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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 1did:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    2402 1did:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    2403 1did:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    2404 1did:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    2405 1die:A (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    2406 1die:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    2407 1die:B (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    2408 1die:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    2409 1dio:A (2.2) BS01 K 4.2.1.28 GO:0003824 ... Q59470 10467140
    2410 1dio:L (2.2) BS01 K 4.2.1.28 GO:0003824 ... Q59470 10467140
    2411 1djg:A (2.6) BS01 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2412 1djg:A (2.6) BS02 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2413 1djg:A (2.6) BS03 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2414 1djg:A (2.6) BS04 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2415 1djg:B (2.6) BS01 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2416 1djg:B (2.6) BS02 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2417 1djg:B (2.6) BS03 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2418 1djg:B (2.6) BS04 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    2419 1djh:A (2.5) BS01 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    2420 1djh:A (2.5) BS02 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    2421 1djh:A (2.5) BS03 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    2422 1djh:B (2.5) BS01 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    2423 1djh:B (2.5) BS02 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    2424 1djh:B (2.5) BS03 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    2425 1dji:A (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    2426 1dji:A (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    2427 1dji:A (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    2428 1dji:B (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    2429 1dji:B (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    2430 1dji:B (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    2431 1djw:A (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2432 1djw:A (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2433 1djw:A (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2434 1djw:B (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2435 1djw:B (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2436 1djw:B (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2437 1djx:A (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2438 1djx:A (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2439 1djx:B (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2440 1djx:B (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2441 1djy:A (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2442 1djy:A (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2443 1djy:A (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2444 1djy:B (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2445 1djy:B (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2446 1djy:B (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2447 1djz:A (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2448 1djz:A (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2449 1djz:B (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2450 1djz:B (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    2451 1dk4:A (2.6) BS01 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    2452 1dk4:A (2.6) BS02 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    2453 1dk4:B (2.6) BS01 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    2454 1dk4:B (2.6) BS02 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    2455 1dka:A (2.6) BS01 K 4.1.1.64 GO:0008453 ... P16932 8342040
    2456 1dl6:A (-1.00) BS01 ZN 2.3.1.48 GO:0006352 ... Q00403 11045620
    2457 1dlm:A (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2458 1dlm:B (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2459 1dlq:A (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2460 1dlq:B (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2461 1dlt:A (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2462 1dlt:B (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2463 1dm5:A (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    2464 1dm5:A (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    2465 1dm5:B (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    2466 1dm5:B (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    2467 1dm5:C (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    2468 1dm5:C (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    2469 1dm5:D (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    2470 1dm5:D (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    2471 1dm5:E (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    2472 1dm5:E (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    2473 1dm5:F (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    2474 1dm6:A (1.95) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    2475 1dm6:B (1.95) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    2476 1dm7:A (2.1) BS03 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    2477 1dm7:B (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    2478 1dm8:A (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    2479 1dm8:B (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    2480 1dmc:A (-1.00) BS01 CD ? GO:0046872 ... P55949 7819257
    2481 1dmc:A (-1.00) BS02 CD ? GO:0046872 ... P55949 7819257
    2482 1dmc:A (-1.00) BS03 CD ? GO:0046872 ... P55949 7819257
    2483 1dmd:A (-1.00) BS01 CD ? GO:0046872 ... P55949 7819257
    2484 1dmd:A (-1.00) BS02 CD ? GO:0046872 ... P55949 7819257
    2485 1dmd:A (-1.00) BS03 CD ? GO:0046872 ... P55949 7819257
    2486 1dmh:A (1.7) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2487 1dmh:B (1.7) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    2488 1dmi:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    2489 1dmi:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    2490 1dmj:A (2.35) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    2491 1dmj:B (2.35) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    2492 1dmk:A (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    2493 1dmk:B (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    2494 1dmt:A (2.1) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 10669592
    2495 1dmu:A (2.2) BS02 CA 3.1.21.4 GO:0004519 ... O68557 9736624
    2496 1dmu:A (2.2) BS03 CA 3.1.21.4 GO:0004519 ... O68557 9736624
    2497 1dmw:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 10694386
