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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lol:A (1.9) BS02 XMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.41uM
    PDBbind: -logKd/Ki=6.39, Ki=0.41uM
    2 1lol:B (1.9) BS02 XMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.41uM
    PDBbind: -logKd/Ki=6.39, Ki=0.41uM
    3 1m9n:A (1.93) BS02 XMP 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12501179 MOAD: Ki=0.12uM
    PDBbind: -logKd/Ki=6.92, Ki=0.12uM
    4 1m9n:B (1.93) BS03 XMP 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12501179 MOAD: Ki=0.12uM
    PDBbind: -logKd/Ki=6.92, Ki=0.12uM
    5 1mei:A (2.2) BS02 XMP 1.1.1.205 GO:0000166 ... P50097 12559919
    6 1mew:A (2.15) BS02 XMP 1.1.1.205 GO:0000166 ... P50097 12559919
    7 1p4r:A (2.55) BS03 XMP 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    8 1pkx:A (1.9) BS01 XMP 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14756553 MOAD: Ki=0.12uM
    PDBbind: -logKd/Ki=6.92, Ki=0.12uM
    9 1pkx:C (1.9) BS01 XMP 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14756553 MOAD: Ki=0.12uM
    10 1pl0:A (2.6) BS01 XMP 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    11 1pl0:C (2.6) BS01 XMP 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    12 1qk5:A (1.6) BS01 XMP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... Q26997 10545171
    13 1qk5:B (1.6) BS01 XMP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... Q26997 10545171
    14 2cu0:A (2.1) BS01 XMP 1.1.1.205 GO:0000166 ... O58045 N/A
    15 2cu0:B (2.1) BS01 XMP 1.1.1.205 GO:0000166 ... O58045 N/A
    16 2czf:A (1.85) BS01 XMP 4.1.1.23 GO:0004590 ... O58462 N/A
    17 2czf:B (1.85) BS01 XMP 4.1.1.23 GO:0004590 ... O58462 N/A
    18 2vxo:A (2.5) BS01 XMP 6.3.5.2 GO:0003921 ... P49915 23816837
    19 2vxo:B (2.5) BS01 XMP 6.3.5.2 GO:0003921 ... P49915 23816837
    20 2ywc:A (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    21 2ywc:B (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    22 2ywc:C (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    23 2ywc:D (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    24 3bpw:A (1.7) BS01 XMP 4.1.1.23 GO:0004590 ... Q8IJH3 N/A
    25 3bpw:A (1.7) BS02 XMP 4.1.1.23 GO:0004590 ... Q8IJH3 N/A
    26 3bpw:B (1.7) BS01 XMP 4.1.1.23 GO:0004590 ... Q8IJH3 N/A
    27 3bpw:B (1.7) BS02 XMP 4.1.1.23 GO:0004590 ... Q8IJH3 N/A
    28 3bvj:A (1.8) BS01 XMP 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    29 3bvj:A (1.8) BS02 XMP 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    30 3bvj:B (1.8) BS01 XMP 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    31 3bvj:B (1.8) BS02 XMP 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    32 3tsd:A (2.653) BS01 XMP 1.1.1.205 GO:0000166 ... A0A6L8P2U9 22788966 PDBbind: -logKd/Ki=3.66, Ki=218uM
    33 3tsd:B (2.653) BS01 XMP 1.1.1.205 GO:0000166 ... A0A6L8P2U9 22788966
    34 3uow:A (2.72) BS01 XMP 6.3.5.2 GO:0000287 ... Q8IJR9 N/A
    35 3uow:B (2.72) BS01 XMP 6.3.5.2 GO:0000287 ... Q8IJR9 N/A
    36 4qq3:A (1.72) BS01 XMP 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    37 4x3z:A (1.62) BS01 XMP 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    38 4x3z:B (1.62) BS01 XMP 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    39 4zqm:A (1.602) BS01 XMP 1.1.1.205 GO:0003824 ... P9WKI7 26440283
    40 5upx:A (1.855) BS01 XMP 1.1.1.205 GO:0003824 ... Q926Y9 N/A
    41 6jp9:A (2.1) BS01 XMP 6.3.5.2 GO:0003921 ... Q58531 36040251
    42 6jp9:B (2.1) BS01 XMP 6.3.5.2 GO:0003921 ... Q58531 36040251
    43 6jp9:C (2.1) BS01 XMP 6.3.5.2 GO:0003921 ... Q58531 36040251
    44 6jp9:D (2.1) BS01 XMP 6.3.5.2 GO:0003921 ... Q58531 36040251
    45 6mxb:A (2.192) BS01 XMP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=26uM
    PDBbind: -logKd/Ki=4.59, Ki=26uM
    46 6mxb:B (2.192) BS01 XMP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=26uM
    47 6mxb:C (2.192) BS01 XMP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=26uM
    48 6mxb:D (2.192) BS01 XMP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=26uM
    49 6mxb:E (2.192) BS01 XMP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=26uM
    50 6mxb:F (2.192) BS01 XMP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=26uM
    51 6mxg:A (2.392) BS01 XMP 2.4.2.8 GO:0000166 ... Q07010 31287615
    52 6mxg:B (2.392) BS01 XMP 2.4.2.8 GO:0000166 ... Q07010 31287615
    53 7ef7:A (1.5) BS02 XMP ? GO:0005634 ... Q9SKY5 34824243
    54 8p37:A (1.219) BS01 XMP ? GO:0000166 ... P73853 37875114
    55 8p4q:A (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    56 8p4q:B (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    57 8p4q:C (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    58 8p4q:D (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    59 8p4q:E (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    60 8p4q:F (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    61 8p4q:G (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    62 8p4q:H (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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