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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5601 1hv5:C (2.6) BS03 CA 3.4.24.- GO:0004222 ... Q02853 11254383
    5602 1hv5:D (2.6) BS01 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5603 1hv5:D (2.6) BS02 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5604 1hv5:D (2.6) BS03 CA 3.4.24.- GO:0004222 ... Q02853 11254383
    5605 1hv5:E (2.6) BS01 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5606 1hv5:E (2.6) BS02 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5607 1hv5:E (2.6) BS03 CA 3.4.24.- GO:0004222 ... Q02853 11254383
    5608 1hv5:F (2.6) BS01 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5609 1hv5:F (2.6) BS02 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5610 1hv5:F (2.6) BS03 CA 3.4.24.- GO:0004222 ... Q02853 11254383
    5611 1hv9:B (2.1) BS01 CO 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 11329257
    5612 1hvd:A (2.0) BS01 CA ? GO:0001786 ... P08758 8151707
    5613 1hvd:A (2.0) BS02 CA ? GO:0001786 ... P08758 8151707
    5614 1hvd:A (2.0) BS03 CA ? GO:0001786 ... P08758 8151707
    5615 1hvd:A (2.0) BS04 CA ? GO:0001786 ... P08758 8151707
    5616 1hve:A (2.3) BS01 CA ? GO:0001786 ... P08758 8151707
    5617 1hve:A (2.3) BS02 CA ? GO:0001786 ... P08758 8151707
    5618 1hve:A (2.3) BS03 CA ? GO:0001786 ... P08758 8151707
    5619 1hve:A (2.3) BS04 CA ? GO:0001786 ... P08758 8151707
    5620 1hve:A (2.3) BS05 CA ? GO:0001786 ... P08758 8151707
    5621 1hvf:A (2.0) BS01 CA ? GO:0001786 ... P08758 8151707
    5622 1hvf:A (2.0) BS02 CA ? GO:0001786 ... P08758 8151707
    5623 1hvf:A (2.0) BS03 CA ? GO:0001786 ... P08758 8151707
    5624 1hvf:A (2.0) BS04 CA ? GO:0001786 ... P08758 8151707
    5625 1hvf:A (2.0) BS05 CA ? GO:0001786 ... P08758 8151707
    5626 1hvx:A (2.0) BS01 CA 3.2.1.1 GO:0004553 ... P06279 11226887
    5627 1hvx:A (2.0) BS02 CA 3.2.1.1 GO:0004553 ... P06279 11226887
    5628 1hvx:A (2.0) BS03 CA 3.2.1.1 GO:0004553 ... P06279 11226887
    5629 1hwt:C (2.5) BS05 ZN ? GO:0000981 ... P0CS82 9886294
    5630 1hwt:C (2.5) BS06 ZN ? GO:0000981 ... P0CS82 9886294
    5631 1hwt:D (2.5) BS03 ZN ? GO:0000981 ... P0CS82 9886294
    5632 1hwt:D (2.5) BS04 ZN ? GO:0000981 ... P0CS82 9886294
    5633 1hwt:D (2.5) BS05 ZN ? GO:0000981 ... P0CS82 9886294
    5634 1hwt:G (2.5) BS04 ZN ? GO:0000981 ... P0CS82 9886294
    5635 1hwt:G (2.5) BS05 ZN ? GO:0000981 ... P0CS82 9886294
    5636 1hwt:H (2.5) BS04 ZN ? GO:0000981 ... P0CS82 9886294
    5637 1hwt:H (2.5) BS05 ZN ? GO:0000981 ... P0CS82 9886294
    5638 1hwt:H (2.5) BS06 ZN ? GO:0000981 ... P0CS82 9886294
    5639 1hww:A (1.87) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 11406577
    5640 1hx0:A (1.38) BS07 CA 3.2.1.1 GO:0003824 ... P00690 11412124
    5641 1hx3:A (2.1) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11285217
    5642 1hx3:B (2.1) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11285217
    5643 1hx9:A (3.5) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    5644 1hx9:A (3.5) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    5645 1hxa:A (2.32) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    5646 1hxa:A (2.32) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    5647 1hxg:A (2.9) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    5648 1hxk:A (1.5) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 11406577
    5649 1hxp:A (1.8) BS01 ZN 2.7.7.12 GO:0004335 ... P09148 7669762
    5650 1hxp:A (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 7669762
    5651 1hxp:B (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 7669762