    2498 1dmx:A (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    2499 1dmx:B (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    2500 1dmy:A (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    2501 1dmy:B (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    2502 1dnu:C (1.85) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2503 1dnu:D (1.85) BS05 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2504 1dnw:C (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2505 1dnw:D (1.9) BS05 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2506 1do5:A (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    2507 1do5:B (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    2508 1do5:C (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    2509 1do5:D (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    2510 1do6:A (2.0) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    2511 1do6:B (2.0) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    2512 1do8:A (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    2513 1do8:B (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    2514 1do8:C (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    2515 1do8:D (2.2) BS03 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    2516 1doa:A (2.6) BS01 MG 3.6.5.2 GO:0000139 ... P60953 10676816
    2517 1dos:A (1.67) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 8836102
    2518 1dos:B (1.67) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 8836102
    2519 1dot:A (2.35) BS01 FE ? GO:0005576 ... P56410 15299626
    2520 1dot:A (2.35) BS02 FE ? GO:0005576 ... P56410 15299626
    2521 1dp0:A (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2522 1dp0:A (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2523 1dp0:B (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2524 1dp0:B (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2525 1dp0:C (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2526 1dp0:C (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2527 1dp0:D (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2528 1dp0:D (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    2529 1dpm:A (2.1) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 8634243
    2530 1dpm:A (2.1) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 8634243
    2531 1dpm:B (2.1) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 8634243
    2532 1dpm:B (2.1) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 8634243
    2533 1dpo:A (1.59) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1881877
    2534 1dpy:A (2.45) BS01 NA 3.1.1.4 GO:0004623 ... Q9DF52 11286555
    2535 1dq1:A (2.15) BS01 CA ? GO:0005537 ... P55915 10748006
    2536 1dq1:A (2.15) BS02 CA ? GO:0005537 ... P55915 10748006
    2537 1dq3:A (2.1) BS01 ZN 1.17.4.1
    3.1.-.-
    GO:0004519 ... E7FHX6 10891276
    2538 1dq4:A (2.9) BS01 MN ? GO:0005537 ... P55915 10748006
    2539 1dq4:A (2.9) BS02 MN ? GO:0005537 ... P55915 10748006
    2540 1dq4:B (2.9) BS01 MN ? GO:0005537 ... P55915 10748006
    2541 1dq4:B (2.9) BS02 MN ? GO:0005537 ... P55915 10748006
    2542 1dq5:A (2.0) BS01 MN ? GO:0005537 ... P55915 10748006
    2543 1dq5:A (2.0) BS02 MN ? GO:0005537 ... P55915 10748006
    2544 1dq6:A (1.9) BS01 MN ? GO:0030246 ... P02866 10748006
    2545 1dq6:A (1.9) BS02 MN ? GO:0030246 ... P02866 10748006
    2546 1dqi:A (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    2547 1dqi:B (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    2548 1dqi:C (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    2549 1dqi:D (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    2550 1dqk:A (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    2551 1dqk:B (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    2552 1dqk:C (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    2553 1dqk:D (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    2554 1dqn:A (1.75) BS01 MG 2.4.2.8 GO:0000166 ... Q24973 10841757
    2555 1dqs:A (1.8) BS01 ZN 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4
    GO:0003856 ... P07547 9685163
    2556 1dqs:B (1.8) BS01 ZN 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4
    GO:0003856 ... P07547 9685163
    2557 1dqv:A (3.2) BS01 MG ? GO:0016020 ... P40748 10545502
    2558 1drt:A (2.1) BS02 FE2 1.14.11.21 GO:0005506 ... Q05581 10655615
    2559 1dry:A (1.4) BS02 FE2 1.14.11.21 GO:0005506 ... Q05581 10655615
    2560 1ds1:A (1.08) BS01 FE2 1.14.11.21 GO:0005506 ... Q05581 10655615
    2561 1ds5:B (3.16) BS03 MG 2.7.11.1 GO:0004672 ... P28523 10931203
    2562 1ds6:A (2.35) BS01 MG ? GO:0003924 ... P15153 10655614
    2563 1ds8:L (2.5) BS06 FE2 ? GO:0009772 ... P0C0Y8 10677497
    2564 1ds8:M (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y9 10677497
    2565 1ds8:R (2.5) BS06 FE2 ? GO:0009772 ... P0C0Y8 10677497
    2566 1ds8:S (2.5) BS04 FE2 ? GO:0009772 ... P0C0Y9 10677497
    2567 1dsn:A (2.05) BS01 FE 3.4.21.- GO:0005576 ... P02788 8594202
    2568 1dsv:A (-1.00) BS01 ZN ? GO:0003676 ... P11284 10677209
    2569 1dsw:A (-1.00) BS01 CU 1.15.1.1 GO:0000302 ... P00441 10631612
    2570 1dsw:A (-1.00) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 10631612
    2571 1dsy:A (2.6) BS01 CA 2.7.11.13 N/A P05696 10562545
    2572 1dsy:A (2.6) BS02 CA 2.7.11.13 N/A P05696 10562545
    2573 1dsz:A (1.7) BS03 ZN ? GO:0003700 ... P10276 10698945
    2574 1dsz:A (1.7) BS04 ZN ? GO:0003700 ... P10276 10698945
    2575 1dsz:B (1.7) BS03 ZN ? GO:0003700 ... P19793 10698945
    2576 1dsz:B (1.7) BS04 ZN ? GO:0003700 ... P19793 10698945
    2577 1dt0:A (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 11053832
    2578 1dt0:B (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 11053832
    2579 1dt0:C (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 11053832
    2580 1dt7:A (-1.00) BS02 CA ? GO:0001726 ... P04631 10876243
    2581 1dt7:A (-1.00) BS03 CA ? GO:0001726 ... P04631 10876243
    2582 1dt7:B (-1.00) BS02 CA ? GO:0001726 ... P04631 10876243
    2583 1dt7:B (-1.00) BS03 CA ? GO:0001726 ... P04631 10876243
    2584 1dtd:A (1.65) BS01 ZN 3.4.17.15 GO:0004181 ... P48052 10742178
    2585 1dtg:A (2.4) BS01 FE ? GO:0005576 ... P02787 10684598
    2586 1dth:A (2.0) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8610113
    2587 1dth:A (2.0) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8610113
    2588 1dth:B (2.0) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8610113
    2589 1dth:B (2.0) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8610113
    2590 1dtl:A (2.15) BS01 CA ? GO:0003009 ... P09860 10792039
    2591 1dtl:A (2.15) BS02 CA ? GO:0003009 ... P09860 10792039
    2592 1dtl:A (2.15) BS03 CA ? GO:0003009 ... P09860 10792039
    2593 1dtn:A (2.1) BS01 MG 5.1.2.2 GO:0000287 ... P11444 7893689
    2594 1dtu:A (2.4) BS10 CA 2.4.1.19 GO:0003824 ... P43379 10686101
    2595 1dtu:A (2.4) BS11 CA 2.4.1.19 GO:0003824 ... P43379 10686101
    2596 1dtw:A (2.7) BS01 MG 1.2.4.4 GO:0003863 ... P12694 10745006
    2597 1dtw:A (2.7) BS02 K 1.2.4.4 GO:0003863 ... P12694 10745006
    2598 1dtw:B (2.7) BS01 K 1.2.4.4 GO:0003824 ... P21953 10745006
    2599 1dv3:L (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    2600 1dv3:M (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218