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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 1i7o:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 N/A
    5802 1i7q:A (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    5803 1i7q:C (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    5804 1i7w:A (2.0) BS01 ZN ? GO:0007155 ... Q02248 11348595
    5805 1i7w:C (2.0) BS01 ZN ? GO:0007155 ... Q02248 11348595
    5806 1i82:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5807 1i82:A (1.9) BS04 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5808 1i82:A (1.9) BS05 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5809 1i83:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331290
    5810 1i83:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331290
    5811 1i8a:A (1.9) BS02 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5812 1i8a:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5813 1i8a:A (1.9) BS04 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5814 1i8j:A (1.9) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    5815 1i8j:B (1.9) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    5816 1i8u:A (1.9) BS01 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5817 1i8u:A (1.9) BS02 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5818 1i8u:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    5819 1i8z:A (1.93) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11831900
    5820 1i90:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11831900
    5821 1i91:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11831900
    5822 1i94:D (3.2) BS02 MG ? GO:0003723 ... P80373 11296217
    5823 1i94:D (3.2) BS03 MG ? GO:0003723 ... P80373 11296217
    5824 1i94:E (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 11296217
    5825 1i94:L (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 11296217
    5826 1i94:L (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 11296217
    5827 1i94:L (3.2) BS04 MG ? GO:0000049 ... Q5SHN3 11296217
    5828 1i94:N (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 11296217
    5829 1i94:P (3.2) BS02 MG ? GO:0003735 ... Q5SJH3 11296217
    5830 1i94:Q (3.2) BS02 MG ? GO:0003735 ... P0DOY7 11296217
    5831 1i94:Q (3.2) BS03 MG ? GO:0003735 ... P0DOY7 11296217
    5832 1i94:T (3.2) BS02 MG ? GO:0003723 ... P80380 11296217
    5833 1i94:T (3.2) BS03 MG ? GO:0003723 ... P80380 11296217
    5834 1i94:T (3.2) BS04 MG ? GO:0003723 ... P80380 11296217
    5835 1i9a:A (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    5836 1i9a:B (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    5837 1i9b:A (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    5838 1i9b:A (2.7) BS02 CA ? GO:0004888 ... P58154 11357122
    5839 1i9b:B (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    5840 1i9b:C (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    5841 1i9b:D (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    5842 1i9b:E (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    5843 1i9b:E (2.7) BS02 CA ? GO:0004888 ... P58154 11357122
    5844 1i9l:A (1.93) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11572683
    5845 1i9m:A (1.84) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11572683
    5846 1i9n:A (1.86) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11572683
    5847 1i9o:A (1.86) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11572683
    5848 1i9p:A (1.92) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11572683
    5849 1i9q:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11572683
    5850 1i9r:K (3.1) BS01 ZN N/A N/A N/A 11525169
    5851 1i9r:X (3.1) BS01 ZN N/A N/A N/A 11525169
    5852 1i9z:A (1.8) BS01 CA 3.1.3.36 GO:0016791 ... O43001 11348594
    5853 1ia6:A (1.8) BS01 CA 3.2.1.-
    3.2.1.4
    GO:0004553 ... Q9EYQ2 12220178
    5854 1ia6:A (1.8) BS02 ZN 3.2.1.-
    3.2.1.4
    GO:0004553 ... Q9EYQ2 12220178
    5855 1ia7:A (2.0) BS03 CA 3.2.1.-
    3.2.1.4
    GO:0004553 ... Q9EYQ2 12220178
    5856 1ia7:A (2.0) BS04 ZN 3.2.1.-
    3.2.1.4
    GO:0004553 ... Q9EYQ2 12220178
    5857 1ia9:A (2.0) BS01 ZN 2.7.11.1 GO:0004674 ... Q923J1 11389851
    5858 1ia9:B (2.0) BS01 ZN 2.7.11.1 GO:0004674 ... Q923J1 11389851
    5859 1iaa:A (1.9) BS01 CU 3.4.24.21 GO:0004222 ... P07584 8006015
    5860 1iab:A (1.79) BS01 CO 3.4.24.21 GO:0004222 ... P07584 8006015
    5861 1iac:A (2.1) BS01 HG 3.4.24.21 GO:0004222 ... P07584 8445658
    5862 1iae:A (1.83) BS01 NI 3.4.24.21 GO:0004222 ... P07584 8006015
    5863 1iag:A (2.0) BS01 ZN 3.4.24.46 GO:0004222 ... P34179 8223430
    5864 1iag:A (2.0) BS02 CA 3.4.24.46 GO:0004222 ... P34179 8223430
    5865 1iah:A (2.4) BS01 ZN 2.7.11.1 GO:0004674 ... Q923J1 11389851
