Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7kno:A (1.8) BS01 WTA 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    2 7kno:B (1.8) BS01 WTA 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    3 7kno:C (1.8) BS01 WTA 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    4 7kqz:A (2.15) BS01 WTA 6.2.1.1 GO:0003987 ... J3KJC6 N/A
    5 7kvy:A (1.9) BS02 WTA 6.2.1.1 GO:0003987 ... J3KJC6 N/A
    6 7l3p:A (2.1) BS01 WTA 6.2.1.1 GO:0003987 ... J3KJC6 N/A
    7 7mmz:A (2.4) BS01 WTA 6.2.1.1 GO:0003987 ... Q5ZZ84 37223974
    8 8u2r:A (1.55) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    9 8u2s:A (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    10 8u2s:B (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    11 9c8s:A (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    12 9c8s:B (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    13 9c8s:C (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417