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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 1j10:A (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6402 1j10:B (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6403 1j10:C (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6404 1j10:D (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6405 1j11:A (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6406 1j11:B (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6407 1j11:C (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6408 1j11:D (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6409 1j12:A (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6410 1j12:B (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6411 1j12:C (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6412 1j12:D (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    6413 1j14:A (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    6414 1j15:A (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    6415 1j16:A (1.6) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    6416 1j17:T (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    6417 1j18:A (2.0) BS09 CA 3.2.1.2 GO:0000272 ... P36924 12741813
    6418 1j1a:A (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    6419 1j1a:A (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    6420 1j1a:B (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    6421 1j1a:B (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    6422 1j1c:A (2.1) BS01 MG 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    6423 1j1c:B (2.1) BS01 MG 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    6424 1j1d:A (2.61) BS01 CA ? GO:0002086 ... P63316 12840750
    6425 1j1d:A (2.61) BS02 CA ? GO:0002086 ... P63316 12840750
    6426 1j1d:A (2.61) BS03 CA ? GO:0002086 ... P63316 12840750
    6427 1j1d:D (2.61) BS01 CA ? GO:0002086 ... P63316 12840750
    6428 1j1d:D (2.61) BS02 CA ? GO:0002086 ... P63316 12840750
    6429 1j1d:D (2.61) BS03 CA ? GO:0002086 ... P63316 12840750
    6430 1j1e:A (3.3) BS01 CA ? GO:0002086 ... P63316 12840750
    6431 1j1e:A (3.3) BS02 CA ? GO:0002086 ... P63316 12840750
    6432 1j1e:A (3.3) BS03 CA ? GO:0002086 ... P63316 12840750
    6433 1j1e:D (3.3) BS01 CA ? GO:0002086 ... P63316 12840750
    6434 1j1e:D (3.3) BS02 CA ? GO:0002086 ... P63316 12840750
    6435 1j1e:D (3.3) BS03 CA ? GO:0002086 ... P63316 12840750
    6436 1j1l:A (2.1) BS01 FE2 1.13.11.24 GO:0003712 ... O00625 14573596
    6437 1j1n:A (1.6) BS05 CA ? GO:0042597 ... Q9KWT5 12486124
    6438 1j1n:B (1.6) BS05 CA ? GO:0042597 ... Q9KWT5 12486124
    6439 1j1t:A (2.0) BS01 CA 4.2.2.3 GO:0046872 ... P84143 N/A
    6440 1j24:A (1.78) BS01 CA ? GO:0003677 ... Q8TZH8 12679022
    6441 1j25:A (1.78) BS01 MN ? GO:0003677 ... Q8TZH8 12679022
    6442 1j2b:A (3.3) BS03 MG 2.4.2.48 GO:0002099 ... O58843 12732145
    6443 1j2b:B (3.3) BS03 ZN 2.4.2.48 GO:0002099 ... O58843 12732145
    6444 1j2b:B (3.3) BS04 MG 2.4.2.48 GO:0002099 ... O58843 12732145
    6445 1j2j:A (1.6) BS01 MG 3.6.5.2 GO:0000139 ... P84078 12679809
    6446 1j2o:A (-1.00) BS01 ZN ? N/A P25801
    P70662
    12727888
    6447 1j2o:A (-1.00) BS02 ZN ? N/A P25801
    P70662
    12727888
    6448 1j2t:A (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6449 1j2t:A (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    6450 1j2t:B (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6451 1j2t:B (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    6452 1j2t:C (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6453 1j2t:C (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    6454 1j2t:D (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6455 1j2t:D (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    6456 1j2t:E (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6457 1j2t:E (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    6458 1j2t:F (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6459 1j2t:F (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    6460 1j2u:A (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6461 1j2u:A (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6462 1j2u:B (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6463 1j2u:B (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6464 1j2u:C (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6465 1j2u:C (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6466 1j2u:D (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6467 1j2u:D (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6468 1j2u:E (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6469 1j2u:E (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6470 1j2u:F (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6471 1j2u:F (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    6472 1j2x:A (2.0) BS02 ZN ? GO:0003677 ... P35269 12591941
    6473 1j30:A (1.7) BS01 FE ? GO:0016491 ... F9VPE5 14529281
    6474 1j30:A (1.7) BS02 ZN ? GO:0016491 ... F9VPE5 14529281
    6475 1j30:B (1.7) BS02 ZN ? GO:0016491 ... F9VPE5 14529281
    6476 1j30:B (1.7) BS03 FE ? GO:0016491 ... F9VPE5 14529281
    6477 1j34:A (1.55) BS01 CA ? GO:0005509 ... Q7LZ71 12695512
    6478 1j34:B (1.55) BS01 CA ? GO:0005509 ... P23807 12695512
    6479 1j34:C (1.55) BS01 MG 3.4.21.22 GO:0005509 ... P00741 12695512
    6480 1j34:C (1.55) BS02 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6481 1j34:C (1.55) BS03 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6482 1j34:C (1.55) BS04 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6483 1j34:C (1.55) BS05 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6484 1j34:C (1.55) BS06 MG 3.4.21.22 GO:0005509 ... P00741 12695512
    6485 1j34:C (1.55) BS07 MG 3.4.21.22 GO:0005509 ... P00741 12695512
    6486 1j35:A (1.8) BS01 CA ? GO:0005509 ... Q7LZ71 12695512
    6487 1j35:B (1.8) BS01 CA ? GO:0005509 ... P23807 12695512
    6488 1j35:C (1.8) BS01 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6489 1j35:C (1.8) BS02 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6490 1j35:C (1.8) BS03 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6491 1j35:C (1.8) BS04 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6492 1j35:C (1.8) BS05 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6493 1j35:C (1.8) BS06 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6494 1j35:C (1.8) BS07 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    6495 1j36:A (2.4) BS01 ZN 3.4.15.1 GO:0006508 ... Q10714 12633854
    6496 1j36:B (2.4) BS01 ZN 3.4.15.1 GO:0006508 ... Q10714 12633854
    6497 1j37:A (2.4) BS01 ZN 3.4.15.1 GO:0006508 ... Q10714 12633854
    6498 1j37:B (2.4) BS01 ZN 3.4.15.1 GO:0006508 ... Q10714 12633854
    6499 1j38:A (2.6) BS01 ZN 3.4.15.1 GO:0006508 ... Q10714 12633854
    6500 1j38:B (2.6) BS01 ZN 3.4.15.1 GO:0006508 ... Q10714 12633854
