Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 309 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5nh7:B (1.9) BS07 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    202 5nh7:C (1.9) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    203 5nh7:D (1.9) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    204 5nh7:D (1.9) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    205 5nhd:A (1.8) BS03 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    206 5nhd:B (1.8) BS01 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    207 5nhd:C (1.8) BS02 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    208 5nhd:C (1.8) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    209 5nhd:D (1.8) BS02 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    210 5nhd:D (1.8) BS04 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    211 5nhd:D (1.8) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    212 5nhe:A (1.86) BS03 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    213 5nhe:A (1.86) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    214 5nhe:B (1.86) BS01 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    215 5nhe:B (1.86) BS04 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    216 5nhe:C (1.86) BS01 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    217 5nhe:C (1.86) BS03 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    218 5nhe:C (1.86) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    219 5nhe:D (1.86) BS01 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    220 5nhe:D (1.86) BS02 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    221 5nlp:A (1.59) BS03 XYS 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    222 5uk5:A (2.506) BS02 XYS ? GO:0005509 ... Q07008 28254785
    223 5unc:A (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    224 5unc:A (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    225 5unc:B (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    226 5unc:B (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    227 5unc:C (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    228 5unc:C (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    229 5unc:D (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    230 5unc:D (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    231 5vyg:A (2.2) BS02 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    232 5vyg:B (2.2) BS02 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    233 5vyg:B (2.2) BS03 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    234 5vyg:C (2.2) BS02 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    235 5vyg:C (2.2) BS03 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    236 5yqs:A (2.4) BS02 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    237 5yqs:A (2.4) BS04 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    238 5yqs:B (2.4) BS02 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    239 5yqs:B (2.4) BS04 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    240 5yqs:B (2.4) BS06 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    241 5z5h:A (1.9) BS02 XYS 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    242 5z5i:A (1.7) BS03 XYS 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    243 5zn7:A (2.1) BS01 XYS N/A GO:0003824 ... N/A N/A
    244 5zn7:C (2.1) BS01 XYS N/A GO:0003824 ... N/A N/A
    245 5zn7:D (2.1) BS01 XYS N/A GO:0003824 ... N/A N/A
    246 5zn7:F (2.1) BS01 XYS N/A GO:0003824 ... N/A N/A
    247 5zn7:H (2.1) BS01 XYS N/A GO:0003824 ... N/A N/A
    248 6d6f:A (2.0) BS01 XYS 3.2.1.17 GO:0003796 ... P00698 30198901
    249 6dru:A (2.7) BS09 XYS 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    250 6dru:B (2.7) BS06 XYS 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    251 6mgk:A (2.1) BS02 XYS ? N/A A0A1R0YRH0 30463871
    252 6mgk:A (2.1) BS03 XYS ? N/A A0A1R0YRH0 30463871
    253 6mgk:B (2.1) BS02 XYS ? N/A A0A1R0YRH0 30463871
    254 6mgk:B (2.1) BS03 XYS ? N/A A0A1R0YRH0 30463871
    255 6mgk:B (2.1) BS04 XYS ? N/A A0A1R0YRH0 30463871
    256 6mgk:C (2.1) BS02 XYS ? N/A A0A1R0YRH0 30463871
    257 6mgk:C (2.1) BS03 XYS ? N/A A0A1R0YRH0 30463871
    258 6mgk:D (2.1) BS02 XYS ? N/A A0A1R0YRH0 30463871
    259 6mgk:D (2.1) BS03 XYS ? N/A A0A1R0YRH0 30463871
    260 6mgl:A (1.5) BS02 XYS ? N/A A0A1R0YRH0 30463871
    261 6mgl:A (1.5) BS03 XYS ? N/A A0A1R0YRH0 30463871
    262 6mgl:A (1.5) BS07 XYS ? N/A A0A1R0YRH0 30463871
    263 6p2l:A (1.08) BS02 XYS ? N/A G8TAF2 31324716
    264 6p2l:A (1.08) BS07 XYS ? N/A G8TAF2 31324716
    265 6p2m:A (1.98) BS03 XYS ? N/A G2PXX7 31324716
    266 6p2o:A (1.88) BS02 XYS ? GO:0000272 ... A0A0A0NH71 31324716
    267 6p2o:A (1.88) BS03 XYS ? GO:0000272 ... A0A0A0NH71 31324716
    268 6p2o:A (1.88) BS05 XYS ? GO:0000272 ... A0A0A0NH71 31324716
    269 6p2o:B (1.88) BS03 XYS ? GO:0000272 ... A0A0A0NH71 31324716
    270 6p2o:B (1.88) BS04 XYS ? GO:0000272 ... A0A0A0NH71 31324716
    271 6p2o:B (1.88) BS06 XYS ? GO:0000272 ... A0A0A0NH71 31324716
    272 6r2w:L (1.25) BS02 XYS 3.4.21.21 GO:0005509 ... P08709 31801825
    273 6r2w:L (1.25) BS03 XYS 3.4.21.21 GO:0005509 ... P08709 31801825
    274 6t8e:A (1.86) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    275 6t8e:A (1.86) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    276 6t8e:A (1.86) BS07 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    277 6t8e:B (1.86) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    278 6t8e:B (1.86) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    279 6t8e:B (1.86) BS07 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    280 6t8e:B (1.86) BS09 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    281 6t8e:C (1.86) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    282 6t8e:C (1.86) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    283 6t8e:C (1.86) BS07 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    284 6t8e:D (1.86) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    285 6t8e:D (1.86) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    286 6t8f:A (2.0) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    287 6t8f:A (2.0) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    288 6t8f:B (2.0) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    289 6t8f:B (2.0) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    290 6t8f:B (2.0) BS07 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    291 6t8f:B (2.0) BS08 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    292 6t8f:C (2.0) BS01 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    293 6t8f:C (2.0) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    294 6t8f:D (2.0) BS05 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    295 6t8f:D (2.0) BS06 XYS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    296 7eap:A (1.42) BS03 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 35717558
    297 7eap:A (1.42) BS05 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 35717558
    298 7kn8:A (1.95) BS03 XYS ? GO:0000272 ... Q8P9U5 N/A
    299 7kn8:B (1.95) BS03 XYS ? GO:0000272 ... Q8P9U5 N/A
    300 7knc:A (1.873) BS01 XYS N/A GO:0003824 ... N/A N/A
    301 7plb:B (1.73) BS03 XYS 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    302 7plc:A (2.15) BS02 XYS 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    303 7plc:C (2.15) BS02 XYS 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    304 7pvi:AAA (1.434) BS02 XYS 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    305 7pvi:BBB (1.434) BS02 XYS 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    306 7wh7:A (1.44) BS01 XYS 3.2.1.8 GO:0004553 ... Q4WLG5 N/A
    307 7wh7:B (1.44) BS01 XYS 3.2.1.8 GO:0004553 ... Q4WLG5 N/A
    308 7whe:B (1.75) BS01 XYS 3.2.1.8 GO:0004553 ... Q4WLG5 N/A
    309 8bqa:AAA (1.67) BS02 XYS 3.2.1.4 GO:0000272 ... B3PCS3 38161374
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417