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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 1k1y:A (2.4) BS04 CA 2.4.1.25 GO:0003824 ... O32462 12618437
    7402 1k1y:B (2.4) BS02 CA 2.4.1.25 GO:0003824 ... O32462 12618437
    7403 1k20:A (1.5) BS01 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    7404 1k20:A (1.5) BS02 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    7405 1k20:B (1.5) BS01 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    7406 1k20:B (1.5) BS02 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    7407 1k21:H (1.86) BS03 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    7408 1k21:H (1.86) BS04 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    7409 1k22:H (1.93) BS03 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    7410 1k22:H (1.93) BS04 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    7411 1k23:A (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7412 1k23:A (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7413 1k23:B (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7414 1k23:B (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7415 1k23:C (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7416 1k23:C (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7417 1k23:D (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7418 1k23:D (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    7419 1k24:A (2.03) BS01 ZN ? GO:0004190 ... Q51227 11891340
    7420 1k24:A (2.03) BS02 ZN ? GO:0004190 ... Q51227 11891340
    7421 1k24:A (2.03) BS03 ZN ? GO:0004190 ... Q51227 11891340
    7422 1k26:A (1.85) BS01 IR3 ? GO:0016787 ... Q8ZTD8 11914479
    7423 1k2f:A (2.6) BS01 ZN 2.3.2.27 GO:0005737 ... P61092 11742346
    7424 1k2f:A (2.6) BS02 ZN 2.3.2.27 GO:0005737 ... P61092 11742346
    7425 1k2f:A (2.6) BS03 ZN 2.3.2.27 GO:0005737 ... P61092 11742346
    7426 1k2f:A (2.6) BS04 ZN 2.3.2.27 GO:0005737 ... P61092 11742346
    7427 1k2f:B (2.6) BS01 ZN 2.3.2.27 GO:0005737 ... P61092 11742346
    7428 1k2f:B (2.6) BS02 ZN 2.3.2.27 GO:0005737 ... P61092 11742346
    7429 1k2r:A (2.15) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7430 1k2r:B (2.15) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7431 1k2s:A (2.55) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7432 1k2s:B (2.55) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7433 1k2t:A (2.2) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7434 1k2t:B (2.2) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7435 1k2u:A (2.2) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7436 1k2u:B (2.2) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    7437 1k2y:X (1.75) BS01 ZN 5.4.2.2
    5.4.2.8
    GO:0000287 ... P26276 11839312
    7438 1k35:A (2.2) BS01 ZN 5.4.2.2
    5.4.2.8
    GO:0000287 ... P26276 11839312
    7439 1k3i:A (1.4) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 11698678
    7440 1k3i:A (1.4) BS03 CA 1.1.3.9 GO:0005576 ... P0CS93 11698678
    7441 1k3w:A (1.42) BS03 ZN 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 11847126
    7442 1k3x:A (1.25) BS03 ZN 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 11847126
    7443 1k4g:A (1.7) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 11921407
    7444 1k4h:A (1.8) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 11921407
    7445 1k4i:A (0.98) BS03 MG 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    7446 1k4l:A (1.6) BS03 MN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    7447 1k4o:A (1.1) BS02 MN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    7448 1k4p:A (1.0) BS02 ZN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    7449 1k4p:A (1.0) BS03 ZN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    7450 1k4p:A (1.0) BS04 ZN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    7451 1k4v:A (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    7452 1k4v:B (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    7453 1k51:A (1.8) BS01 ZN ? N/A Q51912 11709166
    7454 1k51:A (1.8) BS02 ZN ? N/A Q51912 11709166
    7455 1k52:A (1.8) BS01 ZN ? N/A Q51912 11709166
    7456 1k52:A (1.8) BS02 ZN ? N/A Q51912 11709166
    7457 1k52:B (1.8) BS01 ZN ? N/A Q51912 11709166
    7458 1k53:A (2.1) BS01 ZN ? N/A Q51912 11709166
    7459 1k53:A (2.1) BS02 ZN ? N/A Q51912 11709166
    7460 1k53:B (2.1) BS01 ZN ? N/A Q51912 11709166
    7461 1k5d:A (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7462 1k5d:D (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7463 1k5d:G (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7464 1k5d:J (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7465 1k5g:A (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7466 1k5g:D (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7467 1k5g:G (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7468 1k5g:J (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    7469 1k5q:B (2.34) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    7470 1k5s:B (2.43) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    7471 1k5w:A (-1.00) BS01 CA ? GO:0016020 ... P21707 11754837
    7472 1k5w:A (-1.00) BS02 CA ? GO:0016020 ... P21707 11754837
    7473 1k68:A (1.9) BS01 MG ? GO:0000160 ... Q8RTN0 15240481
    7474 1k68:B (1.9) BS01 MG ? GO:0000160 ... Q8RTN0 15240481
    7475 1k6d:B (1.9) BS01 MG 2.8.3.8 GO:0005737 ... P76458 12454473
    7476 1k6l:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    7477 1k6l:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    7478 1k6n:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    7479 1k6n:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    7480 1k6s:A (2.03) BS01 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    7481 1k6s:A (2.03) BS02 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    7482 1k6s:B (2.03) BS01 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    7483 1k6w:A (1.75) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    7484 1k6y:A (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    7485 1k6y:B (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    7486 1k6y:C (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    7487 1k6y:D (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    7488 1k70:A (1.8) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    7489 1k72:A (1.8) BS03 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    7490 1k72:A (1.8) BS04 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    7491 1k72:B (1.8) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    7492 1k72:B (1.8) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    7493 1k73:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    7494 1k73:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    7495 1k73:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    7496 1k73:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    