    5652 1hxp:B (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 7669762
    5653 1hxq:A (1.86) BS01 ZN 2.7.7.12 GO:0004335 ... P09148 8794735
    5654 1hxq:A (1.86) BS02 FE 2.7.7.12 GO:0004335 ... P09148 8794735
    5655 1hxq:B (1.86) BS01 ZN 2.7.7.12 GO:0004335 ... P09148 8794735
    5656 1hxq:B (1.86) BS02 FE 2.7.7.12 GO:0004335 ... P09148 8794735
    5657 1hxr:A (1.65) BS01 ZN ? GO:0005085 ... Q08326 11258916
    5658 1hxr:B (1.65) BS01 ZN ? GO:0005085 ... Q08326 11258916
    5659 1hxy:D (2.6) BS02 ZN ? GO:0005576 ... P0A0M0 11432818
    5660 1hy7:A (1.5) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11297453
    5661 1hy7:A (1.5) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11297453
    5662 1hy7:A (1.5) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11297453
    5663 1hy7:A (1.5) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11297453
    5664 1hy7:A (1.5) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11297453
    5665 1hy7:B (1.5) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11297453
    5666 1hy7:B (1.5) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11297453
    5667 1hy7:B (1.5) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11297453
    5668 1hy7:B (1.5) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11297453
    5669 1hy7:B (1.5) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11297453
    5670 1hyi:A (-1.00) BS01 ZN ? GO:0046872 ... Q15075 11230696
    5671 1hyj:A (-1.00) BS01 ZN ? GO:0046872 ... Q15075 11230696
    5672 1hyo:A (1.3) BS01 MG 3.7.1.2 GO:0003824 ... P35505 11154690
    5673 1hyo:A (1.3) BS02 CA 3.7.1.2 GO:0003824 ... P35505 11154690
    5674 1hyo:B (1.3) BS01 MG 3.7.1.2 GO:0003824 ... P35505 11154690
    5675 1hyo:B (1.3) BS02 CA 3.7.1.2 GO:0003824 ... P35505 11154690
    5676 1hyt:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 8034637
    5677 1hyt:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 8034637
    5678 1hyt:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8034637
    5679 1hyt:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8034637
    5680 1hyt:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 8034637
    5681 1hz5:A (1.8) BS01 ZN ? N/A Q51912 11264576
    5682 1hz5:A (1.8) BS02 ZN ? N/A Q51912 11264576
    5683 1hz5:B (1.8) BS01 ZN ? N/A Q51912 11264576
    5684 1hz8:A (-1.00) BS01 CA ? GO:0005509 ... P01130 11478865
    5685 1hz8:A (-1.00) BS02 CA ? GO:0005509 ... P01130 11478865
    5686 1hzx:A (2.8) BS01 ZN ? GO:0000139 ... P02699 11425302
    5687 1hzx:A (2.8) BS02 ZN ? GO:0000139 ... P02699 11425302
    5688 1hzx:A (2.8) BS03 ZN ? GO:0000139 ... P02699 11425302
    5689 1hzx:B (2.8) BS01 ZN ? GO:0000139 ... P02699 11425302
    5690 1hzx:B (2.8) BS02 ZN ? GO:0000139 ... P02699 11425302
    5691 1hzy:A (1.3) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5692 1hzy:A (1.3) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5693 1hzy:B (1.3) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5694 1hzy:B (1.3) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5695 1i08:A (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    5696 1i08:B (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    5697 1i08:C (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    5698 1i08:D (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    5699 1i0b:A (1.3) BS01 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5700 1i0b:A (1.3) BS02 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5701 1i0b:B (1.3) BS01 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5702 1i0b:B (1.3) BS02 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5703 1i0d:A (1.3) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5704 1i0d:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    5705 1i0d:B (1.3) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 11258882
