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BioLiP
Download all results in tab-seperated text for 240 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4nxa:A (1.6) BS05 XE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25211169
    202 4nxa:A (1.6) BS06 XE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25211169
    203 4o4t:A (1.9) BS02 XE 1.7.-.- GO:0005092 ... Q9ER97 25211169
    204 4o4t:A (1.9) BS03 XE 1.7.-.- GO:0005092 ... Q9ER97 25211169
    205 4o4t:A (1.9) BS04 XE 1.7.-.- GO:0005092 ... Q9ER97 25211169
    206 4ylh:A (2.58) BS01 XE 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    207 4ylh:L (2.58) BS01 XE 1.13.11.80 GO:0006635 ... Q8KLK7 26508997
    208 5o1k:A (2.05) BS02 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    209 5o1k:A (2.05) BS03 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    210 5o1k:A (2.05) BS04 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    211 5o27:A (2.31) BS02 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    212 5o27:A (2.31) BS03 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    213 5o27:A (2.31) BS04 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    214 5o27:A (2.31) BS05 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    215 5o27:A (2.31) BS06 XE 1.7.-.- GO:0005092 ... Q9ER97 29108649
    216 7b2h:A (2.12) BS04 XE 2.8.4.1 GO:0005737 ... P11558 34210888
    217 7b2h:B (2.12) BS04 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    218 7b2h:B (2.12) BS05 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    219 7b2h:B (2.12) BS06 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    220 7b2h:B (2.12) BS07 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    221 7b2h:D (2.12) BS07 XE 2.8.4.1 GO:0005737 ... P11558 34210888
    222 7b2h:E (2.12) BS04 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    223 7b2h:E (2.12) BS05 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    224 7b2h:E (2.12) BS06 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    225 7b2h:E (2.12) BS07 XE 2.8.4.1 GO:0005737 ... P11560 34210888
    226 7shw:A (1.79) BS01 XE ? N/A A0QP93 35362472
    227 7shw:A (1.79) BS02 XE ? N/A A0QP93 35362472
    228 7shw:A (1.79) BS03 XE ? N/A A0QP93 35362472
    229 7shw:B (1.79) BS01 XE ? N/A A0QP93 35362472
    230 7shw:B (1.79) BS02 XE ? N/A A0QP93 35362472
    231 7szg:A (2.69) BS03 XE ? GO:0005506 ... C3RVP5 35017498
    232 7szg:B (2.69) BS03 XE ? GO:0005506 ... C3RVP5 35017498
    233 7tsj:A (2.1) BS04 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    234 7tsj:A (2.1) BS05 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    235 7tsj:A (2.1) BS06 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    236 7tsj:A (2.1) BS07 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    237 7tsj:A (2.1) BS08 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    238 7tsj:A (2.1) BS09 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    239 7tsj:A (2.1) BS10 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    240 7tsj:A (2.1) BS11 XE 1.2.7.4 GO:0003824 ... Q72A99 35278753
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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