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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a96:B (2.0) BS02 XAN 2.4.2.-
    2.4.2.22    		 GO:0000287 ... P0A9M5 9743633
    2 1a96:C (2.0) BS02 XAN 2.4.2.-
    2.4.2.22    		 GO:0000287 ... P0A9M5 9743633
    3 1yr3:A (3.2) BS01 XAN 2.4.2.1 GO:0003824 ... P45563 15808857
    4 1yr3:B (3.2) BS01 XAN 2.4.2.1 GO:0003824 ... P45563 15808857
    5 1yr3:C (3.2) BS01 XAN 2.4.2.1 GO:0003824 ... P45563 15808857
    6 1yr3:D (3.2) BS01 XAN 2.4.2.1 GO:0003824 ... P45563 15808857
    7 1yr3:E (3.2) BS01 XAN 2.4.2.1 GO:0003824 ... P45563 15808857
    8 1yr3:F (3.2) BS01 XAN 2.4.2.1 GO:0003824 ... P45563 15808857
    9 2uz9:A (2.3) BS02 XAN 3.5.4.3 GO:0000255 ... Q9Y2T3 N/A PDBbind: -logKd/Ki=5.71, Ki=1.96uM
    10 2w3s:B (2.6) BS02 XAN 1.1.1.204 GO:0005506 ... O54051 19109249
    11 2w3s:D (2.6) BS02 XAN 1.1.1.204 GO:0005506 ... O54051 19109249
    12 2w3s:F (2.6) BS02 XAN 1.1.1.204 GO:0005506 ... O54051 19109249
    13 2w3s:H (2.6) BS02 XAN 1.1.1.204 GO:0005506 ... O54051 19109249
    14 3eub:4 (2.6) BS02 XAN 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 19109252
    15 3eub:C (2.6) BS02 XAN 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 19109252
    16 3eub:L (2.6) BS02 XAN 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 19109252
    17 3eub:U (2.6) BS02 XAN 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 19109252
    18 3l8w:A (1.0) BS01 XAN 1.7.3.3 GO:0004846 ... Q00511 20516624
    19 3odg:A (1.64) BS01 XAN 2.4.2.1 GO:0003824 ... Q66D48 N/A
    20 5grk:A (2.804) BS01 XAN ? N/A Q89XR0 28369586
    21 5grk:B (2.804) BS01 XAN ? N/A Q89XR0 28369586
    22 5grk:C (2.804) BS01 XAN ? N/A Q89XR0 28369586
    23 5grk:D (2.804) BS01 XAN ? N/A Q89XR0 28369586
    24 5h9i:A (1.501) BS01 XAN ? GO:0000703 ... Q39ZI0 27071000
    25 5i6c:A (3.7) BS01 XAN ? GO:0000324 ... Q07307 27088252
    26 5i6c:B (3.7) BS01 XAN ? GO:0000324 ... Q07307 27088252
    27 5ruy:A (1.0) BS01 XAN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    28 6oha:A (2.21) BS01 XAN 3.5.4.3 GO:0005737 ... Q07729 31283204
    29 7u9r:A (3.69) BS03 XAN ? GO:0001666 ... Q92736 35857850
    30 7u9r:B (3.69) BS03 XAN ? GO:0001666 ... Q92736 35857850
    31 7u9r:C (3.69) BS03 XAN ? GO:0001666 ... Q92736 35857850
    32 7u9r:D (3.69) BS03 XAN ? GO:0001666 ... Q92736 35857850
    33 7u9z:A (3.29) BS04 XAN ? GO:0001666 ... Q92736 35857850
    34 7u9z:B (3.29) BS04 XAN ? GO:0001666 ... Q92736 35857850
    35 7u9z:C (3.29) BS04 XAN ? GO:0001666 ... Q92736 35857850
    36 7u9z:D (3.29) BS04 XAN ? GO:0001666 ... Q92736 35857850
    37 7ua4:A (2.93) BS04 XAN ? GO:0001666 ... Q92736 35857850
    38 7ua4:B (2.93) BS04 XAN ? GO:0001666 ... Q92736 35857850
    39 7ua4:C (2.93) BS04 XAN ? GO:0001666 ... Q92736 35857850
    40 7ua4:D (2.93) BS04 XAN ? GO:0001666 ... Q92736 35857850
    41 7ua9:A (3.59) BS04 XAN ? GO:0001666 ... Q92736 35857850
    42 7ua9:B (3.59) BS04 XAN ? GO:0001666 ... Q92736 35857850
    43 7ua9:C (3.59) BS04 XAN ? GO:0001666 ... Q92736 35857850
    44 7ua9:D (3.59) BS04 XAN ? GO:0001666 ... Q92736 35857850
    45 8fwy:A (1.54) BS01 XAN 2.4.2.8 GO:0000166 ... Q4DGA2 37418678
    46 8fwy:B (1.54) BS01 XAN 2.4.2.8 GO:0000166 ... Q4DGA2 37418678
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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