    5706 1i0d:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    5707 1i0h:A (1.35) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    5708 1i0h:B (1.35) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    5709 1i0u:A (-1.00) BS01 CA ? GO:0005509 ... P01130 11478865
    5710 1i0u:A (-1.00) BS02 CA ? GO:0005509 ... P01130 11478865
    5711 1i0x:D (1.65) BS01 CA 4.6.1.24 GO:0001411 ... P00651 11453993
    5712 1i0x:D (1.65) BS02 CA 4.6.1.24 GO:0001411 ... P00651 11453993
    5713 1i19:B (1.7) BS01 MN 1.1.3.6 GO:0000166 ... Q7SID9 11397813
    5714 1i1e:A (2.5) BS02 ZN 3.4.24.69 GO:0004222 ... P10844 11679763
    5715 1i1i:P (2.3) BS01 ZN 3.4.24.16 GO:0004222 ... P42676 11248043
    5716 1i1i:P (2.3) BS02 ZN 3.4.24.16 GO:0004222 ... P42676 11248043
    5717 1i22:A (1.8) BS01 CA 3.2.1.17 GO:0003796 ... P61626 9852096
    5718 1i22:B (1.8) BS01 CA 3.2.1.17 GO:0003796 ... P61626 9852096
    5719 1i22:C (1.8) BS01 CA 3.2.1.17 GO:0003796 ... P61626 9852096
    5720 1i22:D (1.8) BS01 CA 3.2.1.17 GO:0003796 ... P61626 9852096
    5721 1i3h:A (1.2) BS02 MN ? GO:0030246 ... P02866 11453694
    5722 1i3h:A (1.2) BS03 CA ? GO:0030246 ... P02866 11453694
    5723 1i3j:A (2.2) BS03 ZN 3.1.-.- GO:0003677 ... P13299 11447104
    5724 1i3o:E (2.7) BS01 ZN 2.3.2.27 N/A P98170 11257232
    5725 1i3o:F (2.7) BS01 ZN 2.3.2.27 N/A P98170 11257232
    5726 1i3q:A (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 11313498
    5727 1i3q:A (3.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11313498
    5728 1i3q:A (3.1) BS03 MG 2.7.7.6 GO:0000428 ... P04050 11313498
    5729 1i3q:B (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 11313498
    5730 1i3q:C (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11313498
    5731 1i3q:I (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11313498
    5732 1i3q:I (3.1) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11313498
    5733 1i3q:J (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11313498
    5734 1i3q:L (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11313498
    5735 1i40:A (1.1) BS01 CA 3.6.1.1 GO:0000287 ... P0A7A9 11846572
    5736 1i40:A (1.1) BS02 CA 3.6.1.1 GO:0000287 ... P0A7A9 11846572
    5737 1i40:A (1.1) BS03 CA 3.6.1.1 GO:0000287 ... P0A7A9 11846572
    5738 1i4a:A (2.0) BS01 CA ? GO:0001786 ... P13214 11300800
    5739 1i4a:A (2.0) BS02 CA ? GO:0001786 ... P13214 11300800
    5740 1i4g:A (2.1) BS01 ZN ? GO:0005515 ... P0A0L2 11713682
    5741 1i4h:A (2.9) BS01 ZN ? GO:0005515 ... P0A0L2 11713682
    5742 1i4h:B (2.9) BS01 ZN ? GO:0005515 ... P0A0L2 11713682
    5743 1i4p:A (2.0) BS01 ZN ? GO:0005576 ... P34071 11526318
    5744 1i4q:A (2.2) BS01 ZN ? GO:0005576 ... P34071 11526318
    5745 1i4r:A (2.1) BS01 ZN ? GO:0005576 ... P34071 11526318
    5746 1i4x:A (2.4) BS01 ZN ? GO:0005576 ... P34071 11526318
    5747 1i50:A (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 11313498
    5748 1i50:A (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11313498
    5749 1i50:A (2.8) BS03 MN 2.7.7.6 GO:0000428 ... P04050 11313498
    5750 1i50:B (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 11313498
    5751 1i50:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11313498
    5752 1i50:I (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11313498
    5753 1i50:I (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11313498
