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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 1d5j:A (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10579818
    2202 1d5j:A (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10579818
    2203 1d5j:A (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    2204 1d5j:A (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    2205 1d5j:A (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    2206 1d5j:B (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10579818
    2207 1d5j:B (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10579818
    2208 1d5j:B (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    2209 1d5j:B (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    2210 1d5j:B (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    2211 1d5l:C (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2212 1d5l:D (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2213 1d5n:A (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    2214 1d5n:B (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    2215 1d5n:C (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    2216 1d5n:D (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    2217 1d6n:A (2.7) BS01 MG 2.4.2.8 GO:0000166 ... P00492 10338013
    2218 1d6u:A (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10576737
    2219 1d6u:A (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2220 1d6u:A (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2221 1d6u:B (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10576737
    2222 1d6u:B (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2223 1d6u:B (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2224 1d6y:A (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10576737
    2225 1d6y:A (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2226 1d6y:A (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2227 1d6y:B (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10576737
    2228 1d6y:B (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2229 1d6y:B (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2230 1d6z:A (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10576737
    2231 1d6z:A (2.1) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2232 1d6z:A (2.1) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2233 1d6z:B (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10576737
    2234 1d6z:B (2.1) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2235 1d6z:B (2.1) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    2236 1d7f:A (1.9) BS01 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    2237 1d7f:A (1.9) BS02 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    2238 1d7f:B (1.9) BS01 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    2239 1d7f:B (1.9) BS02 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    2240 1d7r:A (2.0) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    2241 1d7s:A (2.05) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    2242 1d7u:A (1.95) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    2243 1d7v:A (2.8) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    2244 1d7w:C (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2245 1d7w:D (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    2246 1d7x:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10639284
    2247 1d7x:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10639284
    2248 1d7x:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    2249 1d7x:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    2250 1d7x:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    2251 1d7x:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10639284
    2252 1d7x:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10639284
    2253 1d7x:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    2254 1d7x:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    2255 1d7x:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    2256 1d8c:A (2.0) BS02 MG 2.3.3.9 GO:0000287 ... P37330 10715138
    2257 1d8d:B (2.0) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 10673434
    2258 1d8f:A (2.4) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10669564
    2259 1d8f:A (2.4) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10669564
    2260 1d8f:A (2.4) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    2261 1d8f:A (2.4) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    2262 1d8f:A (2.4) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    2263 1d8f:B (2.4) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10669564
    2264 1d8f:B (2.4) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10669564
    2265 1d8f:B (2.4) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    2266 1d8f:B (2.4) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    2267 1d8f:B (2.4) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    2268 1d8h:A (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    2269 1d8h:B (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    2270 1d8h:C (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    2271 1d8m:A (2.44) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    2272 1d8m:A (2.44) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    2273 1d8m:A (2.44) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    2274 1d8m:A (2.44) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    2275 1d8m:A (2.44) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    2276 1d8m:B (2.44) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    2277 1d8m:B (2.44) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    2278 1d8m:B (2.44) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    2279 1d8m:B (2.44) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    2280 1d8m:B (2.44) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    2281 1d8w:A (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2282 1d8w:B (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2283 1d8w:C (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2284 1d8w:D (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2285 1d8y:A (2.08) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 10588690
    2286 1d9d:A (2.18) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 10588690
    2287 1d9d:A (2.18) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 10588690
    2288 1d9d:A (2.18) BS04 MG 2.7.7.7 GO:0003676 ... P00582 10588690
    2289 1d9y:A (2.2) BS01 FE ? GO:0006826 ... Q50964 N/A
    2290 1dah:A (1.64) BS01 MN 6.3.3.3 GO:0000287 ... P13000 7669756
    2291 1dak:A (1.6) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9576910
    2292 1dam:A (1.8) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9865950
    2293 1dan:H (2.0) BS02 CA 3.4.21.21 GO:0004252 ... P08709 8598903
