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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6801 1jiw:P (1.74) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    6802 1jiw:P (1.74) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    6803 1jiz:A (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    6804 1jiz:A (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    6805 1jiz:A (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    6806 1jiz:A (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    6807 1jiz:A (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    6808 1jiz:B (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    6809 1jiz:B (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    6810 1jiz:B (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    6811 1jiz:B (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    6812 1jiz:B (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    6813 1jj2:2 (2.4) BS02 MG ? GO:0000049 ... P32411 11483524
    6814 1jj2:A (2.4) BS02 MG ? GO:0002181 ... P20276 11483524
    6815 1jj2:S (2.4) BS02 MG ? GO:0002181 ... P10972 11483524
    6816 1jj2:X (2.4) BS02 MG ? GO:0000166 ... P12736 11483524
    6817 1jj9:A (2.0) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    6818 1jj9:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    6819 1jj9:A (2.0) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    6820 1jj9:A (2.0) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    6821 1jjd:A (-1.00) BS01 ZN ? GO:0046872 ... P30331 11493688
    6822 1jjd:A (-1.00) BS02 ZN ? GO:0046872 ... P30331 11493688
    6823 1jjd:A (-1.00) BS03 ZN ? GO:0046872 ... P30331 11493688
    6824 1jjd:A (-1.00) BS04 ZN ? GO:0046872 ... P30331 11493688
    6825 1jje:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6826 1jje:A (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6827 1jje:A (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6828 1jje:B (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6829 1jje:B (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6830 1jje:B (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6831 1jjt:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6832 1jjt:A (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6833 1jjt:A (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6834 1jjt:B (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6835 1jjt:B (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6836 1jjt:B (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    6837 1jjw:A (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    6838 1jjw:B (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    6839 1jjw:C (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    6840 1jk0:A (2.8) BS01 ZN 1.17.4.1 GO:0004748 ... P09938 11526233
    6841 1jk1:A (1.9) BS03 ZN ? N/A P08046 11800559
    6842 1jk1:A (1.9) BS04 ZN ? N/A P08046 11800559
    6843 1jk1:A (1.9) BS05 ZN ? N/A P08046 11800559
    6844 1jk2:A (1.65) BS03 ZN ? N/A P08046 11800559
    6845 1jk2:A (1.65) BS04 ZN ? N/A P08046 11800559
    6846 1jk2:A (1.65) BS05 ZN ? N/A P08046 11800559
    6847 1jk3:A (1.09) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575928
    6848 1jk3:A (1.09) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575928
    6849 1jk3:A (1.09) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575928
    6850 1jk3:A (1.09) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575928
    6851 1jk3:A (1.09) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575928
    6852 1jk7:A (1.9) BS01 MN 3.1.3.16 GO:0000070 ... P36873 11535607
    6853 1jk7:A (1.9) BS02 MN 3.1.3.16 GO:0000070 ... P36873 11535607
    6854 1jk9:A (2.9) BS01 ZN 1.15.1.1 GO:0004784 ... P00445 11524675
    6855 1jk9:C (2.9) BS01 ZN 1.15.1.1 GO:0004784 ... P00445 11524675
    6856 1jke:A (1.55) BS01 ZN 3.1.1.96 GO:0000049 ... P0A6M4 11568181
    6857 1jke:C (1.55) BS01 ZN 3.1.1.96 GO:0000049 ... P0A6M4 11568181
    6858 1jke:D (1.55) BS01 ZN 3.1.1.96 GO:0000049 ... P0A6M4 11568181
    6859 1jkk:A (2.4) BS01 MG 2.7.11.1 GO:0004672 ... P53355 11573098
    6860 1jku:A (1.84) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6861 1jku:A (1.84) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6862 1jku:A (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6863 1jku:A (1.84) BS04 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6864 1jku:B (1.84) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6865 1jku:B (1.84) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6866 1jku:B (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6867 1jku:B (1.84) BS04 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6868 1jku:C (1.84) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6869 1jku:C (1.84) BS02 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6870 1jku:C (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6871 1jku:C (1.84) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6872 1jku:D (1.84) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6873 1jku:D (1.84) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6874 1jku:D (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6875 1jku:D (1.84) BS04 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6876 1jku:E (1.84) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6877 1jku:E (1.84) BS02 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6878 1jku:E (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6879 1jku:E (1.84) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6880 1jku:F (1.84) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6881 1jku:F (1.84) BS02 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6882 1jku:F (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6883 1jku:F (1.84) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6884 1jkv:A (1.39) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6885 1jkv:A (1.39) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6886 1jkv:A (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6887 1jkv:A (1.39) BS05 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6888 1jkv:B (1.39) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6889 1jkv:B (1.39) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6890 1jkv:B (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6891 1jkv:B (1.39) BS05 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6892 1jkv:C (1.39) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6893 1jkv:C (1.39) BS02 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6894 1jkv:C (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6895 1jkv:C (1.39) BS05 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6896 1jkv:D (1.39) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6897 1jkv:D (1.39) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6898 1jkv:D (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6899 1jkv:D (1.39) BS05 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6900 1jkv:E (1.39) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6901 1jkv:E (1.39) BS02 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6902 1jkv:E (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6903 1jkv:E (1.39) BS05 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6904 1jkv:F (1.39) BS01 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6905 1jkv:F (1.39) BS02 CA 1.11.1.6 GO:0004096 ... P60355 11587647