    5754 1i50:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11313498
    5755 1i50:L (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11313498
    5756 1i53:A (1.8) BS01 CU ? GO:0005507 ... P00282 11457048
    5757 1i53:B (1.8) BS01 CU ? GO:0005507 ... P00282 11457048
    5758 1i5a:A (1.9) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    5759 1i5a:B (1.9) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    5760 1i5b:A (1.94) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    5761 1i5b:B (1.94) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    5762 1i5o:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 11323717
    5763 1i5o:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 11323717
    5764 1i6h:A (3.3) BS03 MG 2.7.7.6 GO:0000428 ... P04050 11313499
    5765 1i6h:A (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 11313499
    5766 1i6h:B (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 11313499
    5767 1i6h:C (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11313499
    5768 1i6h:I (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11313499
    5769 1i6h:I (3.3) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11313499
    5770 1i6h:J (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11313499
    5771 1i6h:L (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11313499
    5772 1i6n:A (1.8) BS01 ZN 5.3.99.11 GO:0016853 ... P42419 12112707
    5773 1i6o:A (2.2) BS01 ZN 4.2.1.1 GO:0004089 ... P61517 11316870
    5774 1i6o:B (2.2) BS01 ZN 4.2.1.1 GO:0004089 ... P61517 11316870
    5775 1i6p:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P61517 11316870
    5776 1i6q:A (2.7) BS01 FE 3.4.21.- GO:0001503 ... Q9TUM0 11473113
    5777 1i6q:A (2.7) BS02 FE 3.4.21.- GO:0001503 ... Q9TUM0 11473113
    5778 1i6t:A (1.2) BS01 CA 3.6.1.1 GO:0000287 ... P0A7A9 11846572
    5779 1i6t:A (1.2) BS02 CA 3.6.1.1 GO:0000287 ... P0A7A9 11846572
    5780 1i6v:D (3.3) BS01 MG 2.7.7.6 GO:0003677 ... Q9KWU6 11290327
    5781 1i6v:D (3.3) BS02 ZN 2.7.7.6 GO:0003677 ... Q9KWU6 11290327
    5782 1i73:A (1.4) BS02 CA 3.4.24.34 GO:0004222 ... P22894 10978185
    5783 1i73:A (1.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 10978185
    5784 1i73:A (1.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 10978185
    5785 1i73:A (1.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 10978185
    5786 1i74:A (2.2) BS01 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    5787 1i74:A (2.2) BS02 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    5788 1i74:B (2.2) BS01 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    5789 1i74:B (2.2) BS02 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    5790 1i75:A (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P05618 11275559
    5791 1i75:A (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P05618 11275559
    5792 1i75:B (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P05618 11275559
    5793 1i75:B (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P05618 11275559
    5794 1i76:A (1.2) BS01 CA 3.4.24.34 GO:0004222 ... P22894 10978185
    5795 1i76:A (1.2) BS02 CA 3.4.24.34 GO:0004222 ... P22894 10978185
    5796 1i76:A (1.2) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 10978185
    5797 1i76:A (1.2) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 10978185
    5798 1i7o:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 N/A
    5799 1i7o:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 N/A
    5800 1i7o:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218