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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 1g49:A (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    4202 1g49:A (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    4203 1g49:A (1.9) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    4204 1g49:B (1.9) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11150165
    4205 1g49:B (1.9) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11150165
    4206 1g49:B (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    4207 1g49:B (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    4208 1g49:B (1.9) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    4209 1g4c:B (1.65) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    4210 1g4c:B (1.65) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    4211 1g4h:A (1.8) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    4212 1g4i:A (0.97) BS01 CA 3.1.1.4 GO:0002227 ... P00593 11264580
    4213 1g4j:A (1.84) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4214 1g4k:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11316871
    4215 1g4k:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11316871
    4216 1g4k:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4217 1g4k:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4218 1g4k:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4219 1g4k:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11316871
    4220 1g4k:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11316871
    4221 1g4k:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4222 1g4k:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4223 1g4k:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4224 1g4k:C (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11316871
    4225 1g4k:C (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11316871
    4226 1g4k:C (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4227 1g4k:C (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4228 1g4k:C (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    4229 1g4o:A (1.96) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4230 1g4p:A (2.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4231 1g4p:B (2.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4232 1g4s:A (1.7) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4233 1g4s:B (1.7) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4234 1g4t:A (1.55) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4235 1g4t:B (1.55) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4236 1g4u:R (2.3) BS01 MG 3.6.5.2 GO:0001764 ... P63000 11163217
    4237 1g4y:R (1.6) BS01 CA ? GO:0000086 ... P0DP29 11323678
    4238 1g4y:R (1.6) BS02 CA ? GO:0000086 ... P0DP29 11323678
    4239 1g52:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4240 1g53:A (1.94) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4241 1g54:A (1.86) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4242 1g58:A (1.55) BS01 AU 4.1.99.12 GO:0000287 ... P0A7J0 11342130
    4243 1g5b:A (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    4244 1g5b:A (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    4245 1g5b:B (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    4246 1g5b:B (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    4247 1g5b:C (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    4248 1g5b:C (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    4249 1g5c:A (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    4250 1g5c:B (2.1) BS02 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    4251 1g5c:C (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    4252 1g5c:D (2.1) BS02 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    4253 1g5c:E (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    4254 1g5c:F (2.1) BS02 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    4255 1g5c:F (2.1) BS03 CA 4.2.1.1 GO:0004089 ... Q50565 11096105
    4256 1g5f:A (1.8) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    4257 1g5n:A (1.9) BS07 CA ? GO:0001786 ... P14668 11342135
    4258 1g5n:A (1.9) BS08 CA ? GO:0001786 ... P14668 11342135
    4259 1g5n:A (1.9) BS09 CA ? GO:0001786 ... P14668 11342135
    4260 1g5n:A (1.9) BS10 CA ? GO:0001786 ... P14668 11342135
    4261 1g5n:A (1.9) BS11 CA ? GO:0001786 ... P14668 11342135
    4262 1g5n:A (1.9) BS12 CA ? GO:0001786 ... P14668 11342135
    4263 1g5n:A (1.9) BS13 CA ? GO:0001786 ... P14668 11342135
    4264 1g5n:A (1.9) BS14 CA ? GO:0001786 ... P14668 11342135
    4265 1g5n:A (1.9) BS15 CA ? GO:0001786 ... P14668 11342135
    4266 1g5t:A (1.8) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    4267 1g64:A (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    4268 1g64:B (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    4269 1g65:G (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P21243 N/A
    4270 1g65:H (2.25) BS01 MG 3.4.25.1 GO:0004298 ... P25043 N/A
    4271 1g65:I (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P25451 N/A
    4272 1g65:K (2.25) BS02 MG 3.4.25.1 GO:0004298 ... P30656 N/A
    4273 1g65:L (2.25) BS02 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    4274 1g65:L (2.25) BS03 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    4275 1g65:N (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P38624 N/A
    4276 1g67:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4277 1g67:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4278 1g69:A (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4279 1g69:B (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4280 1g6c:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4281 1g6c:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4282 1g6c:B (1.4) BS02 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    4283 1g6v:A (3.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 11342547
    4284 1g71:A (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    4285 1g71:B (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    4286 1g72:A (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    4287 1g72:C (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    4288 1g73:C (2.0) BS01 ZN 2.3.2.27 N/A P98170 11140638
    4289 1g73:D (2.0) BS01 ZN 2.3.2.27 N/A P98170 11140638
