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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2j4h:A (2.7) BS01 YYY 3.5.4.13 GO:0000166 ... P28248 17651436
    2 2j4h:B (2.7) BS01 YYY 3.5.4.13 GO:0000166 ... P28248 17651436
    3 3evm:A (1.8) BS01 YYY 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    4 3evm:B (1.8) BS01 YYY 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    5 4qwb:A (1.8) BS03 YYY 2.7.7.7 GO:0000287 ... Q97W02 25104018
    6 4uog:A (2.3) BS01 YYY 2.7.4.6 GO:0004550 ... A5J299 25195883
    7 4uog:B (2.3) BS01 YYY 2.7.4.6 GO:0004550 ... A5J299 25195883
    8 4uog:C (2.3) BS01 YYY 2.7.4.6 GO:0004550 ... A5J299 25195883
    9 6nkb:A (2.0) BS01 YYY 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    10 6nkb:B (2.0) BS01 YYY 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    11 6nkb:C (2.0) BS01 YYY 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    12 6nkb:D (2.0) BS01 YYY 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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