    2294 1dan:L (2.0) BS02 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    2295 1dan:L (2.0) BS03 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    2296 1dan:L (2.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    2297 1dan:L (2.0) BS05 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    2298 1dan:L (2.0) BS06 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    2299 1dan:L (2.0) BS07 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    2300 1dan:L (2.0) BS08 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    2301 1daq:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    2302 1daq:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    2303 1dav:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    2304 1dav:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    2305 1daw:A (2.2) BS01 MG 2.7.11.1 GO:0004672 ... P28523 10581548
    2306 1day:A (2.2) BS01 MG 2.7.11.1 GO:0004672 ... P28523 10581548
    2307 1db4:A (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    2308 1db4:A (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    2309 1db5:A (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    2310 1db5:A (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    2311 1dbi:A (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    2312 1dbi:A (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    2313 1dbi:A (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    2314 1dbn:A (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    2315 1dbn:A (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    2316 1dbn:B (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    2317 1dbn:B (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    2318 1dbr:A (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000166 ... Q26997 8836106
    2319 1dbr:B (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000166 ... Q26997 8836106
    2320 1dbr:D (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000166 ... Q26997 8836106
    2321 1dca:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8399159
    2322 1dcb:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8399159
    2323 1dce:B (2.0) BS01 ZN 2.5.1.60 GO:0003824 ... Q08603 10745007
    2324 1dce:D (2.0) BS01 ZN 2.5.1.60 GO:0003824 ... Q08603 10745007
    2325 1dck:A (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    2326 1dck:B (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    2327 1dcm:B (3.0) BS01 MG ? GO:0000160 ... P10958 10647182
    2328 1dcq:A (2.1) BS01 ZN ? GO:0005096 ... Q7SIG6 10601011
    2329 1dcy:A (2.7) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    2330 1dcy:A (2.7) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    2331 1dd6:A (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    2332 1dd6:A (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    2333 1dd6:B (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    2334 1dd6:B (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    2335 1ddk:A (3.1) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 10757977
    2336 1ddk:A (3.1) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 10757977
    2337 1ddz:A (2.2) BS01 ZN 4.2.1.1 GO:0004089 ... Q43060 10681531
    2338 1ddz:A (2.2) BS02 ZN 4.2.1.1 GO:0004089 ... Q43060 10681531
    2339 1ddz:B (2.2) BS01 ZN 4.2.1.1 GO:0004089 ... Q43060 10681531
    2340 1ddz:B (2.2) BS02 ZN 4.2.1.1 GO:0004089 ... Q43060 10681531
    2341 1de4:C (2.8) BS01 CA ? GO:0004998 ... P02786 10638746
    2342 1de4:F (2.8) BS01 CA ? GO:0004998 ... P02786 10638746
    2343 1de4:I (2.8) BS01 CA ? GO:0004998 ... P02786 10638746
    2344 1de5:A (2.2) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2345 1de5:B (2.2) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2346 1de5:C (2.2) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2347 1de5:D (2.2) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2348 1de6:A (2.1) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2349 1de6:A (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    2350 1de6:B (2.1) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2351 1de6:B (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    2352 1de6:C (2.1) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2353 1de6:C (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    2354 1de6:D (2.1) BS02 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    2355 1de6:D (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    2356 1de9:A (3.0) BS04 MN 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 10667800
    2357 1ded:A (2.0) BS05 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    2358 1ded:A (2.0) BS06 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    2359 1ded:B (2.0) BS03 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    2360 1ded:B (2.0) BS04 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    2361 1def:A (-1.00) BS01 ZN 3.5.1.88 GO:0042586 ... P0A6K3 8845003
    2362 1deh:A (2.2) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    2363 1deh:A (2.2) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    2364 1deh:B (2.2) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    2365 1deh:B (2.2) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    2366 1dej:S (2.4) BS01 CA ? GO:0051015 ... P06396 10669610
    2367 1dej:S (2.4) BS02 CA ? GO:0051015 ... P06396 10669610
    2368 1dek:A (2.0) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    2369 1dek:B (2.0) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    2370 1del:A (2.2) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    2371 1del:B (2.2) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    2372 1df1:A (2.35) BS01 ZN 1.14.13.39 GO:0004517 ... P29477 10562539
    2373 1dfe:A (-1.00) BS01 ZN ? GO:0003735 ... P80256 10656825
    2374 1dff:A (2.88) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9374869
    2375 1dfk:Z (4.2) BS01 CA ? GO:0005509 ... P07291 11016966
    2376 1dfl:X (4.2) BS01 CA ? GO:0005509 ... P07291 11016966
    2377 1dfl:Z (4.2) BS01 CA ? GO:0005509 ... P07291 11016966
    2378 1dfm:A (1.5) BS03 CA 3.1.21.4 GO:0000287 ... Q45488 10655616
    2379 1dfm:B (1.5) BS03 CA 3.1.21.4 GO:0000287 ... Q45488 10655616
    2380 1dfs:A (-1.00) BS01 CD ? GO:0046872 ... P02802 10631978
    2381 1dfs:A (-1.00) BS02 CD ? GO:0046872 ... P02802 10631978
    2382 1dfs:A (-1.00) BS03 CD ? GO:0046872 ... P02802 10631978
    2383 1dfs:A (-1.00) BS04 CD ? GO:0046872 ... P02802 10631978
    2384 1dft:A (-1.00) BS01 CD ? GO:0046872 ... P02802 10631978
    2385 1dft:A (-1.00) BS02 CD ? GO:0046872 ... P02802 10631978
    2386 1dfx:A (1.9) BS01 FE 1.15.1.2 GO:0005506 ... P22076 N/A
    2387 1dfx:A (1.9) BS02 FE 1.15.1.2 GO:0005506 ... P22076 N/A
    2388 1dfx:A (1.9) BS03 CA 1.15.1.2 GO:0005506 ... P22076 N/A
    2389 1dgl:A (2.4) BS03 CA ? GO:0005537 ... P08902 9830028
    2390 1dgl:A (2.4) BS04 MN ? GO:0005537 ... P08902 9830028
    2391 1dgl:B (2.4) BS04 CA ? GO:0005537 ... P08902 9830028
    2392 1dgl:B (2.4) BS05 MN ? GO:0005537 ... P08902 9830028
    2393 1dgm:A (1.8) BS01 MG 2.7.1.20 GO:0004001 ... Q9TVW2 10794412
    2394 1dgs:A (2.9) BS01 ZN 6.5.1.2 GO:0003677 ... Q9ZHI0 10698952
    2395 1dgs:B (2.9) BS01 ZN 6.5.1.2 GO:0003677 ... Q9ZHI0 10698952
    2396 1dgz:A (-1.00) BS01 ZN ? GO:0003735 ... P80256 10656825
    2397 1dhk:A (1.85) BS01 CA 3.2.1.1 GO:0003824 ... P00690 8994970
    2398 1dhk:B (1.85) BS01 CA ? GO:0015066 ... P02873 8994970
    2399 1dhk:B (1.85) BS02 CA ? GO:0015066 ... P02873 8994970
    2400 1dhy:A (2.3) BS01 FE 1.13.11.39 GO:0003824 ... P17297 8636975

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218