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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1njr:A (1.9) BS01 XYL 3.1.3.84 GO:0005575 ... Q04299 15722447
    2 1s5n:A (0.95) BS01 XYL 5.3.1.5 GO:0000287 ... P15587 15157080
    3 1w3y:A (1.65) BS02 XYL 4.2.2.1 GO:0003824 ... Q54873 15322107
    4 1w3y:A (1.65) BS03 XYL 4.2.2.1 GO:0003824 ... Q54873 15322107
    5 1xig:A (1.7) BS01 XYL 5.3.1.5 GO:0000287 ... P24300 15299449
    6 1xim:A (2.2) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    7 1xim:B (2.2) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    8 1xim:C (2.2) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    9 1xim:D (2.2) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    10 1xin:A (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1610791
    11 1xin:B (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1610791
    12 1xin:C (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1610791
    13 1xin:D (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1610791
    14 1xlc:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    15 1xlc:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    16 1xld:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    17 1xld:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    18 1xlg:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    19 1xlg:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    20 1xlj:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    21 1xlj:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    22 1xlm:A (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 10456773
    23 1xlm:B (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 10456773
    24 2b4c:H (3.3) BS01 XYL N/A N/A N/A 16284180
    25 2vfs:A (1.6) BS02 XYL 1.1.3.41 GO:0003885 ... Q9ZBU1 18154360
    26 2xim:A (2.3) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    27 2xim:B (2.3) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    28 2xim:C (2.3) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    29 2xim:D (2.3) BS01 XYL 5.3.1.5 GO:0000287 ... P12851 1540579
    30 2xis:A (1.71) BS01 XYL 5.3.1.5 GO:0000287 ... P24300 2006134
    31 3gnx:A (2.0) BS01 XYL 5.3.1.5 GO:0000287 ... P24300 N/A
    32 3gnx:E (2.0) BS01 XYL 5.3.1.5 GO:0000287 ... P24300 N/A
    33 3m1c:A (3.0) BS01 XYL ? GO:0016020 ... P89445 20601960
    34 3mj4:I (2.65) BS02 XYL 5.4.99.9 GO:0000166 ... Q9RYF1 20850454
    35 4duo:A (2.0) BS03 XYL 5.3.1.5 GO:0000287 ... P24300 22948921
    36 4gna:A (1.85) BS02 XYL 3.1.1.17 GO:0001822 ... Q64374 23349732
    37 4gna:B (1.85) BS01 XYL 3.1.1.17 GO:0001822 ... Q64374 23349732
    38 4rs3:A (1.4) BS01 XYL 3.6.3.17 GO:0005886 ... A0QYB3 26560079
    39 4xwh:A (2.32) BS01 XYL 3.2.1.50 GO:0001573 ... P54802 30802506
    40 4xwh:A (2.32) BS02 XYL 3.2.1.50 GO:0001573 ... P54802 30802506
    41 5nh6:A (1.75) BS02 XYL 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    42 5nh6:B (1.75) BS02 XYL 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    43 5nh6:C (1.75) BS02 XYL 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    44 5nh6:D (1.75) BS02 XYL 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    45 5xia:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2769749
    46 5xia:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2769749
    47 5y4j:A (1.4) BS02 XYL 5.3.1.5 GO:0000287 ... P24300 28865958
    48 6rv8:B (1.85) BS01 XYL 3.1.1.117 GO:0005576 ... A0A0A7EQR3 32094331
    49 6rv9:B (1.64) BS01 XYL 3.1.1.117 N/A A0A0A7EQR3 32094331
    50 7dfk:A (1.4) BS02 XYL 5.3.1.5 GO:0000287 ... P24300 N/A
    51 7ey2:C (2.43) BS02 XYL 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    52 7ey2:D (2.43) BS02 XYL 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    53 7ey2:E (2.43) BS03 XYL 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    54 7f95:A () BS02 XYL N/A N/A N/A N/A
    55 7ly3:A (3.0) BS01 XYL ? N/A P0DTC2 33761326
    56 7ly3:B (3.0) BS01 XYL ? N/A P0DTC2 33761326
    57 7wj9:A (1.75) BS01 XYL 3.2.1.- GO:0004553 ... A2RM80 35293315
    58 7wj9:B (1.75) BS01 XYL 3.2.1.- GO:0004553 ... A2RM80 35293315
    59 7wj9:C (1.75) BS01 XYL 3.2.1.- GO:0004553 ... A2RM80 35293315
    60 7wj9:D (1.75) BS01 XYL 3.2.1.- GO:0004553 ... A2RM80 35293315
    61 7wj9:E (1.75) BS01 XYL 3.2.1.- GO:0004553 ... A2RM80 35293315
    62 7wj9:F (1.75) BS01 XYL 3.2.1.- GO:0004553 ... A2RM80 35293315
    63 7yo6:B (2.54) BS02 XYL 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    64 8wdg:A (0.99) BS03 XYL 5.3.1.5 GO:0000287 ... P24300 37793321
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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