    6501 1j3b:A (2.0) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    6502 1j3b:B (2.0) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    6503 1j3g:A (-1.00) BS01 ZN 3.5.1.28 GO:0005737 ... P82974 12654266
    6504 1j3p:A (2.02) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    6505 1j3q:A (1.85) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    6506 1j3q:B (1.85) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    6507 1j3r:A (2.18) BS02 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    6508 1j53:A (1.8) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    6509 1j54:A (1.7) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    6510 1j55:A (2.0) BS01 CA ? GO:0000287 ... P25815 12507480
    6511 1j55:A (2.0) BS02 CA ? GO:0000287 ... P25815 12507480
    6512 1j58:A (1.75) BS01 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    6513 1j58:A (1.75) BS02 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    6514 1j5c:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    6515 1j5d:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    6516 1j5e:N (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 11014182
    6517 1j5u:A (2.0) BS01 CA ? GO:0008033 ... Q9X0H1 N/A
    6518 1j6v:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... Q9RRU8 11435117
    6519 1j6w:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    6520 1j6w:B (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    6521 1j6x:A (2.38) BS01 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    6522 1j6x:B (2.38) BS02 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    6523 1j6z:A (1.54) BS01 CA 3.6.4.- GO:0000287 ... P68135 11474115
    6524 1j6z:A (1.54) BS02 CA 3.6.4.- GO:0000287 ... P68135 11474115
    6525 1j6z:A (1.54) BS03 CA 3.6.4.- GO:0000287 ... P68135 11474115
    6526 1j79:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    6527 1j79:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    6528 1j79:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    6529 1j79:B (1.7) BS03 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    6530 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    6531 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    6532 1j7l:A (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    6533 1j7l:B (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    6534 1j7n:A (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    6535 1j7n:B (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    6536 1j7o:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    6537 1j7o:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    6538 1j7p:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    6539 1j7p:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    6540 1j7u:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    6541 1j7u:B (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    6542 1j83:A (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    6543 1j83:B (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    6544 1j84:A (2.02) BS05 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    6545 1j8a:A (1.21) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    6546 1j8e:A (1.85) BS01 CA ? N/A Q07954 11735395
    6547 1j8f:A (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    6548 1j8f:B (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    6549 1j8f:C (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    6550 1j8t:A (1.7) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    6551 1j8u:A (1.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    6552 1j97:A (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    6553 1j97:B (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    6554 1j98:A (1.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    6555 1j9c:H (2.9) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    6556 1j9j:A (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    6557 1j9j:B (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    6558 1j9k:A (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    6559 1j9k:B (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    6560 1j9l:A (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    6561 1j9l:A (1.9) BS02 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    6562 1j9l:B (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    6563 1j9q:A (1.65) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6564 1j9q:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6565 1j9q:B (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6566 1j9q:B (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6567 1j9q:C (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6568 1j9q:C (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6569 1j9r:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6570 1j9r:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6571 1j9r:A (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6572 1j9r:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6573 1j9r:B (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6574 1j9r:B (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6575 1j9r:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6576 1j9r:C (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6577 1j9r:C (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6578 1j9s:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6579 1j9s:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6580 1j9s:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6581 1j9s:B (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6582 1j9s:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6583 1j9s:C (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6584 1j9t:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6585 1j9t:A (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6586 1j9t:A (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6587 1j9t:B (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6588 1j9t:B (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6589 1j9t:B (1.95) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6590 1j9t:C (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6591 1j9t:C (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6592 1j9t:C (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    6593 1j9w:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    6594 1j9w:B (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    6595 1j9y:A (1.85) BS01 ZN 3.2.1.78 GO:0000272 ... P49424 11382747
    6596 1j9y:A (1.85) BS02 ZN 3.2.1.78 GO:0000272 ... P49424 11382747
    6597 1ja8:A (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    6598 1ja8:B (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    6599 1jae:A (1.65) BS01 CA 3.2.1.1 GO:0003824 ... P56634 9600843
    6600 1jah:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9102473

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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