    5866 1iah:B (2.4) BS01 ZN 2.7.11.1 GO:0004674 ... Q923J1 11389851
    5867 1iaj:A (2.8) BS01 ZN 2.7.11.1 GO:0004674 ... Q923J1 11389851
    5868 1iaj:B (2.8) BS01 ZN 2.7.11.1 GO:0004674 ... Q923J1 11389851
    5869 1iau:A (2.0) BS02 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    5870 1iau:A (2.0) BS03 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    5871 1iau:A (2.0) BS04 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    5872 1iau:A (2.0) BS05 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    5873 1iav:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5874 1iav:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5875 1ib5:A (2.45) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    5876 1ib5:A (2.45) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    5877 1ibb:A (2.1) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    5878 1ibb:A (2.1) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    5879 1ibd:A (2.0) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    5880 1ibd:A (2.0) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    5881 1ibf:A (2.2) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    5882 1ibf:A (2.2) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    5883 1ibh:A (2.0) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    5884 1ibh:A (2.0) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    5885 1ibi:A (-1.00) BS01 ZN ? N/A Q05158 11583159
    5886 1ibi:A (-1.00) BS02 ZN ? N/A Q05158 11583159
    5887 1ibk:D (3.31) BS02 MG ? GO:0003723 ... P80373 11340196
    5888 1ibk:D (3.31) BS03 ZN ? GO:0003723 ... P80373 11340196
    5889 1ibk:N (3.31) BS02 ZN ? GO:0003735 ... P0DOY6 11340196
    5890 1ibl:D (3.11) BS02 MG ? GO:0003723 ... P80373 11340196
    5891 1ibl:D (3.11) BS03 ZN ? GO:0003723 ... P80373 11340196
    5892 1ibl:J (3.11) BS02 MG ? GO:0000049 ... Q5SHN7 11340196
    5893 1ibl:L (3.11) BS02 MG ? GO:0000049 ... Q5SHN3 11340196
    5894 1ibl:N (3.11) BS02 ZN ? GO:0003735 ... P0DOY6 11340196
    5895 1ibm:D (3.31) BS02 MG ? GO:0003723 ... P80373 11340196
    5896 1ibm:L (3.31) BS02 MG ? GO:0000049 ... Q5SHN3 11340196
    5897 1ibm:N (3.31) BS02 ZN ? GO:0003735 ... P0DOY6 11340196
    5898 1ibq:A (2.14) BS01 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    5899 1ibq:A (2.14) BS02 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    5900 1ibq:A (2.14) BS03 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    5901 1ibq:B (2.14) BS02 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    5902 1ibq:B (2.14) BS03 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    5903 1ibq:B (2.14) BS04 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    5904 1ibr:A (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 10367892
    5905 1ibr:C (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 10367892
    5906 1iby:A (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5907 1iby:B (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5908 1iby:C (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5909 1iby:D (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5910 1ibz:A (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5911 1ibz:B (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5912 1ibz:C (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5913 1ibz:D (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5914 1ic0:A (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5915 1ic0:B (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5916 1ic0:C (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5917 1ic0:D (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5918 1ic0:E (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5919 1ic0:F (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    5920 1ic6:A (0.98) BS01 CA 3.4.21.64 GO:0004252 ... P06873 11258922
    5921 1ic6:A (0.98) BS02 CA 3.4.21.64 GO:0004252 ... P06873 11258922
    5922 1ici:A (2.1) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 11336676
    5923 1ici:B (2.1) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 11336676
    5924 1id0:A (1.6) BS01 MG 2.7.13.3
    3.1.3.-
    GO:0016310 ... P23837 11493605
    5925 1id2:A (2.15) BS01 CU ? GO:0005507 ... P22365 8120896
    5926 1id2:B (2.15) BS01 CU ? GO:0005507 ... P22365 8120896
    5927 1id2:C (2.15) BS01 CU ? GO:0005507 ... P22365 8120896
    5928 1id3:C (3.1) BS03 MN ? GO:0000122 ... P04911 11566884
    5929 1id3:D (3.1) BS02 MN ? GO:0000786 ... P02294 11566884
    5930 1id3:E (3.1) BS03 MN ? GO:0000500 ... P61830 11566884
    5931 1id3:G (3.1) BS03 MN ? GO:0000122 ... P04911 11566884
    5932 1id3:G (3.1) BS04 MN ? GO:0000122 ... P04911 11566884
    5933 1id5:H (2.5) BS01 CA 3.4.21.5 GO:0004252 ... P00735 11513582
