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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 1e6a:B (1.9) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    2802 1e6a:B (1.9) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    2803 1e6d:L (2.3) BS07 FE ? GO:0009772 ... P0C0Y8 11042110
    2804 1e6d:M (2.3) BS06 FE ? GO:0009772 ... P0C0Y9 11042110
    2805 1e6q:M (1.35) BS04 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2806 1e6s:M (1.35) BS02 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2807 1e6x:M (1.6) BS02 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2808 1e70:M (1.65) BS02 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2809 1e71:M (1.5) BS02 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2810 1e72:M (1.6) BS03 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2811 1e73:M (1.5) BS05 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2812 1e7d:A (2.8) BS01 ZN 3.1.-.- GO:0004519 ... P13340 11327769
    2813 1e7d:A (2.8) BS02 CA 3.1.-.- GO:0004519 ... P13340 11327769
    2814 1e7d:B (2.8) BS01 ZN 3.1.-.- GO:0004519 ... P13340 11327769
    2815 1e7d:B (2.8) BS02 CA 3.1.-.- GO:0004519 ... P13340 11327769
    2816 1e7l:A (1.32) BS01 ZN 3.1.-.- GO:0004519 ... P13340 11327769
    2817 1e7l:B (1.32) BS01 ZN 3.1.-.- GO:0004519 ... P13340 11327769
    2818 1e8a:A (1.95) BS01 CA ? GO:0002548 ... P80511 11134923
    2819 1e8a:A (1.95) BS02 CA ? GO:0002548 ... P80511 11134923
    2820 1e8a:B (1.95) BS01 CA ? GO:0002548 ... P80511 11134923
    2821 1e8a:B (1.95) BS02 CA ? GO:0002548 ... P80511 11134923
    2822 1e8t:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    2823 1e8u:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    2824 1e8u:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    2825 1e8v:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    2826 1e8v:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    2827 1e96:A (2.4) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11090627
    2828 1e9g:A (1.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    2829 1e9g:A (1.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    2830 1e9g:B (1.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    2831 1e9g:B (1.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    2832 1e9i:A (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    2833 1e9i:B (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    2834 1e9i:C (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    2835 1e9i:D (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    2836 1e9o:A (1.85) BS01 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2837 1e9o:A (1.85) BS02 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2838 1e9o:B (1.85) BS01 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2839 1e9o:B (1.85) BS02 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2840 1e9p:A (1.7) BS01 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2841 1e9p:A (1.7) BS02 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2842 1e9p:B (1.7) BS01 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2843 1e9p:B (1.7) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 11080458
    2844 1e9q:A (1.75) BS01 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2845 1e9q:A (1.75) BS02 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2846 1e9q:B (1.75) BS01 CU 1.15.1.1 GO:0000209 ... P00442 11080458
    2847 1e9q:B (1.75) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 11080458
    2848 1ea7:A (0.93) BS01 CA ? GO:0004252 ... Q9S3L6 14499610
    2849 1ea7:A (0.93) BS02 CA ? GO:0004252 ... Q9S3L6 14499610
    2850 1ea7:A (0.93) BS03 CA ? GO:0004252 ... Q9S3L6 14499610
    2851 1ea7:A (0.93) BS04 CA ? GO:0004252 ... Q9S3L6 14499610
    2852 1eak:A (2.66) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2853 1eak:A (2.66) BS03 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2854 1eak:A (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2855 1eak:A (2.66) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2856 1eak:B (2.66) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2857 1eak:B (2.66) BS03 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2858 1eak:B (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2859 1eak:B (2.66) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2860 1eak:C (2.66) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2861 1eak:C (2.66) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2862 1eak:C (2.66) BS03 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2863 1eak:C (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2864 1eak:D (2.66) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2865 1eak:D (2.66) BS03 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    2866 1eak:D (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2867 1eak:D (2.66) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    2868 1eb2:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11881991
    2869 1eb3:A (1.75) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11513881
    2870 1eb6:A (1.0) BS01 ZN 3.4.24.39 GO:0004222 ... P46076 11679721
    2871 1eb7:A (2.4) BS03 CA 1.11.1.5 GO:0004130 ... P14532 8591033
    2872 1ebg:A (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8049235
    2873 1ebg:B (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8049235
    2874 1ebh:A (1.9) BS01 MG 4.2.1.11 GO:0000015 ... P00924 7703246
    2875 1ebh:B (1.9) BS01 MG 4.2.1.11 GO:0000015 ... P00924 7703246
    2876 1ec5:A (2.5) BS01 ZN N/A N/A N/A 10841536
    2877 1ec5:B (2.5) BS01 ZN N/A N/A N/A 10841536
    2878 1ec5:C (2.5) BS01 ZN N/A N/A N/A 10841536
    2879 1ec5:C (2.5) BS02 ZN N/A N/A N/A 10841536
    2880 1ec7:A (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2881 1ec7:B (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2882 1ec7:C (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2883 1ec7:D (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2884 1ec8:A (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2885 1ec8:B (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2886 1ec8:C (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2887 1ec8:D (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2888 1ec9:A (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2889 1ec9:B (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2890 1ec9:C (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2891 1ec9:D (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2892 1ecb:A (2.7) BS01 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    2893 1ecb:B (2.7) BS02 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    2894 1ecb:C (2.7) BS01 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    2895 1ecb:D (2.7) BS02 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    2896 1ecc:B (2.4) BS01 MN 2.4.2.14 GO:0000287 ... P0AG16 9333323
