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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7201 1jyv:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7202 1jyv:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7203 1jyv:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7204 1jyv:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7205 1jyv:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7206 1jyv:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7207 1jyw:A (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7208 1jyw:A (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7209 1jyw:B (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7210 1jyw:B (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7211 1jyw:C (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7212 1jyw:C (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7213 1jyw:D (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7214 1jyw:D (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7215 1jyx:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7216 1jyx:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7217 1jyx:A (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7218 1jyx:A (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7219 1jyx:A (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7220 1jyx:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7221 1jyx:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7222 1jyx:B (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7223 1jyx:B (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7224 1jyx:B (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7225 1jyx:B (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7226 1jyx:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7227 1jyx:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7228 1jyx:C (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7229 1jyx:C (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7230 1jyx:C (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7231 1jyx:C (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7232 1jyx:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7233 1jyx:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7234 1jyx:D (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7235 1jyx:D (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7236 1jyx:D (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7237 1jz2:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7238 1jz2:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7239 1jz2:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7240 1jz2:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7241 1jz2:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7242 1jz2:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7243 1jz2:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7244 1jz2:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7245 1jz2:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7246 1jz2:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7247 1jz2:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7248 1jz2:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7249 1jz2:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7250 1jz2:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7251 1jz2:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7252 1jz2:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7253 1jz2:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7254 1jz2:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7255 1jz2:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7256 1jz2:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7257 1jz3:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7258 1jz3:A (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7259 1jz3:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7260 1jz3:B (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7261 1jz3:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7262 1jz3:C (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7263 1jz3:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7264 1jz3:D (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7265 1jz4:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7266 1jz4:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7267 1jz4:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7268 1jz4:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7269 1jz4:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7270 1jz4:A (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7271 1jz4:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7272 1jz4:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7273 1jz4:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7274 1jz4:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7275 1jz4:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7276 1jz4:B (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7277 1jz4:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7278 1jz4:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7279 1jz4:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7280 1jz4:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7281 1jz4:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7282 1jz4:C (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7283 1jz4:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7284 1jz4:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7285 1jz4:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7286 1jz4:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7287 1jz4:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7288 1jz5:A (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7289 1jz5:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7290 1jz5:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7291 1jz5:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7292 1jz5:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7293 1jz5:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7294 1jz5:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7295 1jz5:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7296 1jz6:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7297 1jz6:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7298 1jz6:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7299 1jz6:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7300 1jz6:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7301 1jz6:A (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7302 1jz6:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7303 1jz6:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7304 1jz6:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7305 1jz6:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7306 1jz6:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7307 1jz6:B (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7308 1jz6:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7309 1jz6:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7310 1jz6:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7311 1jz6:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7312 1jz6:C (2.1) BS06 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7313 1jz6:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7314 1jz6:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7315 1jz6:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7316 1jz6:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7317 1jz6:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7318 1jz7:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7319 1jz7:A (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7320 1jz7:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7321 1jz7:B (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7322 1jz7:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7323 1jz7:C (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7324 1jz7:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7325 1jz7:D (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7326 1jz8:A (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7327 1jz8:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7328 1jz8:B (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7329 1jz8:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7330 1jz8:C (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7331 1jz8:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7332 1jz8:D (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7333 1jz8:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7334 1jze:A (1.6) BS01 CU ? GO:0005507 ... P00282 11716717
    7335 1jzf:A (1.5) BS01 CU ? GO:0005507 ... P00282 11716717
    7336 1jzg:A (1.4) BS01 CU1 ? GO:0005507 ... P00282 11716717
    7337 1jzh:A (1.7) BS01 CU ? GO:0005507 ... P00282 11716717
    7338 1jzi:A (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    7339 1jzi:B (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    7340 1jzj:A (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    7341 1jzj:B (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    7342 1jzn:A (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    7343 1jzn:B (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    7344 1jzn:C (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    7345 1jzn:D (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    7346 1jzn:E (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    7347 1jzq:A (3.0) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    7348 1jzq:A (3.0) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    7349 1jzs:A (2.5) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    7350 1jzs:A (2.5) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    7351 1k07:A (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    7352 1k07:A (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    7353 1k07:B (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    7354 1k07:B (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    7355 1k0v:A (-1.00) BS01 CU1 ? GO:0005507 ... O32221 11747441
    7356 1k0w:A (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    7357 1k0w:B (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    7358 1k0w:C (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    7359 1k0w:D (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    7360 1k0w:E (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    7361 1k0w:F (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    7362 1k12:A (1.9) BS02 CA ? GO:0001868 ... Q7SIC1 12091873
    7363 1k1d:A (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7364 1k1d:A (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7365 1k1d:B (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7366 1k1d:B (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7367 1k1d:C (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7368 1k1d:C (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7369 1k1d:D (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7370 1k1d:D (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7371 1k1d:E (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7372 1k1d:E (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7373 1k1d:F (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7374 1k1d:F (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7375 1k1d:G (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7376 1k1d:G (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7377 1k1d:H (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7378 1k1d:H (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    7379 1k1e:A (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7380 1k1e:B (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7381 1k1e:C (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7382 1k1e:D (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7383 1k1e:E (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7384 1k1e:F (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7385 1k1e:G (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7386 1k1e:H (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7387 1k1e:I (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7388 1k1e:J (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7389 1k1e:K (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7390 1k1e:L (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    7391 1k1i:A (2.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11676542
    7392 1k1j:A (2.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11676542
    7393 1k1l:A (2.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11676542
    7394 1k1m:A (2.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11676542
    7395 1k1n:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11676542
    7396 1k1o:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11676542
    7397 1k1p:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11676542
    7398 1k1w:A (2.8) BS02 CA 2.4.1.25 GO:0003824 ... O32462 12618437
    7399 1k1x:A (2.4) BS01 CA 2.4.1.25 GO:0003824 ... O32462 12618437
    7400 1k1x:B (2.4) BS01 CA 2.4.1.25 GO:0003824 ... O32462 12618437
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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