7497 1k77:A (1.63) BS01 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    7498 1k77:A (1.63) BS02 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    7499 1k7d:B (2.15) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    7500 1k7g:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7501 1k7g:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7502 1k7g:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7503 1k7g:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7504 1k7g:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7505 1k7g:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7506 1k7g:A (2.0) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    7507 1k7g:A (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7508 1k7h:A (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    7509 1k7h:A (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    7510 1k7h:A (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    7511 1k7h:B (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    7512 1k7h:B (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    7513 1k7h:B (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    7514 1k7i:A (1.59) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7515 1k7i:A (1.59) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7516 1k7i:A (1.59) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7517 1k7i:A (1.59) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7518 1k7i:A (1.59) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7519 1k7i:A (1.59) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7520 1k7i:A (1.59) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    7521 1k7i:A (1.59) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7522 1k7q:A (1.8) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7523 1k7q:A (1.8) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7524 1k7q:A (1.8) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7525 1k7q:A (1.8) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7526 1k7q:A (1.8) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7527 1k7q:A (1.8) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7528 1k7q:A (1.8) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    7529 1k7q:A (1.8) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    7530 1k81:A (-1.00) BS01 ZN ? GO:0003743 ... Q57562 11980477
    7531 1k82:A (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    7532 1k82:B (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    7533 1k82:C (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    7534 1k82:D (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    7535 1k83:A (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    7536 1k83:A (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    7537 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0000428 ... P04050 11805306
    7538 1k83:B (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 11805306
    7539 1k83:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11805306
    7540 1k83:I (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    7541 1k83:I (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    7542 1k83:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11805306
    7543 1k83:L (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11805306
    7544 1k8a:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    7545 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    7546 1k8a:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    7547 1k8a:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    7548 1k8r:A (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11709168
    7549 1k90:D (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    7550 1k90:D (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    7551 1k90:E (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    7552 1k90:E (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    7553 1k90:F (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    7554 1k90:F (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    7555 1k93:D (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    7556 1k93:D (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    7557 1k93:E (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    7558 1k93:E (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    7559 1k93:F (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    7560 1k93:F (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    7561 1k94:A (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    7562 1k94:A (1.7) BS02 CA ? GO:0005509 ... P28676 11717497
    7563 1k94:B (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    7564 1k96:A (1.44) BS01 CA ? GO:0001726 ... P06703 11937060
    7565 1k96:A (1.44) BS02 CA ? GO:0001726 ... P06703 11937060
    7566 1k9i:A (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7567 1k9i:A (2.5) BS04 CA ? N/A Q9NNX6 11739956
    7568 1k9i:A (2.5) BS05 CA ? N/A Q9NNX6 11739956
    7569 1k9i:B (2.5) BS01 CA ? N/A Q9NNX6 11739956
    7570 1k9i:B (2.5) BS02 CA ? N/A Q9NNX6 11739956
    7571 1k9i:B (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7572 1k9i:C (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7573 1k9i:C (2.5) BS04 CA ? N/A Q9NNX6 11739956
    7574 1k9i:C (2.5) BS05 CA ? N/A Q9NNX6 11739956
    7575 1k9i:D (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7576 1k9i:D (2.5) BS04 CA ? N/A Q9NNX6 11739956
    7577 1k9i:D (2.5) BS05 CA ? N/A Q9NNX6 11739956
    7578 1k9i:E (2.5) BS02 CA ? N/A Q9NNX6 11739956
    7579 1k9i:E (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7580 1k9i:E (2.5) BS04 CA ? N/A Q9NNX6 11739956
    7581 1k9i:F (2.5) BS01 CA ? N/A Q9NNX6 11739956
    7582 1k9i:F (2.5) BS02 CA ? N/A Q9NNX6 11739956
    7583 1k9i:F (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7584 1k9i:G (2.5) BS01 CA ? N/A Q9NNX6 11739956
    7585 1k9i:G (2.5) BS02 CA ? N/A Q9NNX6 11739956
    7586 1k9i:G (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7587 1k9i:H (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7588 1k9i:H (2.5) BS04 CA ? N/A Q9NNX6 11739956
    7589 1k9i:H (2.5) BS05 CA ? N/A Q9NNX6 11739956
    7590 1k9i:I (2.5) BS01 CA ? N/A Q9NNX6 11739956
    7591 1k9i:I (2.5) BS02 CA ? N/A Q9NNX6 11739956
    7592 1k9i:I (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7593 1k9i:J (2.5) BS01 CA ? N/A Q9NNX6 11739956
    7594 1k9i:J (2.5) BS02 CA ? N/A Q9NNX6 11739956
    7595 1k9i:J (2.5) BS03 CA ? N/A Q9NNX6 11739956
    7596 1k9j:A (1.9) BS03 CA ? N/A Q9H2X3 11739956
    7597 1k9j:A (1.9) BS04 CA ? N/A Q9H2X3 11739956
    7598 1k9j:A (1.9) BS05 CA ? N/A Q9H2X3 11739956
    7599 1k9k:A (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    7600 1k9k:A (1.76) BS02 CA ? GO:0001726 ... P06703 11937060

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218