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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2np9:A (2.45) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 17507985 MOAD: Ki=2.7uM
    PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    2 2np9:B (2.45) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 17507985 MOAD: Ki=2.7uM
    3 2np9:C (2.45) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 17507985 MOAD: Ki=2.7uM
    4 2pg8:A (3.0) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 18004875
    5 2pg8:B (3.0) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 18004875
    6 2pg8:C (3.0) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 18004875
    7 4ylh:A (2.58) BS02 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    8 4ylh:B (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    9 4ylh:C (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    10 4ylh:D (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    11 4ylh:E (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    12 4ylh:F (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    13 4ylh:G (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    14 4ylh:H (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    15 4ylh:I (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    16 4ylh:J (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    17 4ylh:K (2.58) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    18 4ylh:L (2.58) BS02 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    19 5kag:A (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    20 5kag:B (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    21 5kag:C (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    22 5kag:D (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    23 5kag:E (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    24 5kag:F (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    25 5kag:G (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    26 5kag:H (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    27 5kag:I (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    28 5kag:J (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    29 5kag:K (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    30 5kag:L (2.456) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    31 5kah:A (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    32 5kah:B (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    33 5kah:C (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    34 5kah:D (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    35 5kah:E (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    36 5kah:F (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    37 5kah:G (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    38 5kah:H (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    39 5kah:I (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    40 5kah:J (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    41 5kah:K (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    42 5kah:L (2.779) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 28695857
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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