    5934 1idc:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 7761851
    5935 1ido:A (1.7) BS01 MG ? N/A P11215 7867070
    5936 1ids:A (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    5937 1ids:B (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    5938 1ids:C (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    5939 1ids:D (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    5940 1ie0:A (1.6) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11553770
    5941 1ie7:C (1.85) BS01 NI 3.5.1.5 GO:0005737 ... P41020 11713685
    5942 1ie7:C (1.85) BS02 NI 3.5.1.5 GO:0005737 ... P41020 11713685
    5943 1iee:A (0.94) BS01 NA 3.2.1.17 GO:0003796 ... P00698 11468395
    5944 1iej:A (1.65) BS01 FE ? GO:0005576 ... P02789 11399070
    5945 1if4:A (1.93) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5946 1if5:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5947 1if6:A (2.09) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5948 1if7:A (1.98) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11818565
    5949 1if8:A (1.94) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11818565
    5950 1if9:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11818565
    5951 1ig1:A (1.8) BS01 MN 2.7.11.1 GO:0004672 ... P53355 11573098
    5952 1ig5:A (1.5) BS01 MG ? GO:0005499 ... P02633 9194174
    5953 1ig9:A (2.6) BS03 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 11389835
    5954 1ig9:A (2.6) BS04 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 11389835
    5955 1ig9:A (2.6) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 11389835
    5956 1igb:A (2.3) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 8647077
    5957 1igb:A (2.3) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 8647077
    5958 1igv:A (1.85) BS01 MN ? GO:0005499 ... P02633 9194174
    5959 1ih0:A (-1.00) BS01 CA ? GO:0005509 ... P63316 11320096
    5960 1ih0:A (-1.00) BS02 CA ? GO:0005509 ... P63316 11320096
    5961 1ihu:A (2.15) BS01 MG 7.3.2.7 GO:0005524 ... P08690 11395509
    5962 1ii0:A (2.4) BS01 MG 7.3.2.7 GO:0005524 ... P08690 11395509
    5963 1ii0:B (2.4) BS01 MG 7.3.2.7 GO:0005524 ... P08690 11395509
    5964 1ii7:A (2.2) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    5965 1ii7:A (2.2) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    5966 1ii7:B (2.2) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    5967 1ii7:B (2.2) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    5968 1ii9:A (2.6) BS01 MG 7.3.2.7 GO:0005524 ... P08690 11395509
    5969 1ii9:B (2.6) BS01 MG 7.3.2.7 GO:0005524 ... P08690 11395509
    5970 1ij0:A (1.86) BS01 ZN ? GO:0003700 ... P03069 11371197
    5971 1ij0:B (1.86) BS01 ZN ? GO:0003700 ... P03069 11371197
    5972 1ij0:C (1.86) BS01 ZN ? GO:0003700 ... P03069 11371197
    5973 1ij1:A (1.86) BS01 ZN ? GO:0003700 ... P03069 11371197
    5974 1ij1:B (1.86) BS01 ZN ? GO:0003700 ... P03069 11371197
    5975 1ij1:C (1.86) BS01 ZN ? GO:0003700 ... P03069 11371197
    5976 1ij6:A (3.1) BS01 CA ? GO:0005509 ... P14725 12517342
    5977 1ij6:A (3.1) BS02 CA ? GO:0005509 ... P14725 12517342
    5978 1ij6:A (3.1) BS03 CA ? GO:0005509 ... P14725 12517342
    5979 1ij6:A (3.1) BS04 CA ? GO:0005509 ... P14725 12517342
    5980 1ijl:A (2.6) BS01 CA 3.1.1.4 GO:0004623 ... Q7SID6 11752784
    5981 1ijl:B (2.6) BS01 CA 3.1.1.4 GO:0004623 ... Q7SID6 11752784
    5982 1ik3:A (2.0) BS01 FE 1.13.11.58 GO:0005737 ... P09186 11686682
    5983 1ika:A (2.7) BS01 CA 1.1.1.42 GO:0000287 ... P08200 8369301
    5984 1ile:A (2.5) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 9554847
    5985 1ile:A (2.5) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 9554847
    5986 1ils:A (2.2) BS01 CU ? GO:0005507 ... P00282 8568881
    5987 1ils:B (2.2) BS01 CU ? GO:0005507 ... P00282 8568881
    5988 1ils:C (2.2) BS01 CU ? GO:0005507 ... P00282 8568881
    5989 1ils:D (2.2) BS01 CU ? GO:0005507 ... P00282 8568881
    5990 1ilu:A (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5991 1ilu:B (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5992 1ilu:C (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5993 1ilu:D (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5994 1ilu:E (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5995 1ilu:F (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5996 1ilu:G (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5997 1ilu:H (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5998 1ilu:I (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    5999 1ilu:K (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    6000 1ilu:L (2.3) BS01 CU ? GO:0005507 ... P00282 8568881

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218