    6906 1jkv:F (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6907 1jkv:F (1.39) BS05 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6908 1jl5:A (2.1) BS01 CA ? GO:0005576 ... P17778 11575934
    6909 1jl5:A (2.1) BS02 CA ? GO:0005576 ... P17778 11575934
    6910 1jl5:A (2.1) BS03 CA ? GO:0005576 ... P17778 11575934
    6911 1jlk:A (2.3) BS01 MN ? GO:0000160 ... Q55169 11847283
    6912 1jlm:A (2.0) BS01 MN ? N/A P11215 8747460
    6913 1jm0:A (1.7) BS01 MN N/A N/A N/A 11749531
    6914 1jm0:B (1.7) BS01 MN N/A N/A N/A 11749531
    6915 1jm0:B (1.7) BS02 MN N/A N/A N/A 11749531
    6916 1jm0:C (1.7) BS01 MN N/A N/A N/A 11749531
    6917 1jm0:C (1.7) BS02 MN N/A N/A N/A 11749531
    6918 1jm0:D (1.7) BS02 MN N/A N/A N/A 11749531
    6919 1jm0:D (1.7) BS03 MN N/A N/A N/A 11749531
    6920 1jm0:D (1.7) BS04 MN N/A N/A N/A 11749531
    6921 1jm0:E (1.7) BS01 MN N/A N/A N/A 11749531
    6922 1jm0:E (1.7) BS02 MN N/A N/A N/A 11749531
    6923 1jm0:F (1.7) BS01 MN N/A N/A N/A 11749531
    6924 1jm0:F (1.7) BS02 MN N/A N/A N/A 11749531
    6925 1jm7:A (-1.00) BS01 ZN 2.3.2.27 GO:0006281 ... P38398 11573085
    6926 1jm7:B (-1.00) BS01 ZN 2.3.2.27 GO:0003697 ... Q99728 11573085
    6927 1jm7:B (-1.00) BS02 ZN 2.3.2.27 GO:0003697 ... Q99728 11573085
    6928 1jmb:A (2.2) BS01 MN N/A N/A N/A 11749531
    6929 1jmb:B (2.2) BS01 MN N/A N/A N/A 11749531
    6930 1jmb:C (2.2) BS02 MN N/A N/A N/A 11749531
    6931 1jmj:A (2.35) BS01 CA ? GO:0004866 ... P05546 12169660
    6932 1jml:A (1.9) BS01 ZN ? N/A Q51912 11526208
    6933 1jml:A (1.9) BS02 ZN ? N/A Q51912 11526208
    6934 1jml:A (1.9) BS03 ZN ? N/A Q51912 11526208
    6935 1jms:A (2.36) BS01 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 11823435
    6936 1jmu:G (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    6937 1jmu:H (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    6938 1jmu:I (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    6939 1jn1:A (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    6940 1jn1:B (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    6941 1jn1:C (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    6942 1jn1:C (2.9) BS02 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    6943 1jn2:P (1.9) BS01 CA ? GO:0030246 ... P02866 11504727
    6944 1jn2:P (1.9) BS02 MN ? GO:0030246 ... P02866 11504727
    6945 1jn7:A (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 12110675
    6946 1jn9:A (2.3) BS01 CA 3.4.19.5 GO:0016787 ... P37595 18323626
    6947 1jnf:A (2.6) BS03 FE ? GO:0005576 ... P19134 11752780
    6948 1jnf:A (2.6) BS04 FE ? GO:0005576 ... P19134 11752780
    6949 1jnq:A (2.1) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 12964012
    6950 1job:A (2.4) BS01 ZN ? GO:0005634 ... Q64288 12054872
    6951 1job:A (2.4) BS02 ZN ? GO:0005634 ... Q64288 12054872
    6952 1joc:A (2.2) BS01 ZN ? GO:0046872 ... Q15075 11741531
    6953 1joc:A (2.2) BS02 ZN ? GO:0046872 ... Q15075 11741531
    6954 1joc:B (2.2) BS01 ZN ? GO:0046872 ... Q15075 11741531
    6955 1joc:B (2.2) BS02 ZN ? GO:0046872 ... Q15075 11741531
    6956 1jod:A (3.2) BS01 ZN ? GO:0005634 ... Q64288 12054872
    6957 1jod:B (3.2) BS01 ZN ? GO:0005634 ... Q64288 12054872
    6958 1jod:B (3.2) BS02 ZN ? GO:0005634 ... Q64288 12054872
    6959 1joe:A (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    6960 1joe:B (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    6961 1joe:C (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    6962 1joe:D (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    6963 1joi:A (2.05) BS01 CU ? GO:0005507 ... P80546 8109977
    6964 1joj:A (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    6965 1joj:A (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    6966 1joj:B (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    6967 1joj:B (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    6968 1joj:C (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    6969 1joj:C (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    6970 1joj:D (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    6971 1joj:D (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    6972 1jom:A (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    6973 1jou:B (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    6974 1jou:D (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    6975 1jou:F (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    6976 1jp4:A (1.69) BS02 MG 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    6977 1jp4:A (1.69) BS03 MG 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    6978 1jpm:A (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    6979 1jpm:B (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    6980 1jpm:C (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    6981 1jpm:D (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    6982 1jpr:A (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    6983 1jpr:A (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    6984 1jpr:B (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    6985 1jpr:B (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    6986 1jpu:A (1.8) BS01 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    6987 1jpu:A (1.8) BS02 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    6988 1jq5:A (1.7) BS01 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    6989 1jq5:A (1.7) BS02 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    6990 1jqa:A (2.05) BS01 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    6991 1jqa:A (2.05) BS02 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    6992 1jqb:A (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    6993 1jqb:B (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    6994 1jqb:C (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    6995 1jqb:D (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    6996 1jqc:A (1.61) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    6997 1jqc:A (1.61) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    6998 1jqc:B (1.61) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    6999 1jqc:B (1.61) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    7000 1jqf:A (1.85) BS02 FE ? GO:0005576 ... P02787 11570867

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417