    2897 1ecq:A (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2898 1ecq:B (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2899 1ecq:C (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2900 1ecq:D (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    2901 1ed4:A (1.86) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    2902 1ed4:B (1.86) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    2903 1ed5:A (1.8) BS03 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    2904 1ed5:B (1.8) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    2905 1ed6:A (2.05) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    2906 1ed6:B (2.05) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    2907 1ed8:A (1.75) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2908 1ed8:A (1.75) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2909 1ed8:A (1.75) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2910 1ed8:A (1.75) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    2911 1ed8:B (1.75) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2912 1ed8:B (1.75) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2913 1ed8:B (1.75) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2914 1ed8:B (1.75) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    2915 1ed9:A (1.75) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2916 1ed9:A (1.75) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2917 1ed9:A (1.75) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    2918 1ed9:B (1.75) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2919 1ed9:B (1.75) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10873454
    2920 1ed9:B (1.75) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    2921 1edh:A (2.0) BS01 CA ? GO:0005509 ... P09803 8598933
    2922 1edh:A (2.0) BS02 CA ? GO:0005509 ... P09803 8598933
    2923 1edh:A (2.0) BS03 CA ? GO:0005509 ... P09803 8598933
    2924 1edh:B (2.0) BS01 CA ? GO:0005509 ... P09803 8598933
    2925 1edh:B (2.0) BS02 CA ? GO:0005509 ... P09803 8598933
    2926 1edh:B (2.0) BS03 CA ? GO:0005509 ... P09803 8598933
    2927 1edm:B (1.5) BS01 CA 3.4.21.22 GO:0005509 ... P00740 7606779
    2928 1edm:C (1.5) BS01 CA 3.4.21.22 GO:0005509 ... P00740 7606779
    2929 1ee2:A (1.54) BS01 ZN 1.1.1.1 GO:0004022 ... P00328 11041853
    2930 1ee2:A (1.54) BS02 ZN 1.1.1.1 GO:0004022 ... P00328 11041853
    2931 1ee2:B (1.54) BS01 ZN 1.1.1.1 GO:0004022 ... P00328 11041853
    2932 1ee2:B (1.54) BS02 ZN 1.1.1.1 GO:0004022 ... P00328 11041853
    2933 1ee3:P (1.7) BS01 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    2934 1ee3:P (1.7) BS02 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    2935 1ee6:A (2.3) BS01 CA 4.2.2.2 GO:0004650 ... Q9RHW0 11717490
    2936 1ee8:A (1.9) BS01 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... O50606 10921868
    2937 1ee8:B (1.9) BS01 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... O50606 10921868
    2938 1ef0:A (2.1) BS01 ZN 3.1.-.-
    7.1.2.2    		 GO:0003677 ... P17255 10828056
    2939 1ef0:B (2.1) BS01 ZN 3.1.-.-
    7.1.2.2    		 GO:0003677 ... P17255 10828056
    2940 1ef2:A (2.5) BS01 MN 3.5.1.5 GO:0005515 ... P18314 10555581
    2941 1ef2:A (2.5) BS02 MN 3.5.1.5 GO:0005515 ... P18314 10555581
    2942 1ef4:A (-1.00) BS01 ZN 2.7.7.6 GO:0000428 ... O26147 10841539
    2943 1efk:A (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2944 1efk:B (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2945 1efk:C (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2946 1efk:D (2.6) BS02 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2947 1efl:A (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2948 1efl:B (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2949 1efl:C (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2950 1efl:D (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    2951 1eft:A (2.5) BS01 MG ? GO:0003746 ... Q01698 8069622
    2952 1efz:A (2.0) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 10413112
    2953 1eg9:A (1.6) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 10669618
    2954 1egg:A (2.3) BS01 CA ? N/A P22897 10779515
    2955 1egg:B (2.3) BS01 CA ? N/A P22897 10779515
    2956 1egi:A (2.3) BS01 CA ? N/A P22897 10779515
    2957 1egi:B (2.3) BS01 CA ? N/A P22897 10779515
    2958 1egn:A (1.6) BS01 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    2959 1egn:A (1.6) BS02 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    2960 1egq:A (1.55) BS01 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    2961 1egq:A (1.55) BS02 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    2962 1egz:A (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    2963 1egz:B (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    2964 1egz:C (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    2965 1eh2:A (-1.00) BS01 CA ? GO:0005509 ... P42566 9721102
    2966 1eh3:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 10828980
    2967 1eh6:A (2.0) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    2968 1eh7:A (2.0) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    2969 1eh8:A (2.5) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    2970 1ehi:A (2.38) BS01 MG 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    2971 1ehk:A (2.4) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    2972 1ei6:A (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2973 1ei6:A (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2974 1ei6:B (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2975 1ei6:B (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2976 1ei6:C (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2977 1ei6:C (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2978 1ei6:D (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2979 1ei6:D (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    2980 1eil:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    2981 1eiq:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    2982 1eir:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    2983 1ej6:C (3.6) BS01 ZN 3.6.4.13 GO:0003724 ... P15024 10801118
    2984 1ej8:A (1.55) BS01 CA ? GO:0006801 ... P40202 10736160
    2985 1eja:A (2.7) BS01 NA 3.4.21.4 GO:0004252 ... P00761 10771427
    2986 1ejj:A (1.9) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 10747010
    2987 1ejj:A (1.9) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 10747010
    2988 1ejr:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2989 1ejr:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2990 1ejs:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2991 1ejs:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2992 1ejt:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2993 1ejt:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2994 1eju:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2995 1eju:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2996 1ejv:C (2.4) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2997 1ejv:C (2.4) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    2998 1ek0:A (1.48) BS01 MG ? GO:0003924 ... P36017 10756108
    2999 1ek3:A (1.9) BS01 CA ? GO:0002250 ... P06312 N/A
    3000 1ek3:A (1.9) BS02 CA ? GO:0002250 ... P06312 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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