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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1zgs:A (2.5) BS01 XMM ? GO:0005536 ... P83304 16185708
    2 1zgs:A (2.5) BS02 XMM ? GO:0005536 ... P83304 16185708
    3 1zgs:A (2.5) BS03 XMM ? GO:0005536 ... P83304 16185708
    4 1zgs:B (2.5) BS01 XMM ? GO:0005536 ... P83304 16185708
    5 1zgs:B (2.5) BS02 XMM ? GO:0005536 ... P83304 16185708
    6 1zgs:B (2.5) BS03 XMM ? GO:0005536 ... P83304 16185708
    7 2jdz:A (2.1) BS04 XMM ? GO:0005537 ... P81637 17937659
    8 2je7:A (1.65) BS03 XMM ? GO:0005537 ... P81637 17937659
    9 2je9:A (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    10 2je9:B (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    11 2je9:C (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    12 2je9:D (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    13 2jec:A (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    14 2jec:B (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    15 2jec:C (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    16 2jec:D (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    17 3ax4:A (2.613) BS03 XMM ? GO:0005537 ... I1SB09 23353644
    18 3rs6:A (1.8) BS03 XMM ? GO:0005537 ... P58907 22198239
    19 3sh3:A (2.3) BS03 XMM ? GO:0005509 ... P86624 21924319
    20 3u4x:A (2.16) BS03 XMM ? GO:0005509 ... J9PBR3 22554687
    21 4k21:A (1.6) BS03 XMM ? GO:0005537 ... A0A023GPI8 24865454
    22 4l8q:A (2.3) BS03 XMM ? GO:0005537 ... A0A067XG71 24361256
    23 4mye:A (1.65) BS03 XMM ? GO:0005537 ... P86184 N/A
    24 4not:A (2.35) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    25 5t7p:A (2.16) BS03 XMM ? GO:0005537 ... P02867 28754321
    26 5t7p:B (2.16) BS03 XMM ? GO:0005537 ... P02867 28754321
    27 5tg3:A (1.765) BS03 XMM ? GO:0005509 ... C0HK81 28130130
    28 5tg3:B (1.765) BS03 XMM ? GO:0005509 ... C0HK81 28130130
    29 5tg3:C (1.765) BS03 XMM ? GO:0005509 ... C0HK81 28130130
    30 5tg3:D (1.765) BS03 XMM ? GO:0005509 ... C0HK81 28130130
    31 5uuy:A (1.88) BS03 XMM ? GO:0005537 ... P58907 28939357
    32 6cj9:A (1.7) BS03 XMM ? GO:0030246 ... C0HK27 29559315
    33 8ux7:A (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    34 8ux7:B (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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