    4290 1g7y:A (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    4291 1g7y:A (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    4292 1g7y:B (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    4293 1g7y:B (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    4294 1g7y:C (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    4295 1g7y:C (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    4296 1g7y:D (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    4297 1g7y:D (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    4298 1g7y:E (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    4299 1g7y:E (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    4300 1g7y:F (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    4301 1g7y:F (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    4302 1g87:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4303 1g87:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4304 1g87:B (1.6) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4305 1g87:B (1.6) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4306 1g8f:A (1.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    4307 1g8g:A (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    4308 1g8g:B (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    4309 1g8h:A (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    4310 1g8h:B (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    4311 1g8i:A (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    4312 1g8i:A (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    4313 1g8i:A (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    4314 1g8i:B (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    4315 1g8i:B (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    4316 1g8i:B (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    4317 1g8k:A (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    4318 1g8k:C (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    4319 1g8k:E (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    4320 1g8k:G (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    4321 1g8o:A (2.3) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    4322 1g8w:A (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    4323 1g8w:A (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    4324 1g8w:B (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    4325 1g8w:B (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    4326 1g8w:C (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    4327 1g8w:C (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    4328 1g8w:D (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    4329 1g8w:D (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    4330 1g8x:A (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799    		 11226153
    4331 1g8x:B (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799    		 11226153
    4332 1g93:A (2.5) BS02 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    4333 1g94:A (1.74) BS05 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    4334 1g97:A (1.96) BS01 MG 2.3.1.157
    2.7.7.23    		 GO:0000287 ... Q97R46 11124906
    4335 1g9a:A (2.1) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    4336 1g9b:A (2.0) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    4337 1g9c:A (2.35) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    4338 1g9d:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    4339 1g9f:A (2.5) BS02 MN ? GO:0030246 ... P05046 11491289
    4340 1g9f:A (2.5) BS03 CA ? GO:0030246 ... P05046 11491289
    4341 1g9g:A (1.9) BS01 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    4342 1g9g:A (1.9) BS02 MG 3.2.1.4 GO:0004553 ... P37698 18035374
    4343 1g9h:A (1.8) BS03 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    4344 1g9i:E (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 11257512
    4345 1g9j:A (1.9) BS08 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    4346 1g9j:A (1.9) BS09 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    4347 1g9k:A (1.96) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    4348 1g9k:A (1.96) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    4349 1g9k:A (1.96) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    4350 1g9k:A (1.96) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    4351 1g9k:A (1.96) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    4352 1g9k:A (1.96) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    4353 1g9k:A (1.96) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    4354 1g9k:A (1.96) BS08 ZN 3.4.24.40 GO:0004222 ... O69771 12577270
    4355 1g9r:A (2.0) BS01 MN 2.4.1.- GO:0016740 ... Q93EK7 11175908
    4356 1g9u:A (2.35) BS01 CA ? GO:0005576 ... P17778 11575934
    4357 1g9x:B (2.6) BS01 MG ? GO:0005524 ... Q58663 12554933
    4358 1g9y:B (2.05) BS03 CA 3.1.-.- GO:0004519 ... P05725 11276249
    4359 1ga1:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11173470
    4360 1ga2:A (1.7) BS05 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4361 1ga2:A (1.7) BS06 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4362 1ga2:B (1.7) BS03 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4363 1ga2:B (1.7) BS04 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    4364 1ga4:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    4365 1ga5:A (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    4366 1ga5:A (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    4367 1ga5:B (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    4368 1ga5:B (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    4369 1ga5:E (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    4370 1ga5:E (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    4371 1ga5:F (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    4372 1ga5:F (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    4373 1ga6:A (1.0) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    4374 1ga8:A (2.0) BS02 MN 2.4.1.44 GO:0016740 ... Q93EK7 11175908
    4375 1gag:A (2.7) BS02 MG 2.7.10.1 GO:0004672 ... P06213 11135668
    4376 1gat:A (-1.00) BS03 ZN ? GO:0003700 ... P17678 8332909
    4377 1gax:A (2.9) BS02 ZN 6.1.1.9 GO:0000166 ... P96142 11114335
    4378 1gax:A (2.9) BS03 ZN 6.1.1.9 GO:0000166 ... P96142 11114335
    4379 1gax:B (2.9) BS02 ZN 6.1.1.9 GO:0000166 ... P96142 11114335
    4380 1gax:B (2.9) BS03 ZN 6.1.1.9 GO:0000166 ... P96142 11114335
    4381 1gbg:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P27051 7589539
    4382 1gbt:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 2252895
    4383 1gca:A (1.7) BS02 CA ? GO:0006935 ... P23905 8240551
    4384 1gcg:A (1.9) BS01 CA ? GO:0006935 ... P23905 8132630
    4385 1gci:A (0.78) BS01 CA 3.4.21.62 GO:0004252 ... P29600 9753430
    4386 1gci:A (0.78) BS02 CA 3.4.21.62 GO:0004252 ... P29600 9753430
    4387 1gcy:A (1.6) BS01 CA 3.2.1.60 GO:0004556 ... P13507 11272837
    4388 1gcy:A (1.6) BS02 CA 3.2.1.60 GO:0004556 ... P13507 11272837
    4389 1gdc:A (-1.00) BS01 ZN ? GO:0003700 ... P06536 8257681
    4390 1gdc:A (-1.00) BS02 ZN ? GO:0003700 ... P06536 8257681
    4391 1ge5:A (2.0) BS01 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    4392 1ge6:A (2.2) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    4393 1ge7:A (2.0) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    4394 1ge7:B (2.0) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    4395 1gen:A (2.15) BS01 CA 3.4.24.24 N/A P08253 7583664
    4396 1gfi:A (2.2) BS01 MG ? GO:0000287 ... P10824 8073283
    4397 1gg1:A (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    4398 1gg1:B (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    4399 1gg1:C (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    4400 1gg1:D (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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