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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6601 1jai:A (1.8) BS01 MN 3.6.5.2 GO:0003924 ... P01112 9102473
    6602 1jan:A (2.5) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    6603 1jan:A (2.5) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    6604 1jan:A (2.5) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    6605 1jan:A (2.5) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    6606 1jao:A (2.4) BS02 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    6607 1jao:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    6608 1jao:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    6609 1jao:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    6610 1jap:A (1.82) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    6611 1jap:A (1.82) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    6612 1jap:A (1.82) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    6613 1jap:A (1.82) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    6614 1jaq:A (2.4) BS01 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    6615 1jaq:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    6616 1jaq:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    6617 1jaq:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    6618 1jaw:A (2.7) BS01 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    6619 1jaw:A (2.7) BS02 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    6620 1jaz:A (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    6621 1jaz:B (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    6622 1jb0:L (2.5) BS04 CA ? GO:0009522 ... Q8DGB4 11418848
    6623 1jba:A (-1.00) BS01 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    6624 1jba:A (-1.00) BS02 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    6625 1jba:A (-1.00) BS03 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    6626 1jbc:A (1.15) BS01 MN ? GO:0030246 ... P02866 15299577
    6627 1jbc:A (1.15) BS02 CA ? GO:0030246 ... P02866 15299577
    6628 1jbv:A (1.95) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    6629 1jbw:A (1.85) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    6630 1jbz:A (1.5) BS01 MG ? GO:0003674 ... P42212 12501176
    6631 1jc2:A (-1.00) BS01 CA ? GO:0005509 ... P02588 11513585
    6632 1jc2:A (-1.00) BS02 CA ? GO:0005509 ... P02588 11513585
    6633 1jc9:A (2.01) BS01 CA ? GO:0005576 ... Q9U8W8 11707569
    6634 1jcc:A (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    6635 1jcc:B (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    6636 1jcc:C (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    6637 1jcq:B (2.3) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 11687658
    6638 1jcr:B (2.0) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    6639 1jcs:B (2.2) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    6640 1jct:A (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    6641 1jct:B (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    6642 1jcv:A (1.55) BS01 CU 1.15.1.1 GO:0004784 ... P00445 8652572
    6643 1jcv:A (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 8652572
    6644 1jcz:A (1.55) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    6645 1jcz:B (1.55) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    6646 1jd0:A (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    6647 1jd0:B (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    6648 1jd2:G (3.0) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11493007
    6649 1jd2:H (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043 11493007
    6650 1jd2:I (3.0) BS02 MG 3.4.99.46 GO:0000502 ... P25451 11493007
    6651 1jd2:K (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11493007
    6652 1jd2:L (3.0) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11493007
    6653 1jd2:N (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11493007
    6654 1jd4:A (2.7) BS01 ZN 2.3.2.27 N/A Q24306 11511363
    6655 1jd4:B (2.7) BS01 ZN 2.3.2.27 N/A Q24306 11511363
    6656 1jd5:A (1.9) BS02 ZN 2.3.2.27 N/A Q24306 11511363
    6657 1jd6:A (2.7) BS02 ZN 2.3.2.27 N/A Q24306 11511363
    6658 1jd7:A (2.25) BS01 CA 3.2.1.1 GO:0003824 ... P29957 12021442
    6659 1jd9:A (2.5) BS01 CA 3.2.1.1 GO:0003824 ... P29957 12021442
    6660 1jda:A (2.2) BS01 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    6661 1jda:A (2.2) BS02 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    6662 1jdb:B (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6663 1jdb:B (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6664 1jdb:B (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6665 1jdb:B (2.1) BS05 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6666 1jdb:E (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6667 1jdb:E (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6668 1jdb:E (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6669 1jdb:E (2.1) BS05 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6670 1jdb:H (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6671 1jdb:H (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6672 1jdb:H (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6673 1jdb:H (2.1) BS05 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6674 1jdb:K (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6675 1jdb:K (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6676 1jdb:K (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6677 1jdb:K (2.1) BS05 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10089390
    6678 1jdc:A (1.9) BS05 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    6679 1jdc:A (1.9) BS06 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    6680 1jdd:A (1.9) BS05 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    6681 1jdd:A (1.9) BS06 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    6682 1jdf:A (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    6683 1jdf:B (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    6684 1jdf:C (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    6685 1jdf:D (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    6686 1jdi:A (2.4) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    6687 1jdi:B (2.4) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    6688 1jdi:C (2.4) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    6689 1jdi:D (2.4) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    6690 1jdi:E (2.4) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    6691 1jdi:F (2.4) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    6692 1je5:B (1.9) BS01 CA ? GO:0003677 ... P03696 11481454
    6693 1jea:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6694 1jea:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6695 1jec:A (2.5) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    6696 1jed:A (2.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    6697 1jed:B (2.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    6698 1jee:A (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    6699 1jee:B (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    6700 1jer:A (1.6) BS01 CU ? GO:0009055 ... P29602 8931136
