
    8169 1kwz:B (1.9) BS02 CA ? N/A P19999 11850428
    8170 1kwz:B (1.9) BS03 CA ? N/A P19999 11850428
    8171 1kwz:B (1.9) BS04 CA ? N/A P19999 11850428
    8172 1kwz:C (1.9) BS02 CA ? N/A P19999 11850428
    8173 1kwz:C (1.9) BS03 CA ? N/A P19999 11850428
    8174 1kwz:C (1.9) BS04 CA ? N/A P19999 11850428
    8175 1kx0:A (2.0) BS02 CA ? N/A P19999 11850428
    8176 1kx0:A (2.0) BS03 CA ? N/A P19999 11850428
    8177 1kx0:A (2.0) BS04 CA ? N/A P19999 11850428
    8178 1kx0:B (2.0) BS02 CA ? N/A P19999 11850428
    8179 1kx0:B (2.0) BS03 CA ? N/A P19999 11850428
    8180 1kx0:B (2.0) BS04 CA ? N/A P19999 11850428
    8181 1kx0:C (2.0) BS02 CA ? N/A P19999 11850428
    8182 1kx0:C (2.0) BS03 CA ? N/A P19999 11850428
    8183 1kx0:C (2.0) BS04 CA ? N/A P19999 11850428
    8184 1kx1:A (2.8) BS01 CA ? N/A P19999 11850428
    8185 1kx1:A (2.8) BS02 CA ? N/A P19999 11850428
    8186 1kx1:A (2.8) BS03 CA ? N/A P19999 11850428
    8187 1kx1:B (2.8) BS02 CA ? N/A P19999 11850428
    8188 1kx1:B (2.8) BS03 CA ? N/A P19999 11850428
    8189 1kx1:B (2.8) BS04 CA ? N/A P19999 11850428
    8190 1kx1:C (2.8) BS02 CA ? N/A P19999 11850428
    8191 1kx1:C (2.8) BS03 CA ? N/A P19999 11850428
    8192 1kx1:C (2.8) BS04 CA ? N/A P19999 11850428
    8193 1kx1:D (2.8) BS01 CA ? N/A P19999 11850428
    8194 1kx1:D (2.8) BS02 CA ? N/A P19999 11850428
    8195 1kx1:D (2.8) BS03 CA ? N/A P19999 11850428
    8196 1kx1:E (2.8) BS02 CA ? N/A P19999 11850428
    8197 1kx1:E (2.8) BS03 CA ? N/A P19999 11850428
    8198 1kx1:E (2.8) BS04 CA ? N/A P19999 11850428
    8199 1kx1:F (2.8) BS02 CA ? N/A P19999 11850428
    8200 1kx1:F (2.8) BS03 CA ? N/A P19999 11850428

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417