    6701 1jf5:A (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    6702 1jf5:B (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    6703 1jf6:A (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    6704 1jf6:B (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    6705 1jfg:B (2.5) BS01 MG 4.2.3.6 GO:0016106 ... P13513 11698643
    6706 1jfg:B (2.5) BS02 MG 4.2.3.6 GO:0016106 ... P13513 11698643
    6707 1jfh:A (2.03) BS06 CA 3.2.1.1 GO:0003824 ... P00690 9385631
    6708 1jfk:A (-1.00) BS01 CA ? GO:0001891 ... P38505 11724551
    6709 1jfk:A (-1.00) BS02 CA ? GO:0001891 ... P38505 11724551
    6710 1jfk:A (-1.00) BS03 CA ? GO:0001891 ... P38505 11724551
    6711 1jfk:A (-1.00) BS04 CA ? GO:0001891 ... P38505 11724551
    6712 1jfz:A (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    6713 1jfz:B (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    6714 1jfz:C (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    6715 1jfz:D (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    6716 1jg8:A (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    6717 1jg8:B (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    6718 1jg8:B (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    6719 1jg8:C (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    6720 1jg8:D (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    6721 1jg8:D (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    6722 1jgm:A (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    6723 1jgm:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    6724 1jgm:B (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    6725 1jgm:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    6726 1jgt:A (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    6727 1jgt:B (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    6728 1jgw:L (2.8) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    6729 1jgw:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    6730 1jgx:L (3.01) BS05 FE ? GO:0009772 ... P0C0Y8 11526320
    6731 1jgx:M (3.01) BS04 FE ? GO:0009772 ... P0C0Y9 11526320
    6732 1jgy:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    6733 1jgy:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    6734 1jgz:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    6735 1jgz:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    6736 1jh0:L (3.5) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    6737 1jh0:M (3.5) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    6738 1jh1:A (2.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    6739 1jh1:A (2.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    6740 1jh1:A (2.7) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    6741 1jh1:A (2.7) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    6742 1jhn:A (2.9) BS01 CA ? GO:0005509 ... P24643 11583625
    6743 1ji1:A (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    6744 1ji1:A (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    6745 1ji1:A (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    6746 1ji1:B (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    6747 1ji1:B (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    6748 1ji1:B (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    6749 1ji2:A (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    6750 1ji2:B (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    6751 1ji3:A (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    6752 1ji3:A (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    6753 1ji3:B (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    6754 1ji3:B (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    6755 1ji4:A (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6756 1ji4:A (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6757 1ji4:B (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6758 1ji4:B (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6759 1ji4:C (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6760 1ji4:C (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6761 1ji4:D (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6762 1ji4:D (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6763 1ji4:E (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6764 1ji4:E (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6765 1ji4:F (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6766 1ji4:F (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6767 1ji4:G (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6768 1ji4:G (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6769 1ji4:H (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6770 1ji4:H (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6771 1ji4:I (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6772 1ji4:I (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6773 1ji4:J (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6774 1ji4:J (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6775 1ji4:K (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6776 1ji4:K (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6777 1ji4:L (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6778 1ji4:L (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    6779 1ji5:A (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    6780 1ji5:B (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    6781 1ji5:C (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    6782 1ji5:D (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    6783 1jia:A (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    6784 1jia:B (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    6785 1jig:A (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6786 1jig:A (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6787 1jig:B (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6788 1jig:B (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6789 1jig:C (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6790 1jig:C (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6791 1jig:D (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6792 1jig:D (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    6793 1jir:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    6794 1jiw:P (1.74) BS01 ZN 3.4.24.40 GO:0001869 ... Q03023 11445573
    6795 1jiw:P (1.74) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    6796 1jiw:P (1.74) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    6797 1jiw:P (1.74) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    6798 1jiw:P (1.74) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    6799 1jiw:P (1.74) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    6800 1jiw:P (1.74) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 11445573

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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